Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:01039:01040
Extra
PDB:
ATOM 1 O3' A A1038 34.594 111.101 106.235 1.00 39.04 O
ATOM 2 P C A1039 34.369 110.004 105.085 1.00 39.53 P
ATOM 3 OP1 C A1039 34.279 110.752 103.818 1.00 35.89 O
ATOM 4 OP2 C A1039 33.266 109.073 105.471 1.00 41.06 O
ATOM 5 O5' C A1039 35.696 109.133 105.120 1.00 41.49 O
ATOM 6 C5' C A1039 36.815 109.415 104.282 1.00 44.32 C
ATOM 7 C4' C A1039 37.900 108.415 104.570 1.00 48.96 C
ATOM 8 O4' C A1039 38.239 108.526 105.984 1.00 50.60 O
ATOM 9 C3' C A1039 37.468 106.959 104.457 1.00 52.18 C
ATOM 10 O3' C A1039 37.449 106.337 103.170 1.00 54.91 O
ATOM 11 C2' C A1039 38.516 106.286 105.324 1.00 54.11 C
ATOM 12 O2' C A1039 39.795 106.255 104.711 1.00 54.51 O
ATOM 13 C1' C A1039 38.554 107.242 106.507 1.00 52.61 C
ATOM 14 N1 C A1039 37.544 106.861 107.522 1.00 53.65 N
ATOM 15 C2 C A1039 37.930 106.019 108.586 1.00 54.60 C
ATOM 16 O2 C A1039 39.100 105.604 108.640 1.00 56.70 O
ATOM 17 N3 C A1039 37.015 105.679 109.525 1.00 53.39 N
ATOM 18 C4 C A1039 35.766 106.139 109.437 1.00 52.04 C
ATOM 19 N4 C A1039 34.905 105.798 110.399 1.00 50.96 N
ATOM 20 C5 C A1039 35.343 106.975 108.363 1.00 52.96 C
ATOM 21 C6 C A1039 36.255 107.309 107.438 1.00 52.69 C
ATOM 22 P A A1040 38.106 107.050 101.890 1.00 56.54 P
ATOM 23 OP1 A A1040 39.364 107.734 102.298 1.00 56.83 O
ATOM 24 OP2 A A1040 37.052 107.813 101.168 1.00 55.98 O
ATOM 25 O5' A A1040 38.530 105.801 100.995 1.00 50.64 O
TER
ATOM 1 O3' C B1039 37.449 106.337 103.170 1.00 54.91 O
ATOM 2 P A B1040 38.106 107.050 101.890 1.00 56.54 P
ATOM 3 OP1 A B1040 39.364 107.734 102.298 1.00 56.83 O
ATOM 4 OP2 A B1040 37.052 107.813 101.168 1.00 55.98 O
ATOM 5 O5' A B1040 38.530 105.801 100.995 1.00 50.64 O
ATOM 6 C5' A B1040 38.748 104.512 101.593 1.00 39.19 C
ATOM 7 C4' A B1040 38.714 103.445 100.539 1.00 36.90 C
ATOM 8 O4' A B1040 39.740 103.716 99.561 1.00 34.69 O
ATOM 9 C3' A B1040 39.010 102.040 101.024 1.00 37.85 C
ATOM 10 O3' A B1040 37.810 101.440 101.500 1.00 40.11 O
ATOM 11 C2' A B1040 39.498 101.358 99.752 1.00 37.25 C
ATOM 12 O2' A B1040 38.441 100.980 98.898 1.00 39.40 O
ATOM 13 C1' A B1040 40.258 102.497 99.068 1.00 35.31 C
ATOM 14 N9 A B1040 41.713 102.494 99.248 1.00 33.61 N
ATOM 15 C8 A B1040 42.459 103.079 100.242 1.00 31.01 C
ATOM 16 N7 A B1040 43.749 102.925 100.091 1.00 31.88 N
ATOM 17 C5 A B1040 43.864 102.178 98.924 1.00 32.38 C
ATOM 18 C6 A B1040 44.979 101.666 98.216 1.00 32.81 C
ATOM 19 N6 A B1040 46.249 101.826 98.599 1.00 29.46 N
ATOM 20 N1 A B1040 44.736 100.963 97.088 1.00 33.02 N
ATOM 21 C2 A B1040 43.472 100.777 96.711 1.00 30.39 C
ATOM 22 N3 A B1040 42.354 101.195 97.288 1.00 31.75 N
ATOM 23 C4 A B1040 42.619 101.899 98.401 1.00 31.67 C
ATOM 24 P A B1041 37.633 101.106 103.063 1.00 39.55 P
ATOM 25 OP1 A B1041 36.205 101.384 103.362 1.00 40.11 O
ATOM 26 OP2 A B1041 38.695 101.761 103.870 1.00 41.24 O
ATOM 27 O5' A B1041 37.859 99.535 103.136 1.00 38.90 O
TER
ATOM 2 P C A1039 34.369 110.004 105.085 1.00 39.53 P
ATOM 3 OP1 C A1039 34.279 110.752 103.818 1.00 35.89 O
ATOM 4 OP2 C A1039 33.266 109.073 105.471 1.00 41.06 O
ATOM 5 O5' C A1039 35.696 109.133 105.120 1.00 41.49 O
ATOM 6 C5' C A1039 36.815 109.415 104.282 1.00 44.32 C
ATOM 7 C4' C A1039 37.900 108.415 104.570 1.00 48.96 C
ATOM 8 O4' C A1039 38.239 108.526 105.984 1.00 50.60 O
ATOM 9 C3' C A1039 37.468 106.959 104.457 1.00 52.18 C
ATOM 10 O3' C A1039 37.449 106.337 103.170 1.00 54.91 O
ATOM 11 C2' C A1039 38.516 106.286 105.324 1.00 54.11 C
ATOM 12 O2' C A1039 39.795 106.255 104.711 1.00 54.51 O
ATOM 13 C1' C A1039 38.554 107.242 106.507 1.00 52.61 C
ATOM 14 N1 C A1039 37.544 106.861 107.522 1.00 53.65 N
ATOM 15 C2 C A1039 37.930 106.019 108.586 1.00 54.60 C
ATOM 16 O2 C A1039 39.100 105.604 108.640 1.00 56.70 O
ATOM 17 N3 C A1039 37.015 105.679 109.525 1.00 53.39 N
ATOM 18 C4 C A1039 35.766 106.139 109.437 1.00 52.04 C
ATOM 19 N4 C A1039 34.905 105.798 110.399 1.00 50.96 N
ATOM 20 C5 C A1039 35.343 106.975 108.363 1.00 52.96 C
ATOM 21 C6 C A1039 36.255 107.309 107.438 1.00 52.69 C
ATOM 22 P A A1040 38.106 107.050 101.890 1.00 56.54 P
ATOM 23 OP1 A A1040 39.364 107.734 102.298 1.00 56.83 O
ATOM 24 OP2 A A1040 37.052 107.813 101.168 1.00 55.98 O
ATOM 25 O5' A A1040 38.530 105.801 100.995 1.00 50.64 O
TER
ATOM 1 O3' C B1039 37.449 106.337 103.170 1.00 54.91 O
ATOM 2 P A B1040 38.106 107.050 101.890 1.00 56.54 P
ATOM 3 OP1 A B1040 39.364 107.734 102.298 1.00 56.83 O
ATOM 4 OP2 A B1040 37.052 107.813 101.168 1.00 55.98 O
ATOM 5 O5' A B1040 38.530 105.801 100.995 1.00 50.64 O
ATOM 6 C5' A B1040 38.748 104.512 101.593 1.00 39.19 C
ATOM 7 C4' A B1040 38.714 103.445 100.539 1.00 36.90 C
ATOM 8 O4' A B1040 39.740 103.716 99.561 1.00 34.69 O
ATOM 9 C3' A B1040 39.010 102.040 101.024 1.00 37.85 C
ATOM 10 O3' A B1040 37.810 101.440 101.500 1.00 40.11 O
ATOM 11 C2' A B1040 39.498 101.358 99.752 1.00 37.25 C
ATOM 12 O2' A B1040 38.441 100.980 98.898 1.00 39.40 O
ATOM 13 C1' A B1040 40.258 102.497 99.068 1.00 35.31 C
ATOM 14 N9 A B1040 41.713 102.494 99.248 1.00 33.61 N
ATOM 15 C8 A B1040 42.459 103.079 100.242 1.00 31.01 C
ATOM 16 N7 A B1040 43.749 102.925 100.091 1.00 31.88 N
ATOM 17 C5 A B1040 43.864 102.178 98.924 1.00 32.38 C
ATOM 18 C6 A B1040 44.979 101.666 98.216 1.00 32.81 C
ATOM 19 N6 A B1040 46.249 101.826 98.599 1.00 29.46 N
ATOM 20 N1 A B1040 44.736 100.963 97.088 1.00 33.02 N
ATOM 21 C2 A B1040 43.472 100.777 96.711 1.00 30.39 C
ATOM 22 N3 A B1040 42.354 101.195 97.288 1.00 31.75 N
ATOM 23 C4 A B1040 42.619 101.899 98.401 1.00 31.67 C
ATOM 24 P A B1041 37.633 101.106 103.063 1.00 39.55 P
ATOM 25 OP1 A B1041 36.205 101.384 103.362 1.00 40.11 O
ATOM 26 OP2 A B1041 38.695 101.761 103.870 1.00 41.24 O
ATOM 27 O5' A B1041 37.859 99.535 103.136 1.00 38.90 O
TER
Atoms:
C2: (37.930,106.019,108.586)
OP1: (34.279,110.752,103.818)
OP2: (33.266,109.073,105.471)
C4: (35.766,106.139,109.437)
O5': (35.696,109.133,105.120)
C3': (37.468,106.959,104.457)
C1': (38.554,107.242,106.507)
O4': (38.239,108.526,105.984)
C5': (36.815,109.415,104.282)
P: (34.369,110.004,105.085)
O2: (39.100,105.604,108.640)
C4': (37.900,108.415,104.570)
C2': (38.516,106.286,105.324)
O2': (39.795,106.255,104.711)
N1: (37.544,106.861,107.522)
N3: (37.015,105.679,109.525)
N4: (34.905,105.798,110.399)
C6: (36.255,107.309,107.438)
C5: (35.343,106.975,108.363)
O3': (37.449,106.337,103.170)
OP1: (34.279,110.752,103.818)
OP2: (33.266,109.073,105.471)
C4: (35.766,106.139,109.437)
O5': (35.696,109.133,105.120)
C3': (37.468,106.959,104.457)
C1': (38.554,107.242,106.507)
O4': (38.239,108.526,105.984)
C5': (36.815,109.415,104.282)
P: (34.369,110.004,105.085)
O2: (39.100,105.604,108.640)
C4': (37.900,108.415,104.570)
C2': (38.516,106.286,105.324)
O2': (39.795,106.255,104.711)
N1: (37.544,106.861,107.522)
N3: (37.015,105.679,109.525)
N4: (34.905,105.798,110.399)
C6: (36.255,107.309,107.438)
C5: (35.343,106.975,108.363)
O3': (37.449,106.337,103.170)
OP1: (39.364,107.734,102.298)
OP2: (37.052,107.813,101.168)
C3': (39.010,102.040,101.024)
C1': (40.258,102.497,99.068)
C5': (38.748,104.512,101.593)
O4': (39.740,103.716,99.561)
C8: (42.459,103.079,100.242)
O2': (38.441,100.980,98.898)
C6: (44.979,101.666,98.216)
C5: (43.864,102.178,98.924)
C4: (42.619,101.899,98.401)
P: (38.106,107.050,101.890)
C4': (38.714,103.445,100.539)
C2': (39.498,101.358,99.752)
C2: (43.472,100.777,96.711)
N1: (44.736,100.963,97.088)
N3: (42.354,101.195,97.288)
N6: (46.249,101.826,98.599)
N7: (43.749,102.925,100.091)
N9: (41.713,102.494,99.248)
O5': (38.530,105.801,100.995)
O3': (37.810,101.440,101.500)
OP2: (37.052,107.813,101.168)
C3': (39.010,102.040,101.024)
C1': (40.258,102.497,99.068)
C5': (38.748,104.512,101.593)
O4': (39.740,103.716,99.561)
C8: (42.459,103.079,100.242)
O2': (38.441,100.980,98.898)
C6: (44.979,101.666,98.216)
C5: (43.864,102.178,98.924)
C4: (42.619,101.899,98.401)
P: (38.106,107.050,101.890)
C4': (38.714,103.445,100.539)
C2': (39.498,101.358,99.752)
C2: (43.472,100.777,96.711)
N1: (44.736,100.963,97.088)
N3: (42.354,101.195,97.288)
N6: (46.249,101.826,98.599)
N7: (43.749,102.925,100.091)
N9: (41.713,102.494,99.248)
O5': (38.530,105.801,100.995)
O3': (37.810,101.440,101.500)
Image (generated by PyMOL):