ClaRNA

Doublet info:

Details

Nucleotide types: CA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:01039:01040

Extra

PDB:
ATOM 1 O3' A A1038 34.639 111.425 106.530 1.00 44.86 O
ATOM 2 P C A1039 34.529 110.316 105.371 1.00 46.48 P
ATOM 3 OP1 C A1039 34.518 111.069 104.096 1.00 44.81 O
ATOM 4 OP2 C A1039 33.441 109.340 105.662 1.00 46.54 O
ATOM 5 O5' C A1039 35.896 109.514 105.479 1.00 50.01 O
ATOM 6 C5' C A1039 36.951 109.699 104.532 1.00 51.68 C
ATOM 7 C4' C A1039 38.042 108.709 104.812 1.00 54.60 C
ATOM 8 O4' C A1039 38.445 108.878 106.199 1.00 56.46 O
ATOM 9 C3' C A1039 37.633 107.241 104.775 1.00 56.57 C
ATOM 10 O3' C A1039 37.573 106.584 103.510 1.00 57.95 O
ATOM 11 C2' C A1039 38.759 106.633 105.594 1.00 58.69 C
ATOM 12 O2' C A1039 40.006 106.668 104.916 1.00 59.61 O
ATOM 13 C1' C A1039 38.815 107.619 106.751 1.00 57.43 C
ATOM 14 N1 C A1039 37.827 107.219 107.778 1.00 57.91 N
ATOM 15 C2 C A1039 38.250 106.396 108.835 1.00 58.51 C
ATOM 16 O2 C A1039 39.444 106.043 108.886 1.00 58.91 O
ATOM 17 N3 C A1039 37.346 106.007 109.770 1.00 57.44 N
ATOM 18 C4 C A1039 36.075 106.410 109.680 1.00 56.99 C
ATOM 19 N4 C A1039 35.220 106.015 110.629 1.00 56.49 N
ATOM 20 C5 C A1039 35.623 107.242 108.618 1.00 57.72 C
ATOM 21 C6 C A1039 36.521 107.622 107.700 1.00 57.65 C
ATOM 22 P A A1040 38.106 107.305 102.180 1.00 59.59 P
ATOM 23 OP1 A A1040 39.324 108.096 102.517 1.00 60.13 O
ATOM 24 OP2 A A1040 36.966 107.961 101.482 1.00 58.87 O
ATOM 25 O5' A A1040 38.593 106.079 101.294 1.00 55.49 O
TER

ATOM 1 O3' C B1039 37.573 106.584 103.510 1.00 57.95 O
ATOM 2 P A B1040 38.106 107.305 102.180 1.00 59.59 P
ATOM 3 OP1 A B1040 39.324 108.096 102.517 1.00 60.13 O
ATOM 4 OP2 A B1040 36.966 107.961 101.482 1.00 58.87 O
ATOM 5 O5' A B1040 38.593 106.079 101.294 1.00 55.49 O
ATOM 6 C5' A B1040 38.868 104.805 101.887 1.00 48.92 C
ATOM 7 C4' A B1040 38.835 103.745 100.830 1.00 47.35 C
ATOM 8 O4' A B1040 39.843 104.030 99.832 1.00 46.90 O
ATOM 9 C3' A B1040 39.145 102.340 101.294 1.00 46.68 C
ATOM 10 O3' A B1040 37.960 101.760 101.825 1.00 44.71 O
ATOM 11 C2' A B1040 39.586 101.675 99.993 1.00 47.93 C
ATOM 12 O2' A B1040 38.497 101.331 99.154 1.00 49.31 O
ATOM 13 C1' A B1040 40.353 102.816 99.314 1.00 45.81 C
ATOM 14 N9 A B1040 41.804 102.808 99.516 1.00 43.03 N
ATOM 15 C8 A B1040 42.513 103.422 100.514 1.00 41.14 C
ATOM 16 N7 A B1040 43.809 103.267 100.411 1.00 42.05 N
ATOM 17 C5 A B1040 43.966 102.487 99.274 1.00 41.45 C
ATOM 18 C6 A B1040 45.112 101.963 98.621 1.00 40.93 C
ATOM 19 N6 A B1040 46.362 102.137 99.049 1.00 38.67 N
ATOM 20 N1 A B1040 44.917 101.233 97.502 1.00 41.34 N
ATOM 21 C2 A B1040 43.664 101.031 97.083 1.00 41.40 C
ATOM 22 N3 A B1040 42.516 101.458 97.612 1.00 42.30 N
ATOM 23 C4 A B1040 42.739 102.191 98.717 1.00 42.04 C
ATOM 24 P A B1041 37.845 101.453 103.394 1.00 43.40 P
ATOM 25 OP1 A B1041 36.441 101.735 103.771 1.00 42.75 O
ATOM 26 OP2 A B1041 38.949 102.105 104.145 1.00 43.80 O
ATOM 27 O5' A B1041 38.066 99.883 103.458 1.00 43.10 O
TER

Atoms:
C2: (38.250,106.396,108.835)
OP1: (34.518,111.069,104.096)
OP2: (33.441,109.340,105.662)
C4: (36.075,106.410,109.680)
O5': (35.896,109.514,105.479)
C3': (37.633,107.241,104.775)
C1': (38.815,107.619,106.751)
O4': (38.445,108.878,106.199)
C5': (36.951,109.699,104.532)
P: (34.529,110.316,105.371)
O2: (39.444,106.043,108.886)
C4': (38.042,108.709,104.812)
C2': (38.759,106.633,105.594)
O2': (40.006,106.668,104.916)
N1: (37.827,107.219,107.778)
N3: (37.346,106.007,109.770)
N4: (35.220,106.015,110.629)
C6: (36.521,107.622,107.700)
C5: (35.623,107.242,108.618)
O3': (37.573,106.584,103.510)
OP1: (39.324,108.096,102.517)
OP2: (36.966,107.961,101.482)
C3': (39.145,102.340,101.294)
C1': (40.353,102.816,99.314)
C5': (38.868,104.805,101.887)
O4': (39.843,104.030,99.832)
C8: (42.513,103.422,100.514)
O2': (38.497,101.331,99.154)
C6: (45.112,101.963,98.621)
C5: (43.966,102.487,99.274)
C4: (42.739,102.191,98.717)
P: (38.106,107.305,102.180)
C4': (38.835,103.745,100.830)
C2': (39.586,101.675,99.993)
C2: (43.664,101.031,97.083)
N1: (44.917,101.233,97.502)
N3: (42.516,101.458,97.612)
N6: (46.362,102.137,99.049)
N7: (43.809,103.267,100.411)
N9: (41.804,102.808,99.516)
O5': (38.593,106.079,101.294)
O3': (37.960,101.760,101.825)
Image (generated by PyMOL):
PyMOL image
show in jmol