Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01039:01040
Extra
PDB:
ATOM 1 O3' A A1038 34.581 111.283 106.257 1.00 34.32 O
ATOM 2 P C A1039 34.330 110.180 105.115 1.00 33.94 P
ATOM 3 OP1 C A1039 34.210 110.924 103.847 1.00 29.05 O
ATOM 4 OP2 C A1039 33.242 109.247 105.530 1.00 36.17 O
ATOM 5 O5' C A1039 35.653 109.305 105.123 1.00 35.64 O
ATOM 6 C5' C A1039 36.779 109.631 104.320 1.00 39.59 C
ATOM 7 C4' C A1039 37.867 108.632 104.588 1.00 43.82 C
ATOM 8 O4' C A1039 38.238 108.742 105.991 1.00 44.94 O
ATOM 9 C3' C A1039 37.438 107.172 104.481 1.00 46.11 C
ATOM 10 O3' C A1039 37.390 106.559 103.193 1.00 48.48 O
ATOM 11 C2' C A1039 38.522 106.510 105.309 1.00 48.12 C
ATOM 12 O2' C A1039 39.782 106.521 104.654 1.00 47.54 O
ATOM 13 C1' C A1039 38.572 107.457 106.501 1.00 46.50 C
ATOM 14 N1 C A1039 37.566 107.052 107.507 1.00 47.37 N
ATOM 15 C2 C A1039 37.949 106.159 108.527 1.00 48.88 C
ATOM 16 O2 C A1039 39.115 105.734 108.552 1.00 51.41 O
ATOM 17 N3 C A1039 37.036 105.784 109.455 1.00 47.65 N
ATOM 18 C4 C A1039 35.791 106.260 109.396 1.00 46.05 C
ATOM 19 N4 C A1039 34.932 105.878 110.341 1.00 44.87 N
ATOM 20 C5 C A1039 35.373 107.156 108.369 1.00 46.94 C
ATOM 21 C6 C A1039 36.283 107.523 107.455 1.00 46.20 C
ATOM 22 P A A1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 23 OP1 A A1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 24 OP2 A A1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 25 O5' A A1040 38.475 106.014 101.022 1.00 44.26 O
TER
ATOM 1 O3' C B1039 37.390 106.559 103.193 1.00 48.48 O
ATOM 2 P A B1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 3 OP1 A B1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 4 OP2 A B1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 5 O5' A B1040 38.475 106.014 101.022 1.00 44.26 O
ATOM 6 C5' A B1040 38.730 104.738 101.624 1.00 34.17 C
ATOM 7 C4' A B1040 38.703 103.669 100.573 1.00 33.36 C
ATOM 8 O4' A B1040 39.742 103.935 99.607 1.00 31.89 O
ATOM 9 C3' A B1040 38.986 102.264 101.058 1.00 34.25 C
ATOM 10 O3' A B1040 37.775 101.679 101.529 1.00 36.23 O
ATOM 11 C2' A B1040 39.473 101.583 99.783 1.00 34.55 C
ATOM 12 O2' A B1040 38.409 101.233 98.924 1.00 36.34 O
ATOM 13 C1' A B1040 40.251 102.715 99.110 1.00 31.59 C
ATOM 14 N9 A B1040 41.708 102.707 99.284 1.00 29.29 N
ATOM 15 C8 A B1040 42.452 103.284 100.285 1.00 27.84 C
ATOM 16 N7 A B1040 43.743 103.131 100.138 1.00 26.97 N
ATOM 17 C5 A B1040 43.862 102.397 98.966 1.00 27.79 C
ATOM 18 C6 A B1040 44.983 101.899 98.260 1.00 28.78 C
ATOM 19 N6 A B1040 46.249 102.082 98.643 1.00 25.60 N
ATOM 20 N1 A B1040 44.749 101.195 97.128 1.00 28.87 N
ATOM 21 C2 A B1040 43.482 101.012 96.740 1.00 26.25 C
ATOM 22 N3 A B1040 42.359 101.428 97.313 1.00 26.04 N
ATOM 23 C4 A B1040 42.618 102.122 98.434 1.00 26.75 C
ATOM 24 P A B1041 37.608 101.297 103.082 1.00 34.55 P
ATOM 25 OP1 A B1041 36.184 101.556 103.408 1.00 36.10 O
ATOM 26 OP2 A B1041 38.671 101.935 103.897 1.00 36.75 O
ATOM 27 O5' A B1041 37.861 99.728 103.116 1.00 34.75 O
TER
ATOM 2 P C A1039 34.330 110.180 105.115 1.00 33.94 P
ATOM 3 OP1 C A1039 34.210 110.924 103.847 1.00 29.05 O
ATOM 4 OP2 C A1039 33.242 109.247 105.530 1.00 36.17 O
ATOM 5 O5' C A1039 35.653 109.305 105.123 1.00 35.64 O
ATOM 6 C5' C A1039 36.779 109.631 104.320 1.00 39.59 C
ATOM 7 C4' C A1039 37.867 108.632 104.588 1.00 43.82 C
ATOM 8 O4' C A1039 38.238 108.742 105.991 1.00 44.94 O
ATOM 9 C3' C A1039 37.438 107.172 104.481 1.00 46.11 C
ATOM 10 O3' C A1039 37.390 106.559 103.193 1.00 48.48 O
ATOM 11 C2' C A1039 38.522 106.510 105.309 1.00 48.12 C
ATOM 12 O2' C A1039 39.782 106.521 104.654 1.00 47.54 O
ATOM 13 C1' C A1039 38.572 107.457 106.501 1.00 46.50 C
ATOM 14 N1 C A1039 37.566 107.052 107.507 1.00 47.37 N
ATOM 15 C2 C A1039 37.949 106.159 108.527 1.00 48.88 C
ATOM 16 O2 C A1039 39.115 105.734 108.552 1.00 51.41 O
ATOM 17 N3 C A1039 37.036 105.784 109.455 1.00 47.65 N
ATOM 18 C4 C A1039 35.791 106.260 109.396 1.00 46.05 C
ATOM 19 N4 C A1039 34.932 105.878 110.341 1.00 44.87 N
ATOM 20 C5 C A1039 35.373 107.156 108.369 1.00 46.94 C
ATOM 21 C6 C A1039 36.283 107.523 107.455 1.00 46.20 C
ATOM 22 P A A1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 23 OP1 A A1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 24 OP2 A A1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 25 O5' A A1040 38.475 106.014 101.022 1.00 44.26 O
TER
ATOM 1 O3' C B1039 37.390 106.559 103.193 1.00 48.48 O
ATOM 2 P A B1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 3 OP1 A B1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 4 OP2 A B1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 5 O5' A B1040 38.475 106.014 101.022 1.00 44.26 O
ATOM 6 C5' A B1040 38.730 104.738 101.624 1.00 34.17 C
ATOM 7 C4' A B1040 38.703 103.669 100.573 1.00 33.36 C
ATOM 8 O4' A B1040 39.742 103.935 99.607 1.00 31.89 O
ATOM 9 C3' A B1040 38.986 102.264 101.058 1.00 34.25 C
ATOM 10 O3' A B1040 37.775 101.679 101.529 1.00 36.23 O
ATOM 11 C2' A B1040 39.473 101.583 99.783 1.00 34.55 C
ATOM 12 O2' A B1040 38.409 101.233 98.924 1.00 36.34 O
ATOM 13 C1' A B1040 40.251 102.715 99.110 1.00 31.59 C
ATOM 14 N9 A B1040 41.708 102.707 99.284 1.00 29.29 N
ATOM 15 C8 A B1040 42.452 103.284 100.285 1.00 27.84 C
ATOM 16 N7 A B1040 43.743 103.131 100.138 1.00 26.97 N
ATOM 17 C5 A B1040 43.862 102.397 98.966 1.00 27.79 C
ATOM 18 C6 A B1040 44.983 101.899 98.260 1.00 28.78 C
ATOM 19 N6 A B1040 46.249 102.082 98.643 1.00 25.60 N
ATOM 20 N1 A B1040 44.749 101.195 97.128 1.00 28.87 N
ATOM 21 C2 A B1040 43.482 101.012 96.740 1.00 26.25 C
ATOM 22 N3 A B1040 42.359 101.428 97.313 1.00 26.04 N
ATOM 23 C4 A B1040 42.618 102.122 98.434 1.00 26.75 C
ATOM 24 P A B1041 37.608 101.297 103.082 1.00 34.55 P
ATOM 25 OP1 A B1041 36.184 101.556 103.408 1.00 36.10 O
ATOM 26 OP2 A B1041 38.671 101.935 103.897 1.00 36.75 O
ATOM 27 O5' A B1041 37.861 99.728 103.116 1.00 34.75 O
TER
Atoms:
C2: (37.949,106.159,108.527)
OP1: (34.210,110.924,103.847)
OP2: (33.242,109.247,105.530)
C4: (35.791,106.260,109.396)
O5': (35.653,109.305,105.123)
C3': (37.438,107.172,104.481)
C1': (38.572,107.457,106.501)
O4': (38.238,108.742,105.991)
C5': (36.779,109.631,104.320)
P: (34.330,110.180,105.115)
O2: (39.115,105.734,108.552)
C4': (37.867,108.632,104.588)
C2': (38.522,106.510,105.309)
O2': (39.782,106.521,104.654)
N1: (37.566,107.052,107.507)
N3: (37.036,105.784,109.455)
N4: (34.932,105.878,110.341)
C6: (36.283,107.523,107.455)
C5: (35.373,107.156,108.369)
O3': (37.390,106.559,103.193)
OP1: (34.210,110.924,103.847)
OP2: (33.242,109.247,105.530)
C4: (35.791,106.260,109.396)
O5': (35.653,109.305,105.123)
C3': (37.438,107.172,104.481)
C1': (38.572,107.457,106.501)
O4': (38.238,108.742,105.991)
C5': (36.779,109.631,104.320)
P: (34.330,110.180,105.115)
O2: (39.115,105.734,108.552)
C4': (37.867,108.632,104.588)
C2': (38.522,106.510,105.309)
O2': (39.782,106.521,104.654)
N1: (37.566,107.052,107.507)
N3: (37.036,105.784,109.455)
N4: (34.932,105.878,110.341)
C6: (36.283,107.523,107.455)
C5: (35.373,107.156,108.369)
O3': (37.390,106.559,103.193)
OP1: (39.313,107.945,102.326)
OP2: (37.003,108.030,101.194)
C3': (38.986,102.264,101.058)
C1': (40.251,102.715,99.110)
C5': (38.730,104.738,101.624)
O4': (39.742,103.935,99.607)
C8: (42.452,103.284,100.285)
O2': (38.409,101.233,98.924)
C6: (44.983,101.899,98.260)
C5: (43.862,102.397,98.966)
C4: (42.618,102.122,98.434)
P: (38.053,107.264,101.913)
C4': (38.703,103.669,100.573)
C2': (39.473,101.583,99.783)
C2: (43.482,101.012,96.740)
N1: (44.749,101.195,97.128)
N3: (42.359,101.428,97.313)
N6: (46.249,102.082,98.643)
N7: (43.743,103.131,100.138)
N9: (41.708,102.707,99.284)
O5': (38.475,106.014,101.022)
O3': (37.775,101.679,101.529)
OP2: (37.003,108.030,101.194)
C3': (38.986,102.264,101.058)
C1': (40.251,102.715,99.110)
C5': (38.730,104.738,101.624)
O4': (39.742,103.935,99.607)
C8: (42.452,103.284,100.285)
O2': (38.409,101.233,98.924)
C6: (44.983,101.899,98.260)
C5: (43.862,102.397,98.966)
C4: (42.618,102.122,98.434)
P: (38.053,107.264,101.913)
C4': (38.703,103.669,100.573)
C2': (39.473,101.583,99.783)
C2: (43.482,101.012,96.740)
N1: (44.749,101.195,97.128)
N3: (42.359,101.428,97.313)
N6: (46.249,102.082,98.643)
N7: (43.743,103.131,100.138)
N9: (41.708,102.707,99.284)
O5': (38.475,106.014,101.022)
O3': (37.775,101.679,101.529)
Image (generated by PyMOL):