Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:01039:01040
Extra
PDB:
ATOM 1 O3' A A1038 34.693 111.040 106.143 1.00 33.80 O
ATOM 2 P C A1039 34.351 109.919 105.048 1.00 34.16 P
ATOM 3 OP1 C A1039 34.167 110.660 103.781 1.00 31.86 O
ATOM 4 OP2 C A1039 33.256 109.048 105.561 1.00 33.82 O
ATOM 5 O5' C A1039 35.668 109.031 104.932 1.00 36.59 O
ATOM 6 C5' C A1039 36.925 109.598 104.515 1.00 41.15 C
ATOM 7 C4' C A1039 38.059 108.684 104.918 1.00 44.09 C
ATOM 8 O4' C A1039 38.102 108.581 106.362 1.00 46.56 O
ATOM 9 C3' C A1039 37.911 107.256 104.432 1.00 45.13 C
ATOM 10 O3' C A1039 38.505 107.140 103.154 1.00 46.96 O
ATOM 11 C2' C A1039 38.699 106.462 105.463 1.00 47.71 C
ATOM 12 O2' C A1039 40.091 106.488 105.219 1.00 50.28 O
ATOM 13 C1' C A1039 38.429 107.259 106.739 1.00 47.55 C
ATOM 14 N1 C A1039 37.364 106.746 107.620 1.00 49.09 N
ATOM 15 C2 C A1039 37.718 105.908 108.687 1.00 50.37 C
ATOM 16 O2 C A1039 38.906 105.561 108.817 1.00 52.92 O
ATOM 17 N3 C A1039 36.761 105.500 109.551 1.00 50.07 N
ATOM 18 C4 C A1039 35.500 105.894 109.382 1.00 49.22 C
ATOM 19 N4 C A1039 34.604 105.517 110.294 1.00 48.22 N
ATOM 20 C5 C A1039 35.104 106.706 108.280 1.00 49.18 C
ATOM 21 C6 C A1039 36.058 107.102 107.429 1.00 48.75 C
ATOM 22 P A A1040 37.593 106.853 101.871 1.00 49.04 P
ATOM 23 OP1 A A1040 37.574 108.090 101.045 1.00 49.54 O
ATOM 24 OP2 A A1040 36.309 106.262 102.337 1.00 47.95 O
ATOM 25 O5' A A1040 38.415 105.752 101.068 1.00 45.73 O
TER
ATOM 1 O3' C B1039 38.505 107.140 103.154 1.00 46.96 O
ATOM 2 P A B1040 37.593 106.853 101.871 1.00 49.04 P
ATOM 3 OP1 A B1040 37.574 108.090 101.045 1.00 49.54 O
ATOM 4 OP2 A B1040 36.309 106.262 102.337 1.00 47.95 O
ATOM 5 O5' A B1040 38.415 105.752 101.068 1.00 45.73 O
ATOM 6 C5' A B1040 38.595 104.440 101.605 1.00 41.77 C
ATOM 7 C4' A B1040 38.450 103.412 100.517 1.00 39.91 C
ATOM 8 O4' A B1040 39.421 103.676 99.480 1.00 39.78 O
ATOM 9 C3' A B1040 38.738 101.993 100.969 1.00 40.51 C
ATOM 10 O3' A B1040 37.554 101.419 101.508 1.00 40.65 O
ATOM 11 C2' A B1040 39.192 101.314 99.681 1.00 40.08 C
ATOM 12 O2' A B1040 38.121 100.923 98.843 1.00 39.34 O
ATOM 13 C1' A B1040 39.949 102.453 98.997 1.00 38.93 C
ATOM 14 N9 A B1040 41.398 102.467 99.207 1.00 36.32 N
ATOM 15 C8 A B1040 42.115 103.116 100.182 1.00 34.46 C
ATOM 16 N7 A B1040 43.411 102.983 100.057 1.00 33.95 N
ATOM 17 C5 A B1040 43.558 102.179 98.934 1.00 34.12 C
ATOM 18 C6 A B1040 44.690 101.669 98.269 1.00 33.52 C
ATOM 19 N6 A B1040 45.945 101.893 98.659 1.00 33.13 N
ATOM 20 N1 A B1040 44.483 100.905 97.176 1.00 33.38 N
ATOM 21 C2 A B1040 43.230 100.667 96.790 1.00 31.73 C
ATOM 22 N3 A B1040 42.092 101.082 97.330 1.00 32.77 N
ATOM 23 C4 A B1040 42.327 101.844 98.410 1.00 34.22 C
ATOM 24 P A B1041 37.477 101.052 103.069 1.00 38.87 P
ATOM 25 OP1 A B1041 36.073 101.342 103.462 1.00 38.20 O
ATOM 26 OP2 A B1041 38.594 101.695 103.810 1.00 37.47 O
ATOM 27 O5' A B1041 37.733 99.480 103.092 1.00 37.34 O
TER
ATOM 2 P C A1039 34.351 109.919 105.048 1.00 34.16 P
ATOM 3 OP1 C A1039 34.167 110.660 103.781 1.00 31.86 O
ATOM 4 OP2 C A1039 33.256 109.048 105.561 1.00 33.82 O
ATOM 5 O5' C A1039 35.668 109.031 104.932 1.00 36.59 O
ATOM 6 C5' C A1039 36.925 109.598 104.515 1.00 41.15 C
ATOM 7 C4' C A1039 38.059 108.684 104.918 1.00 44.09 C
ATOM 8 O4' C A1039 38.102 108.581 106.362 1.00 46.56 O
ATOM 9 C3' C A1039 37.911 107.256 104.432 1.00 45.13 C
ATOM 10 O3' C A1039 38.505 107.140 103.154 1.00 46.96 O
ATOM 11 C2' C A1039 38.699 106.462 105.463 1.00 47.71 C
ATOM 12 O2' C A1039 40.091 106.488 105.219 1.00 50.28 O
ATOM 13 C1' C A1039 38.429 107.259 106.739 1.00 47.55 C
ATOM 14 N1 C A1039 37.364 106.746 107.620 1.00 49.09 N
ATOM 15 C2 C A1039 37.718 105.908 108.687 1.00 50.37 C
ATOM 16 O2 C A1039 38.906 105.561 108.817 1.00 52.92 O
ATOM 17 N3 C A1039 36.761 105.500 109.551 1.00 50.07 N
ATOM 18 C4 C A1039 35.500 105.894 109.382 1.00 49.22 C
ATOM 19 N4 C A1039 34.604 105.517 110.294 1.00 48.22 N
ATOM 20 C5 C A1039 35.104 106.706 108.280 1.00 49.18 C
ATOM 21 C6 C A1039 36.058 107.102 107.429 1.00 48.75 C
ATOM 22 P A A1040 37.593 106.853 101.871 1.00 49.04 P
ATOM 23 OP1 A A1040 37.574 108.090 101.045 1.00 49.54 O
ATOM 24 OP2 A A1040 36.309 106.262 102.337 1.00 47.95 O
ATOM 25 O5' A A1040 38.415 105.752 101.068 1.00 45.73 O
TER
ATOM 1 O3' C B1039 38.505 107.140 103.154 1.00 46.96 O
ATOM 2 P A B1040 37.593 106.853 101.871 1.00 49.04 P
ATOM 3 OP1 A B1040 37.574 108.090 101.045 1.00 49.54 O
ATOM 4 OP2 A B1040 36.309 106.262 102.337 1.00 47.95 O
ATOM 5 O5' A B1040 38.415 105.752 101.068 1.00 45.73 O
ATOM 6 C5' A B1040 38.595 104.440 101.605 1.00 41.77 C
ATOM 7 C4' A B1040 38.450 103.412 100.517 1.00 39.91 C
ATOM 8 O4' A B1040 39.421 103.676 99.480 1.00 39.78 O
ATOM 9 C3' A B1040 38.738 101.993 100.969 1.00 40.51 C
ATOM 10 O3' A B1040 37.554 101.419 101.508 1.00 40.65 O
ATOM 11 C2' A B1040 39.192 101.314 99.681 1.00 40.08 C
ATOM 12 O2' A B1040 38.121 100.923 98.843 1.00 39.34 O
ATOM 13 C1' A B1040 39.949 102.453 98.997 1.00 38.93 C
ATOM 14 N9 A B1040 41.398 102.467 99.207 1.00 36.32 N
ATOM 15 C8 A B1040 42.115 103.116 100.182 1.00 34.46 C
ATOM 16 N7 A B1040 43.411 102.983 100.057 1.00 33.95 N
ATOM 17 C5 A B1040 43.558 102.179 98.934 1.00 34.12 C
ATOM 18 C6 A B1040 44.690 101.669 98.269 1.00 33.52 C
ATOM 19 N6 A B1040 45.945 101.893 98.659 1.00 33.13 N
ATOM 20 N1 A B1040 44.483 100.905 97.176 1.00 33.38 N
ATOM 21 C2 A B1040 43.230 100.667 96.790 1.00 31.73 C
ATOM 22 N3 A B1040 42.092 101.082 97.330 1.00 32.77 N
ATOM 23 C4 A B1040 42.327 101.844 98.410 1.00 34.22 C
ATOM 24 P A B1041 37.477 101.052 103.069 1.00 38.87 P
ATOM 25 OP1 A B1041 36.073 101.342 103.462 1.00 38.20 O
ATOM 26 OP2 A B1041 38.594 101.695 103.810 1.00 37.47 O
ATOM 27 O5' A B1041 37.733 99.480 103.092 1.00 37.34 O
TER
Atoms:
C2: (37.718,105.908,108.687)
OP1: (34.167,110.660,103.781)
OP2: (33.256,109.048,105.561)
C4: (35.500,105.894,109.382)
O5': (35.668,109.031,104.932)
C3': (37.911,107.256,104.432)
C1': (38.429,107.259,106.739)
O4': (38.102,108.581,106.362)
C5': (36.925,109.598,104.515)
P: (34.351,109.919,105.048)
O2: (38.906,105.561,108.817)
C4': (38.059,108.684,104.918)
C2': (38.699,106.462,105.463)
O2': (40.091,106.488,105.219)
N1: (37.364,106.746,107.620)
N3: (36.761,105.500,109.551)
N4: (34.604,105.517,110.294)
C6: (36.058,107.102,107.429)
C5: (35.104,106.706,108.280)
O3': (38.505,107.140,103.154)
OP1: (34.167,110.660,103.781)
OP2: (33.256,109.048,105.561)
C4: (35.500,105.894,109.382)
O5': (35.668,109.031,104.932)
C3': (37.911,107.256,104.432)
C1': (38.429,107.259,106.739)
O4': (38.102,108.581,106.362)
C5': (36.925,109.598,104.515)
P: (34.351,109.919,105.048)
O2: (38.906,105.561,108.817)
C4': (38.059,108.684,104.918)
C2': (38.699,106.462,105.463)
O2': (40.091,106.488,105.219)
N1: (37.364,106.746,107.620)
N3: (36.761,105.500,109.551)
N4: (34.604,105.517,110.294)
C6: (36.058,107.102,107.429)
C5: (35.104,106.706,108.280)
O3': (38.505,107.140,103.154)
OP1: (37.574,108.090,101.045)
OP2: (36.309,106.262,102.337)
C3': (38.738,101.993,100.969)
C1': (39.949,102.453,98.997)
C5': (38.595,104.440,101.605)
O4': (39.421,103.676,99.480)
C8: (42.115,103.116,100.182)
O2': (38.121,100.923,98.843)
C6: (44.690,101.669,98.269)
C5: (43.558,102.179,98.934)
C4: (42.327,101.844,98.410)
P: (37.593,106.853,101.871)
C4': (38.450,103.412,100.517)
C2': (39.192,101.314,99.681)
C2: (43.230,100.667,96.790)
N1: (44.483,100.905,97.176)
N3: (42.092,101.082,97.330)
N6: (45.945,101.893,98.659)
N7: (43.411,102.983,100.057)
N9: (41.398,102.467,99.207)
O5': (38.415,105.752,101.068)
O3': (37.554,101.419,101.508)
OP2: (36.309,106.262,102.337)
C3': (38.738,101.993,100.969)
C1': (39.949,102.453,98.997)
C5': (38.595,104.440,101.605)
O4': (39.421,103.676,99.480)
C8: (42.115,103.116,100.182)
O2': (38.121,100.923,98.843)
C6: (44.690,101.669,98.269)
C5: (43.558,102.179,98.934)
C4: (42.327,101.844,98.410)
P: (37.593,106.853,101.871)
C4': (38.450,103.412,100.517)
C2': (39.192,101.314,99.681)
C2: (43.230,100.667,96.790)
N1: (44.483,100.905,97.176)
N3: (42.092,101.082,97.330)
N6: (45.945,101.893,98.659)
N7: (43.411,102.983,100.057)
N9: (41.398,102.467,99.207)
O5': (38.415,105.752,101.068)
O3': (37.554,101.419,101.508)
Image (generated by PyMOL):