Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1039:A1040
Extra
PDB:
ATOM 1 O3' A A1038 34.811 111.282 106.739 1.00 41.22 O
ATOM 2 P C A1039 34.509 110.185 105.608 1.00 42.20 P
ATOM 3 OP1 C A1039 34.441 110.985 104.355 1.00 41.72 O
ATOM 4 OP2 C A1039 33.380 109.297 105.979 1.00 42.07 O
ATOM 5 O5' C A1039 35.824 109.300 105.563 1.00 44.31 O
ATOM 6 C5' C A1039 36.912 109.616 104.685 1.00 45.13 C
ATOM 7 C4' C A1039 38.001 108.612 104.881 1.00 48.45 C
ATOM 8 O4' C A1039 38.411 108.676 106.279 1.00 50.61 O
ATOM 9 C3' C A1039 37.532 107.170 104.737 1.00 50.68 C
ATOM 10 O3' C A1039 37.424 106.612 103.415 1.00 52.20 O
ATOM 11 C2' C A1039 38.598 106.445 105.543 1.00 52.19 C
ATOM 12 O2' C A1039 39.843 106.421 104.858 1.00 52.03 O
ATOM 13 C1' C A1039 38.718 107.366 106.758 1.00 51.88 C
ATOM 14 N1 C A1039 37.761 106.992 107.840 1.00 52.23 N
ATOM 15 C2 C A1039 38.224 106.248 108.945 1.00 52.65 C
ATOM 16 O2 C A1039 39.435 105.954 109.022 1.00 55.95 O
ATOM 17 N3 C A1039 37.340 105.869 109.900 1.00 50.59 N
ATOM 18 C4 C A1039 36.053 106.212 109.802 1.00 49.59 C
ATOM 19 N4 C A1039 35.228 105.814 110.773 1.00 48.54 N
ATOM 20 C5 C A1039 35.560 106.978 108.710 1.00 49.99 C
ATOM 21 C6 C A1039 36.438 107.343 107.761 1.00 50.72 C
ATOM 22 P A A1040 38.184 107.283 102.167 1.00 54.06 P
ATOM 23 OP1 A A1040 39.399 107.971 102.670 1.00 53.49 O
ATOM 24 OP2 A A1040 37.197 108.032 101.337 1.00 54.86 O
ATOM 25 O5' A A1040 38.658 106.025 101.315 1.00 49.77 O
TER
ATOM 1 O3' C B1039 37.424 106.612 103.415 1.00 52.20 O
ATOM 2 P A B1040 38.184 107.283 102.167 1.00 54.06 P
ATOM 3 OP1 A B1040 39.399 107.971 102.670 1.00 53.49 O
ATOM 4 OP2 A B1040 37.197 108.032 101.337 1.00 54.86 O
ATOM 5 O5' A B1040 38.658 106.025 101.315 1.00 49.77 O
ATOM 6 C5' A B1040 38.758 104.739 101.925 1.00 43.68 C
ATOM 7 C4' A B1040 38.781 103.665 100.884 1.00 41.34 C
ATOM 8 O4' A B1040 39.813 103.942 99.915 1.00 39.52 O
ATOM 9 C3' A B1040 39.145 102.306 101.443 1.00 40.71 C
ATOM 10 O3' A B1040 37.980 101.659 101.933 1.00 38.92 O
ATOM 11 C2' A B1040 39.679 101.580 100.216 1.00 41.17 C
ATOM 12 O2' A B1040 38.668 101.023 99.410 1.00 43.70 O
ATOM 13 C1' A B1040 40.351 102.720 99.448 1.00 39.76 C
ATOM 14 N9 A B1040 41.802 102.732 99.624 1.00 39.46 N
ATOM 15 C8 A B1040 42.556 103.291 100.617 1.00 38.66 C
ATOM 16 N7 A B1040 43.839 103.086 100.480 1.00 39.51 N
ATOM 17 C5 A B1040 43.943 102.350 99.311 1.00 37.65 C
ATOM 18 C6 A B1040 45.054 101.807 98.612 1.00 36.07 C
ATOM 19 N6 A B1040 46.319 101.928 99.004 1.00 32.41 N
ATOM 20 N1 A B1040 44.804 101.121 97.482 1.00 36.66 N
ATOM 21 C2 A B1040 43.537 100.990 97.085 1.00 36.18 C
ATOM 22 N3 A B1040 42.424 101.448 97.648 1.00 37.41 N
ATOM 23 C4 A B1040 42.697 102.127 98.772 1.00 38.06 C
ATOM 24 P A B1041 37.806 101.367 103.502 1.00 38.06 P
ATOM 25 OP1 A B1041 36.402 101.715 103.797 1.00 38.02 O
ATOM 26 OP2 A B1041 38.890 101.966 104.300 1.00 36.50 O
ATOM 27 O5' A B1041 37.978 99.793 103.598 1.00 36.35 O
TER
ATOM 2 P C A1039 34.509 110.185 105.608 1.00 42.20 P
ATOM 3 OP1 C A1039 34.441 110.985 104.355 1.00 41.72 O
ATOM 4 OP2 C A1039 33.380 109.297 105.979 1.00 42.07 O
ATOM 5 O5' C A1039 35.824 109.300 105.563 1.00 44.31 O
ATOM 6 C5' C A1039 36.912 109.616 104.685 1.00 45.13 C
ATOM 7 C4' C A1039 38.001 108.612 104.881 1.00 48.45 C
ATOM 8 O4' C A1039 38.411 108.676 106.279 1.00 50.61 O
ATOM 9 C3' C A1039 37.532 107.170 104.737 1.00 50.68 C
ATOM 10 O3' C A1039 37.424 106.612 103.415 1.00 52.20 O
ATOM 11 C2' C A1039 38.598 106.445 105.543 1.00 52.19 C
ATOM 12 O2' C A1039 39.843 106.421 104.858 1.00 52.03 O
ATOM 13 C1' C A1039 38.718 107.366 106.758 1.00 51.88 C
ATOM 14 N1 C A1039 37.761 106.992 107.840 1.00 52.23 N
ATOM 15 C2 C A1039 38.224 106.248 108.945 1.00 52.65 C
ATOM 16 O2 C A1039 39.435 105.954 109.022 1.00 55.95 O
ATOM 17 N3 C A1039 37.340 105.869 109.900 1.00 50.59 N
ATOM 18 C4 C A1039 36.053 106.212 109.802 1.00 49.59 C
ATOM 19 N4 C A1039 35.228 105.814 110.773 1.00 48.54 N
ATOM 20 C5 C A1039 35.560 106.978 108.710 1.00 49.99 C
ATOM 21 C6 C A1039 36.438 107.343 107.761 1.00 50.72 C
ATOM 22 P A A1040 38.184 107.283 102.167 1.00 54.06 P
ATOM 23 OP1 A A1040 39.399 107.971 102.670 1.00 53.49 O
ATOM 24 OP2 A A1040 37.197 108.032 101.337 1.00 54.86 O
ATOM 25 O5' A A1040 38.658 106.025 101.315 1.00 49.77 O
TER
ATOM 1 O3' C B1039 37.424 106.612 103.415 1.00 52.20 O
ATOM 2 P A B1040 38.184 107.283 102.167 1.00 54.06 P
ATOM 3 OP1 A B1040 39.399 107.971 102.670 1.00 53.49 O
ATOM 4 OP2 A B1040 37.197 108.032 101.337 1.00 54.86 O
ATOM 5 O5' A B1040 38.658 106.025 101.315 1.00 49.77 O
ATOM 6 C5' A B1040 38.758 104.739 101.925 1.00 43.68 C
ATOM 7 C4' A B1040 38.781 103.665 100.884 1.00 41.34 C
ATOM 8 O4' A B1040 39.813 103.942 99.915 1.00 39.52 O
ATOM 9 C3' A B1040 39.145 102.306 101.443 1.00 40.71 C
ATOM 10 O3' A B1040 37.980 101.659 101.933 1.00 38.92 O
ATOM 11 C2' A B1040 39.679 101.580 100.216 1.00 41.17 C
ATOM 12 O2' A B1040 38.668 101.023 99.410 1.00 43.70 O
ATOM 13 C1' A B1040 40.351 102.720 99.448 1.00 39.76 C
ATOM 14 N9 A B1040 41.802 102.732 99.624 1.00 39.46 N
ATOM 15 C8 A B1040 42.556 103.291 100.617 1.00 38.66 C
ATOM 16 N7 A B1040 43.839 103.086 100.480 1.00 39.51 N
ATOM 17 C5 A B1040 43.943 102.350 99.311 1.00 37.65 C
ATOM 18 C6 A B1040 45.054 101.807 98.612 1.00 36.07 C
ATOM 19 N6 A B1040 46.319 101.928 99.004 1.00 32.41 N
ATOM 20 N1 A B1040 44.804 101.121 97.482 1.00 36.66 N
ATOM 21 C2 A B1040 43.537 100.990 97.085 1.00 36.18 C
ATOM 22 N3 A B1040 42.424 101.448 97.648 1.00 37.41 N
ATOM 23 C4 A B1040 42.697 102.127 98.772 1.00 38.06 C
ATOM 24 P A B1041 37.806 101.367 103.502 1.00 38.06 P
ATOM 25 OP1 A B1041 36.402 101.715 103.797 1.00 38.02 O
ATOM 26 OP2 A B1041 38.890 101.966 104.300 1.00 36.50 O
ATOM 27 O5' A B1041 37.978 99.793 103.598 1.00 36.35 O
TER
Atoms:
C2: (38.224,106.248,108.945)
OP1: (34.441,110.985,104.355)
OP2: (33.380,109.297,105.979)
C4: (36.053,106.212,109.802)
O5': (35.824,109.300,105.563)
C3': (37.532,107.170,104.737)
C1': (38.718,107.366,106.758)
O4': (38.411,108.676,106.279)
C5': (36.912,109.616,104.685)
P: (34.509,110.185,105.608)
O2: (39.435,105.954,109.022)
C4': (38.001,108.612,104.881)
C2': (38.598,106.445,105.543)
O2': (39.843,106.421,104.858)
N1: (37.761,106.992,107.840)
N3: (37.340,105.869,109.900)
N4: (35.228,105.814,110.773)
C6: (36.438,107.343,107.761)
C5: (35.560,106.978,108.710)
O3': (37.424,106.612,103.415)
OP1: (34.441,110.985,104.355)
OP2: (33.380,109.297,105.979)
C4: (36.053,106.212,109.802)
O5': (35.824,109.300,105.563)
C3': (37.532,107.170,104.737)
C1': (38.718,107.366,106.758)
O4': (38.411,108.676,106.279)
C5': (36.912,109.616,104.685)
P: (34.509,110.185,105.608)
O2: (39.435,105.954,109.022)
C4': (38.001,108.612,104.881)
C2': (38.598,106.445,105.543)
O2': (39.843,106.421,104.858)
N1: (37.761,106.992,107.840)
N3: (37.340,105.869,109.900)
N4: (35.228,105.814,110.773)
C6: (36.438,107.343,107.761)
C5: (35.560,106.978,108.710)
O3': (37.424,106.612,103.415)
OP1: (39.399,107.971,102.670)
OP2: (37.197,108.032,101.337)
C3': (39.145,102.306,101.443)
C1': (40.351,102.720,99.448)
C5': (38.758,104.739,101.925)
O4': (39.813,103.942,99.915)
C8: (42.556,103.291,100.617)
O2': (38.668,101.023,99.410)
C6: (45.054,101.807,98.612)
C5: (43.943,102.350,99.311)
C4: (42.697,102.127,98.772)
P: (38.184,107.283,102.167)
C4': (38.781,103.665,100.884)
C2': (39.679,101.580,100.216)
C2: (43.537,100.990,97.085)
N1: (44.804,101.121,97.482)
N3: (42.424,101.448,97.648)
N6: (46.319,101.928,99.004)
N7: (43.839,103.086,100.480)
N9: (41.802,102.732,99.624)
O5': (38.658,106.025,101.315)
O3': (37.980,101.659,101.933)
OP2: (37.197,108.032,101.337)
C3': (39.145,102.306,101.443)
C1': (40.351,102.720,99.448)
C5': (38.758,104.739,101.925)
O4': (39.813,103.942,99.915)
C8: (42.556,103.291,100.617)
O2': (38.668,101.023,99.410)
C6: (45.054,101.807,98.612)
C5: (43.943,102.350,99.311)
C4: (42.697,102.127,98.772)
P: (38.184,107.283,102.167)
C4': (38.781,103.665,100.884)
C2': (39.679,101.580,100.216)
C2: (43.537,100.990,97.085)
N1: (44.804,101.121,97.482)
N3: (42.424,101.448,97.648)
N6: (46.319,101.928,99.004)
N7: (43.839,103.086,100.480)
N9: (41.802,102.732,99.624)
O5': (38.658,106.025,101.315)
O3': (37.980,101.659,101.933)
Image (generated by PyMOL):