Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ5:01039:01040
Extra
PDB:
ATOM 1 O3' A A1038 34.295 111.011 106.470 1.00 41.84 O
ATOM 2 P C A1039 34.013 109.905 105.345 1.00 44.47 P
ATOM 3 OP1 C A1039 33.887 110.658 104.083 1.00 42.48 O
ATOM 4 OP2 C A1039 32.917 108.988 105.771 1.00 43.44 O
ATOM 5 O5' C A1039 35.328 109.015 105.323 1.00 46.36 O
ATOM 6 C5' C A1039 36.433 109.303 104.469 1.00 49.52 C
ATOM 7 C4' C A1039 37.533 108.310 104.741 1.00 53.46 C
ATOM 8 O4' C A1039 37.900 108.422 106.147 1.00 55.48 O
ATOM 9 C3' C A1039 37.116 106.849 104.629 1.00 55.70 C
ATOM 10 O3' C A1039 37.089 106.237 103.341 1.00 56.59 O
ATOM 11 C2' C A1039 38.186 106.185 105.477 1.00 57.42 C
ATOM 12 O2' C A1039 39.457 106.174 104.840 1.00 58.54 O
ATOM 13 C1' C A1039 38.223 107.137 106.666 1.00 56.42 C
ATOM 14 N1 C A1039 37.208 106.747 107.674 1.00 57.62 N
ATOM 15 C2 C A1039 37.592 105.916 108.746 1.00 58.92 C
ATOM 16 O2 C A1039 38.768 105.523 108.819 1.00 61.94 O
ATOM 17 N3 C A1039 36.670 105.562 109.671 1.00 58.41 N
ATOM 18 C4 C A1039 35.412 105.999 109.562 1.00 58.43 C
ATOM 19 N4 C A1039 34.535 105.638 110.511 1.00 57.20 N
ATOM 20 C5 C A1039 34.994 106.829 108.481 1.00 56.92 C
ATOM 21 C6 C A1039 35.914 107.176 107.572 1.00 56.04 C
ATOM 22 P A A1040 37.742 106.957 102.067 1.00 57.53 P
ATOM 23 OP1 A A1040 39.004 107.620 102.482 1.00 57.28 O
ATOM 24 OP2 A A1040 36.682 107.744 101.390 1.00 57.31 O
ATOM 25 O5' A A1040 38.143 105.719 101.149 1.00 51.23 O
TER
ATOM 1 O3' C B1039 37.089 106.237 103.341 1.00 56.59 O
ATOM 2 P A B1040 37.742 106.957 102.067 1.00 57.53 P
ATOM 3 OP1 A B1040 39.004 107.620 102.482 1.00 57.28 O
ATOM 4 OP2 A B1040 36.682 107.744 101.390 1.00 57.31 O
ATOM 5 O5' A B1040 38.143 105.719 101.149 1.00 51.23 O
ATOM 6 C5' A B1040 38.416 104.434 101.736 1.00 41.26 C
ATOM 7 C4' A B1040 38.424 103.376 100.674 1.00 38.37 C
ATOM 8 O4' A B1040 39.489 103.651 99.739 1.00 35.80 O
ATOM 9 C3' A B1040 38.705 101.970 101.154 1.00 39.08 C
ATOM 10 O3' A B1040 37.491 101.374 101.607 1.00 42.24 O
ATOM 11 C2' A B1040 39.203 101.296 99.881 1.00 39.28 C
ATOM 12 O2' A B1040 38.151 100.903 99.024 1.00 42.42 O
ATOM 13 C1' A B1040 39.973 102.437 99.208 1.00 36.72 C
ATOM 14 N9 A B1040 41.426 102.406 99.379 1.00 35.24 N
ATOM 15 C8 A B1040 42.167 102.987 100.378 1.00 34.00 C
ATOM 16 N7 A B1040 43.455 102.820 100.242 1.00 34.28 N
ATOM 17 C5 A B1040 43.574 102.070 99.083 1.00 34.23 C
ATOM 18 C6 A B1040 44.688 101.553 98.404 1.00 34.89 C
ATOM 19 N6 A B1040 45.943 101.735 98.808 1.00 31.82 N
ATOM 20 N1 A B1040 44.463 100.829 97.281 1.00 36.15 N
ATOM 21 C2 A B1040 43.202 100.649 96.881 1.00 32.62 C
ATOM 22 N3 A B1040 42.075 101.090 97.435 1.00 33.28 N
ATOM 23 C4 A B1040 42.333 101.800 98.545 1.00 33.34 C
ATOM 24 P A B1041 37.260 101.073 103.174 1.00 39.64 P
ATOM 25 OP1 A B1041 35.819 101.350 103.417 1.00 40.46 O
ATOM 26 OP2 A B1041 38.284 101.762 103.999 1.00 40.88 O
ATOM 27 O5' A B1041 37.499 99.504 103.278 1.00 39.43 O
TER
ATOM 2 P C A1039 34.013 109.905 105.345 1.00 44.47 P
ATOM 3 OP1 C A1039 33.887 110.658 104.083 1.00 42.48 O
ATOM 4 OP2 C A1039 32.917 108.988 105.771 1.00 43.44 O
ATOM 5 O5' C A1039 35.328 109.015 105.323 1.00 46.36 O
ATOM 6 C5' C A1039 36.433 109.303 104.469 1.00 49.52 C
ATOM 7 C4' C A1039 37.533 108.310 104.741 1.00 53.46 C
ATOM 8 O4' C A1039 37.900 108.422 106.147 1.00 55.48 O
ATOM 9 C3' C A1039 37.116 106.849 104.629 1.00 55.70 C
ATOM 10 O3' C A1039 37.089 106.237 103.341 1.00 56.59 O
ATOM 11 C2' C A1039 38.186 106.185 105.477 1.00 57.42 C
ATOM 12 O2' C A1039 39.457 106.174 104.840 1.00 58.54 O
ATOM 13 C1' C A1039 38.223 107.137 106.666 1.00 56.42 C
ATOM 14 N1 C A1039 37.208 106.747 107.674 1.00 57.62 N
ATOM 15 C2 C A1039 37.592 105.916 108.746 1.00 58.92 C
ATOM 16 O2 C A1039 38.768 105.523 108.819 1.00 61.94 O
ATOM 17 N3 C A1039 36.670 105.562 109.671 1.00 58.41 N
ATOM 18 C4 C A1039 35.412 105.999 109.562 1.00 58.43 C
ATOM 19 N4 C A1039 34.535 105.638 110.511 1.00 57.20 N
ATOM 20 C5 C A1039 34.994 106.829 108.481 1.00 56.92 C
ATOM 21 C6 C A1039 35.914 107.176 107.572 1.00 56.04 C
ATOM 22 P A A1040 37.742 106.957 102.067 1.00 57.53 P
ATOM 23 OP1 A A1040 39.004 107.620 102.482 1.00 57.28 O
ATOM 24 OP2 A A1040 36.682 107.744 101.390 1.00 57.31 O
ATOM 25 O5' A A1040 38.143 105.719 101.149 1.00 51.23 O
TER
ATOM 1 O3' C B1039 37.089 106.237 103.341 1.00 56.59 O
ATOM 2 P A B1040 37.742 106.957 102.067 1.00 57.53 P
ATOM 3 OP1 A B1040 39.004 107.620 102.482 1.00 57.28 O
ATOM 4 OP2 A B1040 36.682 107.744 101.390 1.00 57.31 O
ATOM 5 O5' A B1040 38.143 105.719 101.149 1.00 51.23 O
ATOM 6 C5' A B1040 38.416 104.434 101.736 1.00 41.26 C
ATOM 7 C4' A B1040 38.424 103.376 100.674 1.00 38.37 C
ATOM 8 O4' A B1040 39.489 103.651 99.739 1.00 35.80 O
ATOM 9 C3' A B1040 38.705 101.970 101.154 1.00 39.08 C
ATOM 10 O3' A B1040 37.491 101.374 101.607 1.00 42.24 O
ATOM 11 C2' A B1040 39.203 101.296 99.881 1.00 39.28 C
ATOM 12 O2' A B1040 38.151 100.903 99.024 1.00 42.42 O
ATOM 13 C1' A B1040 39.973 102.437 99.208 1.00 36.72 C
ATOM 14 N9 A B1040 41.426 102.406 99.379 1.00 35.24 N
ATOM 15 C8 A B1040 42.167 102.987 100.378 1.00 34.00 C
ATOM 16 N7 A B1040 43.455 102.820 100.242 1.00 34.28 N
ATOM 17 C5 A B1040 43.574 102.070 99.083 1.00 34.23 C
ATOM 18 C6 A B1040 44.688 101.553 98.404 1.00 34.89 C
ATOM 19 N6 A B1040 45.943 101.735 98.808 1.00 31.82 N
ATOM 20 N1 A B1040 44.463 100.829 97.281 1.00 36.15 N
ATOM 21 C2 A B1040 43.202 100.649 96.881 1.00 32.62 C
ATOM 22 N3 A B1040 42.075 101.090 97.435 1.00 33.28 N
ATOM 23 C4 A B1040 42.333 101.800 98.545 1.00 33.34 C
ATOM 24 P A B1041 37.260 101.073 103.174 1.00 39.64 P
ATOM 25 OP1 A B1041 35.819 101.350 103.417 1.00 40.46 O
ATOM 26 OP2 A B1041 38.284 101.762 103.999 1.00 40.88 O
ATOM 27 O5' A B1041 37.499 99.504 103.278 1.00 39.43 O
TER
Atoms:
C2: (37.592,105.916,108.746)
OP1: (33.887,110.658,104.083)
OP2: (32.917,108.988,105.771)
C4: (35.412,105.999,109.562)
O5': (35.328,109.015,105.323)
C3': (37.116,106.849,104.629)
C1': (38.223,107.137,106.666)
O4': (37.900,108.422,106.147)
C5': (36.433,109.303,104.469)
P: (34.013,109.905,105.345)
O2: (38.768,105.523,108.819)
C4': (37.533,108.310,104.741)
C2': (38.186,106.185,105.477)
O2': (39.457,106.174,104.840)
N1: (37.208,106.747,107.674)
N3: (36.670,105.562,109.671)
N4: (34.535,105.638,110.511)
C6: (35.914,107.176,107.572)
C5: (34.994,106.829,108.481)
O3': (37.089,106.237,103.341)
OP1: (33.887,110.658,104.083)
OP2: (32.917,108.988,105.771)
C4: (35.412,105.999,109.562)
O5': (35.328,109.015,105.323)
C3': (37.116,106.849,104.629)
C1': (38.223,107.137,106.666)
O4': (37.900,108.422,106.147)
C5': (36.433,109.303,104.469)
P: (34.013,109.905,105.345)
O2: (38.768,105.523,108.819)
C4': (37.533,108.310,104.741)
C2': (38.186,106.185,105.477)
O2': (39.457,106.174,104.840)
N1: (37.208,106.747,107.674)
N3: (36.670,105.562,109.671)
N4: (34.535,105.638,110.511)
C6: (35.914,107.176,107.572)
C5: (34.994,106.829,108.481)
O3': (37.089,106.237,103.341)
OP1: (39.004,107.620,102.482)
OP2: (36.682,107.744,101.390)
C3': (38.705,101.970,101.154)
C1': (39.973,102.437,99.208)
C5': (38.416,104.434,101.736)
O4': (39.489,103.651,99.739)
C8: (42.167,102.987,100.378)
O2': (38.151,100.903,99.024)
C6: (44.688,101.553,98.404)
C5: (43.574,102.070,99.083)
C4: (42.333,101.800,98.545)
P: (37.742,106.957,102.067)
C4': (38.424,103.376,100.674)
C2': (39.203,101.296,99.881)
C2: (43.202,100.649,96.881)
N1: (44.463,100.829,97.281)
N3: (42.075,101.090,97.435)
N6: (45.943,101.735,98.808)
N7: (43.455,102.820,100.242)
N9: (41.426,102.406,99.379)
O5': (38.143,105.719,101.149)
O3': (37.491,101.374,101.607)
OP2: (36.682,107.744,101.390)
C3': (38.705,101.970,101.154)
C1': (39.973,102.437,99.208)
C5': (38.416,104.434,101.736)
O4': (39.489,103.651,99.739)
C8: (42.167,102.987,100.378)
O2': (38.151,100.903,99.024)
C6: (44.688,101.553,98.404)
C5: (43.574,102.070,99.083)
C4: (42.333,101.800,98.545)
P: (37.742,106.957,102.067)
C4': (38.424,103.376,100.674)
C2': (39.203,101.296,99.881)
C2: (43.202,100.649,96.881)
N1: (44.463,100.829,97.281)
N3: (42.075,101.090,97.435)
N6: (45.943,101.735,98.808)
N7: (43.455,102.820,100.242)
N9: (41.426,102.406,99.379)
O5': (38.143,105.719,101.149)
O3': (37.491,101.374,101.607)
Image (generated by PyMOL):