ClaRNA

Doublet info:

Details

Nucleotide types: CA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:01039:01040

Extra

PDB:
ATOM 1 O3' A A1038 34.727 111.303 106.186 1.00 42.79 O
ATOM 2 P C A1039 34.539 110.201 105.032 1.00 42.75 P
ATOM 3 OP1 C A1039 34.560 110.949 103.752 1.00 42.29 O
ATOM 4 OP2 C A1039 33.385 109.326 105.350 1.00 42.26 O
ATOM 5 O5' C A1039 35.840 109.303 105.145 1.00 43.83 O
ATOM 6 C5' C A1039 36.958 109.499 104.285 1.00 45.96 C
ATOM 7 C4' C A1039 37.985 108.451 104.575 1.00 49.01 C
ATOM 8 O4' C A1039 38.309 108.544 105.991 1.00 50.11 O
ATOM 9 C3' C A1039 37.497 107.013 104.444 1.00 51.46 C
ATOM 10 O3' C A1039 37.469 106.397 103.149 1.00 51.37 O
ATOM 11 C2' C A1039 38.517 106.295 105.315 1.00 54.01 C
ATOM 12 O2' C A1039 39.802 106.217 104.710 1.00 55.74 O
ATOM 13 C1' C A1039 38.593 107.247 106.503 1.00 52.07 C
ATOM 14 N1 C A1039 37.588 106.885 107.526 1.00 51.35 N
ATOM 15 C2 C A1039 38.013 106.215 108.684 1.00 52.07 C
ATOM 16 O2 C A1039 39.221 105.953 108.827 1.00 52.36 O
ATOM 17 N3 C A1039 37.096 105.868 109.618 1.00 51.51 N
ATOM 18 C4 C A1039 35.809 106.165 109.433 1.00 50.52 C
ATOM 19 N4 C A1039 34.942 105.812 110.383 1.00 48.67 N
ATOM 20 C5 C A1039 35.353 106.841 108.268 1.00 50.76 C
ATOM 21 C6 C A1039 36.265 107.182 107.352 1.00 50.75 C
ATOM 22 P A A1040 38.072 107.137 101.857 1.00 52.30 P
ATOM 23 OP1 A A1040 39.296 107.891 102.245 1.00 54.17 O
ATOM 24 OP2 A A1040 36.968 107.834 101.149 1.00 52.63 O
ATOM 25 O5' A A1040 38.555 105.922 100.950 1.00 48.10 O
TER

ATOM 1 O3' C B1039 37.469 106.397 103.149 1.00 51.37 O
ATOM 2 P A B1040 38.072 107.137 101.857 1.00 52.30 P
ATOM 3 OP1 A B1040 39.296 107.891 102.245 1.00 54.17 O
ATOM 4 OP2 A B1040 36.968 107.834 101.149 1.00 52.63 O
ATOM 5 O5' A B1040 38.555 105.922 100.950 1.00 48.10 O
ATOM 6 C5' A B1040 38.790 104.635 101.530 1.00 42.56 C
ATOM 7 C4' A B1040 38.738 103.579 100.470 1.00 40.91 C
ATOM 8 O4' A B1040 39.775 103.840 99.501 1.00 40.22 O
ATOM 9 C3' A B1040 39.023 102.173 100.960 1.00 40.73 C
ATOM 10 O3' A B1040 37.828 101.592 101.453 1.00 41.87 O
ATOM 11 C2' A B1040 39.509 101.480 99.697 1.00 40.13 C
ATOM 12 O2' A B1040 38.444 101.086 98.858 1.00 38.94 O
ATOM 13 C1' A B1040 40.283 102.611 99.014 1.00 39.81 C
ATOM 14 N9 A B1040 41.733 102.603 99.217 1.00 38.38 N
ATOM 15 C8 A B1040 42.454 103.194 100.221 1.00 36.81 C
ATOM 16 N7 A B1040 43.747 103.043 100.097 1.00 37.02 N
ATOM 17 C5 A B1040 43.888 102.295 98.938 1.00 37.19 C
ATOM 18 C6 A B1040 45.016 101.805 98.251 1.00 37.56 C
ATOM 19 N6 A B1040 46.275 102.004 98.646 1.00 38.94 N
ATOM 20 N1 A B1040 44.805 101.094 97.126 1.00 37.28 N
ATOM 21 C2 A B1040 43.554 100.894 96.724 1.00 35.92 C
ATOM 22 N3 A B1040 42.420 101.301 97.276 1.00 37.58 N
ATOM 23 C4 A B1040 42.658 102.006 98.393 1.00 37.43 C
ATOM 24 P A B1041 37.657 101.312 103.026 1.00 43.29 P
ATOM 25 OP1 A B1041 36.220 101.557 103.339 1.00 42.10 O
ATOM 26 OP2 A B1041 38.704 102.034 103.794 1.00 42.07 O
ATOM 27 O5' A B1041 37.929 99.749 103.140 1.00 41.16 O
TER

Atoms:
C2: (38.013,106.215,108.684)
OP1: (34.560,110.949,103.752)
OP2: (33.385,109.326,105.350)
C4: (35.809,106.165,109.433)
O5': (35.840,109.303,105.145)
C3': (37.497,107.013,104.444)
C1': (38.593,107.247,106.503)
O4': (38.309,108.544,105.991)
C5': (36.958,109.499,104.285)
P: (34.539,110.201,105.032)
O2: (39.221,105.953,108.827)
C4': (37.985,108.451,104.575)
C2': (38.517,106.295,105.315)
O2': (39.802,106.217,104.710)
N1: (37.588,106.885,107.526)
N3: (37.096,105.868,109.618)
N4: (34.942,105.812,110.383)
C6: (36.265,107.182,107.352)
C5: (35.353,106.841,108.268)
O3': (37.469,106.397,103.149)
OP1: (39.296,107.891,102.245)
OP2: (36.968,107.834,101.149)
C3': (39.023,102.173,100.960)
C1': (40.283,102.611,99.014)
C5': (38.790,104.635,101.530)
O4': (39.775,103.840,99.501)
C8: (42.454,103.194,100.221)
O2': (38.444,101.086,98.858)
C6: (45.016,101.805,98.251)
C5: (43.888,102.295,98.938)
C4: (42.658,102.006,98.393)
P: (38.072,107.137,101.857)
C4': (38.738,103.579,100.470)
C2': (39.509,101.480,99.697)
C2: (43.554,100.894,96.724)
N1: (44.805,101.094,97.126)
N3: (42.420,101.301,97.276)
N6: (46.275,102.004,98.646)
N7: (43.747,103.043,100.097)
N9: (41.733,102.603,99.217)
O5': (38.555,105.922,100.950)
O3': (37.828,101.592,101.453)
Image (generated by PyMOL):
PyMOL image
show in jmol