ClaRNA

Doublet info:

Details

Nucleotide types: CA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIT:01039:01040

Extra

PDB:
ATOM 1 O3' A A1038 34.622 111.103 106.207 1.00 32.30 O
ATOM 2 P C A1039 34.490 110.008 105.045 1.00 31.97 P
ATOM 3 OP1 C A1039 34.425 110.761 103.771 1.00 30.66 O
ATOM 4 OP2 C A1039 33.411 109.045 105.388 1.00 33.62 O
ATOM 5 O5' C A1039 35.851 109.197 105.133 1.00 35.62 O
ATOM 6 C5' C A1039 36.911 109.383 104.195 1.00 38.01 C
ATOM 7 C4' C A1039 37.999 108.389 104.488 1.00 42.51 C
ATOM 8 O4' C A1039 38.369 108.542 105.891 1.00 44.78 O
ATOM 9 C3' C A1039 37.572 106.928 104.427 1.00 44.86 C
ATOM 10 O3' C A1039 37.545 106.278 103.157 1.00 47.30 O
ATOM 11 C2' C A1039 38.652 106.290 105.282 1.00 47.81 C
ATOM 12 O2' C A1039 39.920 106.272 104.644 1.00 48.31 O
ATOM 13 C1' C A1039 38.697 107.272 106.443 1.00 46.84 C
ATOM 14 N1 C A1039 37.685 106.886 107.454 1.00 47.92 N
ATOM 15 C2 C A1039 38.074 106.032 108.498 1.00 48.93 C
ATOM 16 O2 C A1039 39.248 105.631 108.542 1.00 51.42 O
ATOM 17 N3 C A1039 37.162 105.666 109.430 1.00 47.90 N
ATOM 18 C4 C A1039 35.911 106.119 109.354 1.00 46.25 C
ATOM 19 N4 C A1039 35.056 105.751 110.310 1.00 44.96 N
ATOM 20 C5 C A1039 35.483 106.977 108.299 1.00 46.61 C
ATOM 21 C6 C A1039 36.393 107.334 107.381 1.00 47.12 C
ATOM 22 P A A1040 38.181 106.970 101.858 1.00 49.01 P
ATOM 23 OP1 A A1040 39.470 107.616 102.230 1.00 50.42 O
ATOM 24 OP2 A A1040 37.120 107.764 101.182 1.00 49.54 O
ATOM 25 O5' A A1040 38.552 105.723 100.946 1.00 42.63 O
TER

ATOM 1 O3' C B1039 37.545 106.278 103.157 1.00 47.30 O
ATOM 2 P A B1040 38.181 106.970 101.858 1.00 49.01 P
ATOM 3 OP1 A B1040 39.470 107.616 102.230 1.00 50.42 O
ATOM 4 OP2 A B1040 37.120 107.764 101.182 1.00 49.54 O
ATOM 5 O5' A B1040 38.552 105.723 100.946 1.00 42.63 O
ATOM 6 C5' A B1040 38.806 104.446 101.531 1.00 34.34 C
ATOM 7 C4' A B1040 38.757 103.391 100.473 1.00 33.32 C
ATOM 8 O4' A B1040 39.772 103.674 99.487 1.00 33.13 O
ATOM 9 C3' A B1040 39.056 101.985 100.943 1.00 34.02 C
ATOM 10 O3' A B1040 37.861 101.394 101.434 1.00 35.42 O
ATOM 11 C2' A B1040 39.529 101.318 99.658 1.00 34.22 C
ATOM 12 O2' A B1040 38.448 100.955 98.818 1.00 33.49 O
ATOM 13 C1' A B1040 40.302 102.461 98.991 1.00 32.74 C
ATOM 14 N9 A B1040 41.752 102.474 99.208 1.00 31.48 N
ATOM 15 C8 A B1040 42.444 103.068 100.233 1.00 30.82 C
ATOM 16 N7 A B1040 43.741 102.927 100.144 1.00 31.62 N
ATOM 17 C5 A B1040 43.918 102.184 98.984 1.00 32.25 C
ATOM 18 C6 A B1040 45.071 101.687 98.337 1.00 34.00 C
ATOM 19 N6 A B1040 46.318 101.868 98.786 1.00 33.06 N
ATOM 20 N1 A B1040 44.894 100.980 97.199 1.00 33.67 N
ATOM 21 C2 A B1040 43.653 100.786 96.755 1.00 31.26 C
ATOM 22 N3 A B1040 42.501 101.194 97.273 1.00 32.02 N
ATOM 23 C4 A B1040 42.703 101.897 98.400 1.00 31.10 C
ATOM 24 P A B1041 37.677 101.121 103.007 1.00 36.31 P
ATOM 25 OP1 A B1041 36.248 101.422 103.303 1.00 35.75 O
ATOM 26 OP2 A B1041 38.743 101.801 103.791 1.00 36.88 O
ATOM 27 O5' A B1041 37.899 99.552 103.121 1.00 33.98 O
TER

Atoms:
C2: (38.074,106.032,108.498)
OP1: (34.425,110.761,103.771)
OP2: (33.411,109.045,105.388)
C4: (35.911,106.119,109.354)
O5': (35.851,109.197,105.133)
C3': (37.572,106.928,104.427)
C1': (38.697,107.272,106.443)
O4': (38.369,108.542,105.891)
C5': (36.911,109.383,104.195)
P: (34.490,110.008,105.045)
O2: (39.248,105.631,108.542)
C4': (37.999,108.389,104.488)
C2': (38.652,106.290,105.282)
O2': (39.920,106.272,104.644)
N1: (37.685,106.886,107.454)
N3: (37.162,105.666,109.430)
N4: (35.056,105.751,110.310)
C6: (36.393,107.334,107.381)
C5: (35.483,106.977,108.299)
O3': (37.545,106.278,103.157)
OP1: (39.470,107.616,102.230)
OP2: (37.120,107.764,101.182)
C3': (39.056,101.985,100.943)
C1': (40.302,102.461,98.991)
C5': (38.806,104.446,101.531)
O4': (39.772,103.674,99.487)
C8: (42.444,103.068,100.233)
O2': (38.448,100.955,98.818)
C6: (45.071,101.687,98.337)
C5: (43.918,102.184,98.984)
C4: (42.703,101.897,98.400)
P: (38.181,106.970,101.858)
C4': (38.757,103.391,100.473)
C2': (39.529,101.318,99.658)
C2: (43.653,100.786,96.755)
N1: (44.894,100.980,97.199)
N3: (42.501,101.194,97.273)
N6: (46.318,101.868,98.786)
N7: (43.741,102.927,100.144)
N9: (41.752,102.474,99.208)
O5': (38.552,105.723,100.946)
O3': (37.861,101.394,101.434)
Image (generated by PyMOL):
PyMOL image
show in jmol