Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1K8A:A1039:A1040
Extra
PDB:
ATOM 1 O3' A A1038 34.866 111.293 106.738 1.00 41.24 O
ATOM 2 P C A1039 34.619 110.191 105.604 1.00 41.88 P
ATOM 3 OP1 C A1039 34.630 110.987 104.357 1.00 41.10 O
ATOM 4 OP2 C A1039 33.458 109.330 105.925 1.00 41.93 O
ATOM 5 O5' C A1039 35.935 109.309 105.613 1.00 42.32 O
ATOM 6 C5' C A1039 37.002 109.580 104.699 1.00 43.35 C
ATOM 7 C4' C A1039 38.071 108.569 104.899 1.00 45.82 C
ATOM 8 O4' C A1039 38.445 108.626 106.307 1.00 47.67 O
ATOM 9 C3' C A1039 37.576 107.142 104.747 1.00 47.80 C
ATOM 10 O3' C A1039 37.422 106.608 103.415 1.00 48.73 O
ATOM 11 C2' C A1039 38.625 106.401 105.567 1.00 49.55 C
ATOM 12 O2' C A1039 39.901 106.394 104.939 1.00 48.44 O
ATOM 13 C1' C A1039 38.721 107.316 106.787 1.00 49.09 C
ATOM 14 N1 C A1039 37.746 106.951 107.855 1.00 49.47 N
ATOM 15 C2 C A1039 38.189 106.145 108.919 1.00 50.37 C
ATOM 16 O2 C A1039 39.383 105.792 108.960 1.00 53.90 O
ATOM 17 N3 C A1039 37.308 105.771 109.876 1.00 49.09 N
ATOM 18 C4 C A1039 36.038 106.168 109.809 1.00 47.16 C
ATOM 19 N4 C A1039 35.211 105.754 110.771 1.00 45.02 N
ATOM 20 C5 C A1039 35.562 106.998 108.755 1.00 46.98 C
ATOM 21 C6 C A1039 36.439 107.364 107.809 1.00 47.69 C
ATOM 22 P A A1040 38.166 107.276 102.152 1.00 49.78 P
ATOM 23 OP1 A A1040 39.393 107.947 102.651 1.00 49.06 O
ATOM 24 OP2 A A1040 37.196 108.039 101.311 1.00 49.88 O
ATOM 25 O5' A A1040 38.618 106.007 101.298 1.00 46.11 O
TER
ATOM 1 O3' C B1039 37.422 106.608 103.415 1.00 48.73 O
ATOM 2 P A B1040 38.166 107.276 102.152 1.00 49.78 P
ATOM 3 OP1 A B1040 39.393 107.947 102.651 1.00 49.06 O
ATOM 4 OP2 A B1040 37.196 108.039 101.311 1.00 49.88 O
ATOM 5 O5' A B1040 38.618 106.007 101.298 1.00 46.11 O
ATOM 6 C5' A B1040 38.765 104.722 101.919 1.00 40.96 C
ATOM 7 C4' A B1040 38.797 103.630 100.886 1.00 38.84 C
ATOM 8 O4' A B1040 39.842 103.876 99.922 1.00 37.04 O
ATOM 9 C3' A B1040 39.138 102.265 101.452 1.00 38.50 C
ATOM 10 O3' A B1040 37.969 101.651 101.943 1.00 38.79 O
ATOM 11 C2' A B1040 39.647 101.516 100.232 1.00 38.94 C
ATOM 12 O2' A B1040 38.613 101.013 99.420 1.00 41.28 O
ATOM 13 C1' A B1040 40.361 102.634 99.476 1.00 37.16 C
ATOM 14 N9 A B1040 41.804 102.617 99.692 1.00 35.77 N
ATOM 15 C8 A B1040 42.557 103.181 100.682 1.00 35.26 C
ATOM 16 N7 A B1040 43.842 103.014 100.518 1.00 35.52 N
ATOM 17 C5 A B1040 43.940 102.282 99.351 1.00 33.54 C
ATOM 18 C6 A B1040 45.040 101.798 98.625 1.00 32.27 C
ATOM 19 N6 A B1040 46.310 102.004 98.958 1.00 30.35 N
ATOM 20 N1 A B1040 44.785 101.088 97.515 1.00 33.69 N
ATOM 21 C2 A B1040 43.514 100.892 97.161 1.00 33.92 C
ATOM 22 N3 A B1040 42.408 101.307 97.750 1.00 34.39 N
ATOM 23 C4 A B1040 42.693 102.008 98.850 1.00 34.30 C
ATOM 24 P A B1041 37.827 101.323 103.498 1.00 38.80 P
ATOM 25 OP1 A B1041 36.430 101.639 103.830 1.00 37.75 O
ATOM 26 OP2 A B1041 38.918 101.947 104.261 1.00 39.55 O
ATOM 27 O5' A B1041 38.024 99.750 103.567 1.00 37.43 O
TER
ATOM 2 P C A1039 34.619 110.191 105.604 1.00 41.88 P
ATOM 3 OP1 C A1039 34.630 110.987 104.357 1.00 41.10 O
ATOM 4 OP2 C A1039 33.458 109.330 105.925 1.00 41.93 O
ATOM 5 O5' C A1039 35.935 109.309 105.613 1.00 42.32 O
ATOM 6 C5' C A1039 37.002 109.580 104.699 1.00 43.35 C
ATOM 7 C4' C A1039 38.071 108.569 104.899 1.00 45.82 C
ATOM 8 O4' C A1039 38.445 108.626 106.307 1.00 47.67 O
ATOM 9 C3' C A1039 37.576 107.142 104.747 1.00 47.80 C
ATOM 10 O3' C A1039 37.422 106.608 103.415 1.00 48.73 O
ATOM 11 C2' C A1039 38.625 106.401 105.567 1.00 49.55 C
ATOM 12 O2' C A1039 39.901 106.394 104.939 1.00 48.44 O
ATOM 13 C1' C A1039 38.721 107.316 106.787 1.00 49.09 C
ATOM 14 N1 C A1039 37.746 106.951 107.855 1.00 49.47 N
ATOM 15 C2 C A1039 38.189 106.145 108.919 1.00 50.37 C
ATOM 16 O2 C A1039 39.383 105.792 108.960 1.00 53.90 O
ATOM 17 N3 C A1039 37.308 105.771 109.876 1.00 49.09 N
ATOM 18 C4 C A1039 36.038 106.168 109.809 1.00 47.16 C
ATOM 19 N4 C A1039 35.211 105.754 110.771 1.00 45.02 N
ATOM 20 C5 C A1039 35.562 106.998 108.755 1.00 46.98 C
ATOM 21 C6 C A1039 36.439 107.364 107.809 1.00 47.69 C
ATOM 22 P A A1040 38.166 107.276 102.152 1.00 49.78 P
ATOM 23 OP1 A A1040 39.393 107.947 102.651 1.00 49.06 O
ATOM 24 OP2 A A1040 37.196 108.039 101.311 1.00 49.88 O
ATOM 25 O5' A A1040 38.618 106.007 101.298 1.00 46.11 O
TER
ATOM 1 O3' C B1039 37.422 106.608 103.415 1.00 48.73 O
ATOM 2 P A B1040 38.166 107.276 102.152 1.00 49.78 P
ATOM 3 OP1 A B1040 39.393 107.947 102.651 1.00 49.06 O
ATOM 4 OP2 A B1040 37.196 108.039 101.311 1.00 49.88 O
ATOM 5 O5' A B1040 38.618 106.007 101.298 1.00 46.11 O
ATOM 6 C5' A B1040 38.765 104.722 101.919 1.00 40.96 C
ATOM 7 C4' A B1040 38.797 103.630 100.886 1.00 38.84 C
ATOM 8 O4' A B1040 39.842 103.876 99.922 1.00 37.04 O
ATOM 9 C3' A B1040 39.138 102.265 101.452 1.00 38.50 C
ATOM 10 O3' A B1040 37.969 101.651 101.943 1.00 38.79 O
ATOM 11 C2' A B1040 39.647 101.516 100.232 1.00 38.94 C
ATOM 12 O2' A B1040 38.613 101.013 99.420 1.00 41.28 O
ATOM 13 C1' A B1040 40.361 102.634 99.476 1.00 37.16 C
ATOM 14 N9 A B1040 41.804 102.617 99.692 1.00 35.77 N
ATOM 15 C8 A B1040 42.557 103.181 100.682 1.00 35.26 C
ATOM 16 N7 A B1040 43.842 103.014 100.518 1.00 35.52 N
ATOM 17 C5 A B1040 43.940 102.282 99.351 1.00 33.54 C
ATOM 18 C6 A B1040 45.040 101.798 98.625 1.00 32.27 C
ATOM 19 N6 A B1040 46.310 102.004 98.958 1.00 30.35 N
ATOM 20 N1 A B1040 44.785 101.088 97.515 1.00 33.69 N
ATOM 21 C2 A B1040 43.514 100.892 97.161 1.00 33.92 C
ATOM 22 N3 A B1040 42.408 101.307 97.750 1.00 34.39 N
ATOM 23 C4 A B1040 42.693 102.008 98.850 1.00 34.30 C
ATOM 24 P A B1041 37.827 101.323 103.498 1.00 38.80 P
ATOM 25 OP1 A B1041 36.430 101.639 103.830 1.00 37.75 O
ATOM 26 OP2 A B1041 38.918 101.947 104.261 1.00 39.55 O
ATOM 27 O5' A B1041 38.024 99.750 103.567 1.00 37.43 O
TER
Atoms:
C2: (38.189,106.145,108.919)
OP1: (34.630,110.987,104.357)
OP2: (33.458,109.330,105.925)
C4: (36.038,106.168,109.809)
O5': (35.935,109.309,105.613)
C3': (37.576,107.142,104.747)
C1': (38.721,107.316,106.787)
O4': (38.445,108.626,106.307)
C5': (37.002,109.580,104.699)
P: (34.619,110.191,105.604)
O2: (39.383,105.792,108.960)
C4': (38.071,108.569,104.899)
C2': (38.625,106.401,105.567)
O2': (39.901,106.394,104.939)
N1: (37.746,106.951,107.855)
N3: (37.308,105.771,109.876)
N4: (35.211,105.754,110.771)
C6: (36.439,107.364,107.809)
C5: (35.562,106.998,108.755)
O3': (37.422,106.608,103.415)
OP1: (34.630,110.987,104.357)
OP2: (33.458,109.330,105.925)
C4: (36.038,106.168,109.809)
O5': (35.935,109.309,105.613)
C3': (37.576,107.142,104.747)
C1': (38.721,107.316,106.787)
O4': (38.445,108.626,106.307)
C5': (37.002,109.580,104.699)
P: (34.619,110.191,105.604)
O2: (39.383,105.792,108.960)
C4': (38.071,108.569,104.899)
C2': (38.625,106.401,105.567)
O2': (39.901,106.394,104.939)
N1: (37.746,106.951,107.855)
N3: (37.308,105.771,109.876)
N4: (35.211,105.754,110.771)
C6: (36.439,107.364,107.809)
C5: (35.562,106.998,108.755)
O3': (37.422,106.608,103.415)
OP1: (39.393,107.947,102.651)
OP2: (37.196,108.039,101.311)
C3': (39.138,102.265,101.452)
C1': (40.361,102.634,99.476)
C5': (38.765,104.722,101.919)
O4': (39.842,103.876,99.922)
C8: (42.557,103.181,100.682)
O2': (38.613,101.013,99.420)
C6: (45.040,101.798,98.625)
C5: (43.940,102.282,99.351)
C4: (42.693,102.008,98.850)
P: (38.166,107.276,102.152)
C4': (38.797,103.630,100.886)
C2': (39.647,101.516,100.232)
C2: (43.514,100.892,97.161)
N1: (44.785,101.088,97.515)
N3: (42.408,101.307,97.750)
N6: (46.310,102.004,98.958)
N7: (43.842,103.014,100.518)
N9: (41.804,102.617,99.692)
O5': (38.618,106.007,101.298)
O3': (37.969,101.651,101.943)
OP2: (37.196,108.039,101.311)
C3': (39.138,102.265,101.452)
C1': (40.361,102.634,99.476)
C5': (38.765,104.722,101.919)
O4': (39.842,103.876,99.922)
C8: (42.557,103.181,100.682)
O2': (38.613,101.013,99.420)
C6: (45.040,101.798,98.625)
C5: (43.940,102.282,99.351)
C4: (42.693,102.008,98.850)
P: (38.166,107.276,102.152)
C4': (38.797,103.630,100.886)
C2': (39.647,101.516,100.232)
C2: (43.514,100.892,97.161)
N1: (44.785,101.088,97.515)
N3: (42.408,101.307,97.750)
N6: (46.310,102.004,98.958)
N7: (43.842,103.014,100.518)
N9: (41.804,102.617,99.692)
O5': (38.618,106.007,101.298)
O3': (37.969,101.651,101.943)
Image (generated by PyMOL):