Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1389:A1379
Extra
PDB:
ATOM 1 O3' A A1388 -5.679 -46.931 22.403 1.00 0.01 O
ATOM 2 P U A1389 -6.266 -45.943 21.287 1.00 12.13 P
ATOM 3 OP1 U A1389 -7.639 -45.605 21.697 1.00 12.13 O
ATOM 4 OP2 U A1389 -6.045 -46.582 19.965 1.00 12.13 O
ATOM 5 O5' U A1389 -5.350 -44.667 21.433 1.00 12.13 O
ATOM 6 C5' U A1389 -3.951 -44.753 21.240 1.00 12.13 C
ATOM 7 C4' U A1389 -3.212 -43.783 22.125 1.00 12.13 C
ATOM 8 O4' U A1389 -3.584 -42.423 21.766 1.00 12.13 O
ATOM 9 C3' U A1389 -3.504 -43.914 23.620 1.00 12.13 C
ATOM 10 O3' U A1389 -2.301 -43.777 24.364 1.00 12.13 O
ATOM 11 C2' U A1389 -4.413 -42.726 23.901 1.00 12.13 C
ATOM 12 O2' U A1389 -4.355 -42.246 25.211 1.00 12.13 O
ATOM 13 C1' U A1389 -3.862 -41.716 22.946 1.00 12.13 C
ATOM 14 N1 U A1389 -4.766 -40.612 22.665 1.00 11.54 N
ATOM 15 C2 U A1389 -4.177 -39.417 22.953 1.00 11.54 C
ATOM 16 O2 U A1389 -3.053 -39.298 23.346 1.00 11.54 O
ATOM 17 N3 U A1389 -4.891 -38.319 22.755 1.00 11.54 N
ATOM 18 C4 U A1389 -6.149 -38.308 22.326 1.00 11.54 C
ATOM 19 O4 U A1389 -6.572 -37.177 22.237 1.00 11.54 O
ATOM 20 C5 U A1389 -6.771 -39.575 22.057 1.00 11.54 C
ATOM 21 C6 U A1389 -6.061 -40.687 22.253 1.00 11.54 C
ATOM 22 P U A1390 -1.454 -45.073 24.725 1.00 0.01 P
ATOM 23 OP1 U A1390 -0.148 -44.626 25.181 1.00 0.01 O
ATOM 24 OP2 U A1390 -1.527 -45.951 23.566 1.00 0.01 O
ATOM 25 O5' U A1390 -2.248 -45.700 25.951 1.00 0.01 O
TER
ATOM 1 O3' A B1378 -2.624 -35.824 23.950 1.00 1.22 O
ATOM 2 P C B1379 -3.618 -34.937 23.051 1.00 2.63 P
ATOM 3 OP1 C B1379 -3.481 -33.529 23.500 1.00 2.63 O
ATOM 4 OP2 C B1379 -4.949 -35.573 23.097 1.00 2.63 O
ATOM 5 O5' C B1379 -3.002 -35.111 21.613 1.00 2.63 O
ATOM 6 C5' C B1379 -2.435 -36.351 21.236 1.00 2.63 C
ATOM 7 C4' C B1379 -1.078 -36.170 20.614 1.00 2.63 C
ATOM 8 O4' C B1379 -0.058 -36.182 21.632 1.00 2.63 O
ATOM 9 C3' C B1379 -0.646 -37.255 19.660 1.00 2.63 C
ATOM 10 O3' C B1379 -1.225 -37.093 18.391 1.00 2.63 O
ATOM 11 C2' C B1379 0.863 -37.099 19.667 1.00 2.63 C
ATOM 12 O2' C B1379 1.243 -35.959 18.922 1.00 2.63 O
ATOM 13 C1' C B1379 1.110 -36.790 21.127 1.00 2.63 C
ATOM 14 N1 C B1379 1.391 -37.985 21.936 1.00 2.49 N
ATOM 15 C2 C B1379 2.697 -38.429 22.072 1.00 2.49 C
ATOM 16 O2 C B1379 3.535 -37.830 21.412 1.00 2.49 O
ATOM 17 N3 C B1379 2.995 -39.485 22.869 1.00 2.49 N
ATOM 18 C4 C B1379 2.021 -40.081 23.561 1.00 2.49 C
ATOM 19 N4 C B1379 2.281 -41.121 24.364 1.00 2.49 N
ATOM 20 C5 C B1379 0.679 -39.620 23.453 1.00 2.49 C
ATOM 21 C6 C B1379 0.406 -38.575 22.654 1.00 2.49 C
ATOM 22 P A B1380 -1.330 -38.322 17.383 1.00 0.02 P
ATOM 23 OP1 A B1380 -2.051 -37.822 16.212 1.00 0.02 O
ATOM 24 OP2 A B1380 -1.888 -39.471 18.131 1.00 0.02 O
ATOM 25 O5' A B1380 0.186 -38.626 17.012 1.00 0.02 O
TER
ATOM 2 P U A1389 -6.266 -45.943 21.287 1.00 12.13 P
ATOM 3 OP1 U A1389 -7.639 -45.605 21.697 1.00 12.13 O
ATOM 4 OP2 U A1389 -6.045 -46.582 19.965 1.00 12.13 O
ATOM 5 O5' U A1389 -5.350 -44.667 21.433 1.00 12.13 O
ATOM 6 C5' U A1389 -3.951 -44.753 21.240 1.00 12.13 C
ATOM 7 C4' U A1389 -3.212 -43.783 22.125 1.00 12.13 C
ATOM 8 O4' U A1389 -3.584 -42.423 21.766 1.00 12.13 O
ATOM 9 C3' U A1389 -3.504 -43.914 23.620 1.00 12.13 C
ATOM 10 O3' U A1389 -2.301 -43.777 24.364 1.00 12.13 O
ATOM 11 C2' U A1389 -4.413 -42.726 23.901 1.00 12.13 C
ATOM 12 O2' U A1389 -4.355 -42.246 25.211 1.00 12.13 O
ATOM 13 C1' U A1389 -3.862 -41.716 22.946 1.00 12.13 C
ATOM 14 N1 U A1389 -4.766 -40.612 22.665 1.00 11.54 N
ATOM 15 C2 U A1389 -4.177 -39.417 22.953 1.00 11.54 C
ATOM 16 O2 U A1389 -3.053 -39.298 23.346 1.00 11.54 O
ATOM 17 N3 U A1389 -4.891 -38.319 22.755 1.00 11.54 N
ATOM 18 C4 U A1389 -6.149 -38.308 22.326 1.00 11.54 C
ATOM 19 O4 U A1389 -6.572 -37.177 22.237 1.00 11.54 O
ATOM 20 C5 U A1389 -6.771 -39.575 22.057 1.00 11.54 C
ATOM 21 C6 U A1389 -6.061 -40.687 22.253 1.00 11.54 C
ATOM 22 P U A1390 -1.454 -45.073 24.725 1.00 0.01 P
ATOM 23 OP1 U A1390 -0.148 -44.626 25.181 1.00 0.01 O
ATOM 24 OP2 U A1390 -1.527 -45.951 23.566 1.00 0.01 O
ATOM 25 O5' U A1390 -2.248 -45.700 25.951 1.00 0.01 O
TER
ATOM 1 O3' A B1378 -2.624 -35.824 23.950 1.00 1.22 O
ATOM 2 P C B1379 -3.618 -34.937 23.051 1.00 2.63 P
ATOM 3 OP1 C B1379 -3.481 -33.529 23.500 1.00 2.63 O
ATOM 4 OP2 C B1379 -4.949 -35.573 23.097 1.00 2.63 O
ATOM 5 O5' C B1379 -3.002 -35.111 21.613 1.00 2.63 O
ATOM 6 C5' C B1379 -2.435 -36.351 21.236 1.00 2.63 C
ATOM 7 C4' C B1379 -1.078 -36.170 20.614 1.00 2.63 C
ATOM 8 O4' C B1379 -0.058 -36.182 21.632 1.00 2.63 O
ATOM 9 C3' C B1379 -0.646 -37.255 19.660 1.00 2.63 C
ATOM 10 O3' C B1379 -1.225 -37.093 18.391 1.00 2.63 O
ATOM 11 C2' C B1379 0.863 -37.099 19.667 1.00 2.63 C
ATOM 12 O2' C B1379 1.243 -35.959 18.922 1.00 2.63 O
ATOM 13 C1' C B1379 1.110 -36.790 21.127 1.00 2.63 C
ATOM 14 N1 C B1379 1.391 -37.985 21.936 1.00 2.49 N
ATOM 15 C2 C B1379 2.697 -38.429 22.072 1.00 2.49 C
ATOM 16 O2 C B1379 3.535 -37.830 21.412 1.00 2.49 O
ATOM 17 N3 C B1379 2.995 -39.485 22.869 1.00 2.49 N
ATOM 18 C4 C B1379 2.021 -40.081 23.561 1.00 2.49 C
ATOM 19 N4 C B1379 2.281 -41.121 24.364 1.00 2.49 N
ATOM 20 C5 C B1379 0.679 -39.620 23.453 1.00 2.49 C
ATOM 21 C6 C B1379 0.406 -38.575 22.654 1.00 2.49 C
ATOM 22 P A B1380 -1.330 -38.322 17.383 1.00 0.02 P
ATOM 23 OP1 A B1380 -2.051 -37.822 16.212 1.00 0.02 O
ATOM 24 OP2 A B1380 -1.888 -39.471 18.131 1.00 0.02 O
ATOM 25 O5' A B1380 0.186 -38.626 17.012 1.00 0.02 O
TER
Atoms:
C4: (-6.149,-38.308,22.326)
N3: (-4.891,-38.319,22.755)
OP1: (-7.639,-45.605,21.697)
OP2: (-6.045,-46.582,19.965)
C2: (-4.177,-39.417,22.953)
C1': (-3.862,-41.716,22.946)
C3': (-3.504,-43.914,23.620)
O5': (-5.350,-44.667,21.433)
O4': (-3.584,-42.423,21.766)
C5': (-3.951,-44.753,21.240)
P: (-6.266,-45.943,21.287)
C4': (-3.212,-43.783,22.125)
C2': (-4.413,-42.726,23.901)
O2': (-4.355,-42.246,25.211)
N1: (-4.766,-40.612,22.665)
O4: (-6.572,-37.177,22.237)
O2: (-3.053,-39.298,23.346)
C6: (-6.061,-40.687,22.253)
C5: (-6.771,-39.575,22.057)
O3': (-2.301,-43.777,24.364)
N3: (-4.891,-38.319,22.755)
OP1: (-7.639,-45.605,21.697)
OP2: (-6.045,-46.582,19.965)
C2: (-4.177,-39.417,22.953)
C1': (-3.862,-41.716,22.946)
C3': (-3.504,-43.914,23.620)
O5': (-5.350,-44.667,21.433)
O4': (-3.584,-42.423,21.766)
C5': (-3.951,-44.753,21.240)
P: (-6.266,-45.943,21.287)
C4': (-3.212,-43.783,22.125)
C2': (-4.413,-42.726,23.901)
O2': (-4.355,-42.246,25.211)
N1: (-4.766,-40.612,22.665)
O4: (-6.572,-37.177,22.237)
O2: (-3.053,-39.298,23.346)
C6: (-6.061,-40.687,22.253)
C5: (-6.771,-39.575,22.057)
O3': (-2.301,-43.777,24.364)
C2: (2.697,-38.429,22.072)
OP1: (-3.481,-33.529,23.500)
OP2: (-4.949,-35.573,23.097)
C4: (2.021,-40.081,23.561)
O5': (-3.002,-35.111,21.613)
C3': (-0.646,-37.255,19.660)
C1': (1.110,-36.790,21.127)
O4': (-0.058,-36.182,21.632)
C5': (-2.435,-36.351,21.236)
P: (-3.618,-34.937,23.051)
O2: (3.535,-37.830,21.412)
C4': (-1.078,-36.170,20.614)
C2': (0.863,-37.099,19.667)
O2': (1.243,-35.959,18.922)
N1: (1.391,-37.985,21.936)
N3: (2.995,-39.485,22.869)
N4: (2.281,-41.121,24.364)
C6: (0.406,-38.575,22.654)
C5: (0.679,-39.620,23.453)
O3': (-1.225,-37.093,18.391)
OP1: (-3.481,-33.529,23.500)
OP2: (-4.949,-35.573,23.097)
C4: (2.021,-40.081,23.561)
O5': (-3.002,-35.111,21.613)
C3': (-0.646,-37.255,19.660)
C1': (1.110,-36.790,21.127)
O4': (-0.058,-36.182,21.632)
C5': (-2.435,-36.351,21.236)
P: (-3.618,-34.937,23.051)
O2: (3.535,-37.830,21.412)
C4': (-1.078,-36.170,20.614)
C2': (0.863,-37.099,19.667)
O2': (1.243,-35.959,18.922)
N1: (1.391,-37.985,21.936)
N3: (2.995,-39.485,22.869)
N4: (2.281,-41.121,24.364)
C6: (0.406,-38.575,22.654)
C5: (0.679,-39.620,23.453)
O3': (-1.225,-37.093,18.391)
Image (generated by PyMOL):