Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2PXD:B12:B13
Extra
PDB:
ATOM 1 O3' C A 11 103.306 -24.118 40.187 1.00 35.06 O
ATOM 2 P C A 12 104.240 -25.055 41.086 1.00 45.72 P
ATOM 3 OP1 C A 12 103.593 -26.376 41.306 1.00 36.66 O
ATOM 4 OP2 C A 12 104.616 -24.216 42.253 1.00 38.69 O
ATOM 5 O5' C A 12 105.523 -25.296 40.176 1.00 48.91 O
ATOM 6 C5' C A 12 105.488 -26.243 39.116 1.00 57.33 C
ATOM 7 C4' C A 12 106.852 -26.371 38.495 1.00 63.31 C
ATOM 8 O4' C A 12 107.211 -25.101 37.892 1.00 63.73 O
ATOM 9 C3' C A 12 107.960 -26.650 39.491 1.00 68.08 C
ATOM 10 O3' C A 12 108.090 -28.048 39.733 1.00 75.29 O
ATOM 11 C2' C A 12 109.175 -26.067 38.788 1.00 67.43 C
ATOM 12 O2' C A 12 109.651 -26.926 37.774 1.00 69.82 O
ATOM 13 C1' C A 12 108.574 -24.816 38.146 1.00 64.47 C
ATOM 14 N1 C A 12 108.631 -23.624 39.005 1.00 54.34 N
ATOM 15 C2 C A 12 109.766 -22.821 38.968 1.00 52.92 C
ATOM 16 O2 C A 12 110.704 -23.156 38.238 1.00 53.68 O
ATOM 17 N3 C A 12 109.813 -21.702 39.731 1.00 51.37 N
ATOM 18 C4 C A 12 108.780 -21.387 40.515 1.00 51.38 C
ATOM 19 N4 C A 12 108.853 -20.267 41.238 1.00 50.15 N
ATOM 20 C5 C A 12 107.618 -22.204 40.589 1.00 52.40 C
ATOM 21 C6 C A 12 107.584 -23.301 39.823 1.00 53.46 C
ATOM 22 P A A 13 108.583 -28.558 41.175 1.00 99.56 P
ATOM 23 OP1 A A 13 108.298 -27.496 42.175 1.00133.73 O
ATOM 24 OP2 A A 13 109.971 -29.059 41.011 1.00134.03 O
ATOM 25 O5' A A 13 107.642 -29.800 41.500 1.00102.36 O
TER
ATOM 1 O3' C B 12 108.090 -28.048 39.733 1.00 75.29 O
ATOM 2 P A B 13 108.583 -28.558 41.175 1.00 99.56 P
ATOM 3 OP1 A B 13 108.298 -27.496 42.175 1.00133.73 O
ATOM 4 OP2 A B 13 109.971 -29.059 41.011 1.00134.03 O
ATOM 5 O5' A B 13 107.642 -29.800 41.500 1.00102.36 O
ATOM 6 C5' A B 13 106.222 -29.669 41.502 1.00108.52 C
ATOM 7 C4' A B 13 105.592 -30.896 42.119 1.00110.51 C
ATOM 8 O4' A B 13 106.165 -32.066 41.473 1.00113.36 O
ATOM 9 C3' A B 13 105.854 -31.094 43.607 1.00110.36 C
ATOM 10 O3' A B 13 104.825 -30.474 44.382 1.00104.65 O
ATOM 11 C2' A B 13 105.779 -32.609 43.745 1.00113.03 C
ATOM 12 O2' A B 13 104.443 -33.068 43.792 1.00114.57 O
ATOM 13 C1' A B 13 106.429 -33.068 42.437 1.00116.01 C
ATOM 14 N9 A B 13 107.881 -33.239 42.520 1.00155.32 N
ATOM 15 C8 A B 13 108.843 -32.265 42.396 1.00157.31 C
ATOM 16 N7 A B 13 110.069 -32.714 42.509 1.00158.67 N
ATOM 17 C5 A B 13 109.907 -34.075 42.722 1.00159.56 C
ATOM 18 C6 A B 13 110.831 -35.117 42.920 1.00161.05 C
ATOM 19 N6 A B 13 112.154 -34.941 42.931 1.00162.41 N
ATOM 20 N1 A B 13 110.342 -36.362 43.107 1.00161.48 N
ATOM 21 C2 A B 13 109.015 -36.538 43.092 1.00161.14 C
ATOM 22 N3 A B 13 108.046 -35.640 42.914 1.00160.08 N
ATOM 23 C4 A B 13 108.564 -34.413 42.733 1.00158.35 C
ATOM 24 P G B 14 105.195 -29.300 45.420 1.00 90.09 P
ATOM 25 OP1 G B 14 104.493 -28.060 44.985 1.00 73.47 O
ATOM 26 OP2 G B 14 106.675 -29.288 45.586 1.00 74.01 O
ATOM 27 O5' G B 14 104.549 -29.768 46.801 1.00 84.92 O
TER
ATOM 2 P C A 12 104.240 -25.055 41.086 1.00 45.72 P
ATOM 3 OP1 C A 12 103.593 -26.376 41.306 1.00 36.66 O
ATOM 4 OP2 C A 12 104.616 -24.216 42.253 1.00 38.69 O
ATOM 5 O5' C A 12 105.523 -25.296 40.176 1.00 48.91 O
ATOM 6 C5' C A 12 105.488 -26.243 39.116 1.00 57.33 C
ATOM 7 C4' C A 12 106.852 -26.371 38.495 1.00 63.31 C
ATOM 8 O4' C A 12 107.211 -25.101 37.892 1.00 63.73 O
ATOM 9 C3' C A 12 107.960 -26.650 39.491 1.00 68.08 C
ATOM 10 O3' C A 12 108.090 -28.048 39.733 1.00 75.29 O
ATOM 11 C2' C A 12 109.175 -26.067 38.788 1.00 67.43 C
ATOM 12 O2' C A 12 109.651 -26.926 37.774 1.00 69.82 O
ATOM 13 C1' C A 12 108.574 -24.816 38.146 1.00 64.47 C
ATOM 14 N1 C A 12 108.631 -23.624 39.005 1.00 54.34 N
ATOM 15 C2 C A 12 109.766 -22.821 38.968 1.00 52.92 C
ATOM 16 O2 C A 12 110.704 -23.156 38.238 1.00 53.68 O
ATOM 17 N3 C A 12 109.813 -21.702 39.731 1.00 51.37 N
ATOM 18 C4 C A 12 108.780 -21.387 40.515 1.00 51.38 C
ATOM 19 N4 C A 12 108.853 -20.267 41.238 1.00 50.15 N
ATOM 20 C5 C A 12 107.618 -22.204 40.589 1.00 52.40 C
ATOM 21 C6 C A 12 107.584 -23.301 39.823 1.00 53.46 C
ATOM 22 P A A 13 108.583 -28.558 41.175 1.00 99.56 P
ATOM 23 OP1 A A 13 108.298 -27.496 42.175 1.00133.73 O
ATOM 24 OP2 A A 13 109.971 -29.059 41.011 1.00134.03 O
ATOM 25 O5' A A 13 107.642 -29.800 41.500 1.00102.36 O
TER
ATOM 1 O3' C B 12 108.090 -28.048 39.733 1.00 75.29 O
ATOM 2 P A B 13 108.583 -28.558 41.175 1.00 99.56 P
ATOM 3 OP1 A B 13 108.298 -27.496 42.175 1.00133.73 O
ATOM 4 OP2 A B 13 109.971 -29.059 41.011 1.00134.03 O
ATOM 5 O5' A B 13 107.642 -29.800 41.500 1.00102.36 O
ATOM 6 C5' A B 13 106.222 -29.669 41.502 1.00108.52 C
ATOM 7 C4' A B 13 105.592 -30.896 42.119 1.00110.51 C
ATOM 8 O4' A B 13 106.165 -32.066 41.473 1.00113.36 O
ATOM 9 C3' A B 13 105.854 -31.094 43.607 1.00110.36 C
ATOM 10 O3' A B 13 104.825 -30.474 44.382 1.00104.65 O
ATOM 11 C2' A B 13 105.779 -32.609 43.745 1.00113.03 C
ATOM 12 O2' A B 13 104.443 -33.068 43.792 1.00114.57 O
ATOM 13 C1' A B 13 106.429 -33.068 42.437 1.00116.01 C
ATOM 14 N9 A B 13 107.881 -33.239 42.520 1.00155.32 N
ATOM 15 C8 A B 13 108.843 -32.265 42.396 1.00157.31 C
ATOM 16 N7 A B 13 110.069 -32.714 42.509 1.00158.67 N
ATOM 17 C5 A B 13 109.907 -34.075 42.722 1.00159.56 C
ATOM 18 C6 A B 13 110.831 -35.117 42.920 1.00161.05 C
ATOM 19 N6 A B 13 112.154 -34.941 42.931 1.00162.41 N
ATOM 20 N1 A B 13 110.342 -36.362 43.107 1.00161.48 N
ATOM 21 C2 A B 13 109.015 -36.538 43.092 1.00161.14 C
ATOM 22 N3 A B 13 108.046 -35.640 42.914 1.00160.08 N
ATOM 23 C4 A B 13 108.564 -34.413 42.733 1.00158.35 C
ATOM 24 P G B 14 105.195 -29.300 45.420 1.00 90.09 P
ATOM 25 OP1 G B 14 104.493 -28.060 44.985 1.00 73.47 O
ATOM 26 OP2 G B 14 106.675 -29.288 45.586 1.00 74.01 O
ATOM 27 O5' G B 14 104.549 -29.768 46.801 1.00 84.92 O
TER
Atoms:
C2: (109.766,-22.821,38.968)
OP1: (103.593,-26.376,41.306)
OP2: (104.616,-24.216,42.253)
C4: (108.780,-21.387,40.515)
O5': (105.523,-25.296,40.176)
C3': (107.960,-26.650,39.491)
C1': (108.574,-24.816,38.146)
O4': (107.211,-25.101,37.892)
C5': (105.488,-26.243,39.116)
P: (104.240,-25.055,41.086)
O2: (110.704,-23.156,38.238)
C4': (106.852,-26.371,38.495)
C2': (109.175,-26.067,38.788)
O2': (109.651,-26.926,37.774)
N1: (108.631,-23.624,39.005)
N3: (109.813,-21.702,39.731)
N4: (108.853,-20.267,41.238)
C6: (107.584,-23.301,39.823)
C5: (107.618,-22.204,40.589)
O3': (108.090,-28.048,39.733)
OP1: (103.593,-26.376,41.306)
OP2: (104.616,-24.216,42.253)
C4: (108.780,-21.387,40.515)
O5': (105.523,-25.296,40.176)
C3': (107.960,-26.650,39.491)
C1': (108.574,-24.816,38.146)
O4': (107.211,-25.101,37.892)
C5': (105.488,-26.243,39.116)
P: (104.240,-25.055,41.086)
O2: (110.704,-23.156,38.238)
C4': (106.852,-26.371,38.495)
C2': (109.175,-26.067,38.788)
O2': (109.651,-26.926,37.774)
N1: (108.631,-23.624,39.005)
N3: (109.813,-21.702,39.731)
N4: (108.853,-20.267,41.238)
C6: (107.584,-23.301,39.823)
C5: (107.618,-22.204,40.589)
O3': (108.090,-28.048,39.733)
OP1: (108.298,-27.496,42.175)
OP2: (109.971,-29.059,41.011)
C3': (105.854,-31.094,43.607)
C1': (106.429,-33.068,42.437)
C5': (106.222,-29.669,41.502)
O4': (106.165,-32.066,41.473)
C8: (108.843,-32.265,42.396)
O2': (104.443,-33.068,43.792)
C6: (110.831,-35.117,42.920)
C5: (109.907,-34.075,42.722)
C4: (108.564,-34.413,42.733)
P: (108.583,-28.558,41.175)
C4': (105.592,-30.896,42.119)
C2': (105.779,-32.609,43.745)
C2: (109.015,-36.538,43.092)
N1: (110.342,-36.362,43.107)
N3: (108.046,-35.640,42.914)
N6: (112.154,-34.941,42.931)
N7: (110.069,-32.714,42.509)
N9: (107.881,-33.239,42.520)
O5': (107.642,-29.800,41.500)
O3': (104.825,-30.474,44.382)
OP2: (109.971,-29.059,41.011)
C3': (105.854,-31.094,43.607)
C1': (106.429,-33.068,42.437)
C5': (106.222,-29.669,41.502)
O4': (106.165,-32.066,41.473)
C8: (108.843,-32.265,42.396)
O2': (104.443,-33.068,43.792)
C6: (110.831,-35.117,42.920)
C5: (109.907,-34.075,42.722)
C4: (108.564,-34.413,42.733)
P: (108.583,-28.558,41.175)
C4': (105.592,-30.896,42.119)
C2': (105.779,-32.609,43.745)
C2: (109.015,-36.538,43.092)
N1: (110.342,-36.362,43.107)
N3: (108.046,-35.640,42.914)
N6: (112.154,-34.941,42.931)
N7: (110.069,-32.714,42.509)
N9: (107.881,-33.239,42.520)
O5': (107.642,-29.800,41.500)
O3': (104.825,-30.474,44.382)
Image (generated by PyMOL):