Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11488:11974
Extra
PDB:
ATOM 1 O3' G A1487 26.034 -20.668 130.244 1.00 53.91 O
ATOM 2 P G A1488 26.831 -21.617 129.216 1.00 46.80 P
ATOM 3 OP1 G A1488 26.120 -22.931 129.209 1.00 46.89 O
ATOM 4 OP2 G A1488 28.281 -21.577 129.580 1.00 46.92 O
ATOM 5 O5' G A1488 26.634 -20.889 127.818 1.00 46.23 O
ATOM 6 C5' G A1488 27.553 -21.125 126.762 1.00 45.83 C
ATOM 7 C4' G A1488 27.242 -20.298 125.543 1.00 45.34 C
ATOM 8 O4' G A1488 27.293 -18.911 125.886 1.00 45.41 O
ATOM 9 C3' G A1488 28.229 -20.441 124.403 1.00 44.92 C
ATOM 10 O3' G A1488 27.904 -21.474 123.573 1.00 44.68 O
ATOM 11 C2' G A1488 28.172 -19.132 123.696 1.00 44.61 C
ATOM 12 O2' G A1488 27.080 -19.125 122.805 1.00 44.32 O
ATOM 13 C1' G A1488 27.896 -18.178 124.847 1.00 44.99 C
ATOM 14 N9 G A1488 29.130 -17.587 125.377 1.00 45.15 N
ATOM 15 C8 G A1488 29.544 -17.686 126.664 1.00 45.62 C
ATOM 16 N7 G A1488 30.663 -17.083 126.861 1.00 45.67 N
ATOM 17 C5 G A1488 30.976 -16.554 125.636 1.00 45.19 C
ATOM 18 C6 G A1488 32.062 -15.765 125.255 1.00 45.03 C
ATOM 19 O6 G A1488 32.977 -15.383 125.981 1.00 45.29 O
ATOM 20 N1 G A1488 32.019 -15.419 123.922 1.00 44.54 N
ATOM 21 C2 G A1488 31.030 -15.791 123.058 1.00 44.24 C
ATOM 22 N2 G A1488 31.127 -15.371 121.806 1.00 43.80 N
ATOM 23 N3 G A1488 29.998 -16.527 123.402 1.00 44.39 N
ATOM 24 C4 G A1488 30.042 -16.856 124.704 1.00 44.87 C
ATOM 25 P A A1489 28.993 -22.543 123.255 1.00 49.40 P
ATOM 26 OP1 A A1489 28.338 -23.567 122.387 1.00 49.18 O
ATOM 27 OP2 A A1489 29.583 -22.971 124.556 1.00 49.89 O
ATOM 28 O5' A A1489 30.058 -21.709 122.431 1.00 49.05 O
TER
ATOM 1 O3' A B1973 24.366 -19.945 114.881 1.00 45.53 O
ATOM 2 P A B1974 22.973 -19.780 115.672 1.00 45.34 P
ATOM 3 OP1 A B1974 22.141 -20.946 115.261 1.00 45.32 O
ATOM 4 OP2 A B1974 22.467 -18.417 115.411 1.00 45.24 O
ATOM 5 O5' A B1974 23.394 -19.938 117.195 1.00 45.79 O
ATOM 6 C5' A B1974 23.811 -21.210 117.672 1.00 45.99 C
ATOM 7 C4' A B1974 24.495 -21.108 118.992 1.00 46.37 C
ATOM 8 O4' A B1974 25.580 -20.173 118.893 1.00 46.25 O
ATOM 9 C3' A B1974 23.631 -20.610 120.129 1.00 46.75 C
ATOM 10 O3' A B1974 23.022 -21.690 120.783 1.00 47.05 O
ATOM 11 C2' A B1974 24.599 -19.863 121.021 1.00 46.97 C
ATOM 12 O2' A B1974 25.217 -20.767 121.907 1.00 47.29 O
ATOM 13 C1' A B1974 25.657 -19.383 120.041 1.00 46.59 C
ATOM 14 N9 A B1974 25.491 -17.996 119.623 1.00 46.41 N
ATOM 15 C8 A B1974 24.846 -17.650 118.482 1.00 46.05 C
ATOM 16 N7 A B1974 24.901 -16.365 118.251 1.00 45.94 N
ATOM 17 C5 A B1974 25.663 -15.847 119.278 1.00 46.23 C
ATOM 18 C6 A B1974 26.067 -14.540 119.567 1.00 46.29 C
ATOM 19 N6 A B1974 25.759 -13.483 118.847 1.00 46.05 N
ATOM 20 N1 A B1974 26.830 -14.363 120.645 1.00 46.62 N
ATOM 21 C2 A B1974 27.132 -15.460 121.375 1.00 46.87 C
ATOM 22 N3 A B1974 26.818 -16.741 121.210 1.00 46.85 N
ATOM 23 C4 A B1974 26.064 -16.863 120.125 1.00 46.52 C
ATOM 24 P A B1975 21.614 -21.552 121.508 1.00 57.85 P
ATOM 25 OP1 A B1975 21.226 -22.935 121.928 1.00 58.09 O
ATOM 26 OP2 A B1975 20.716 -20.797 120.610 1.00 57.56 O
ATOM 27 O5' A B1975 21.964 -20.681 122.776 1.00 58.21 O
TER
ATOM 2 P G A1488 26.831 -21.617 129.216 1.00 46.80 P
ATOM 3 OP1 G A1488 26.120 -22.931 129.209 1.00 46.89 O
ATOM 4 OP2 G A1488 28.281 -21.577 129.580 1.00 46.92 O
ATOM 5 O5' G A1488 26.634 -20.889 127.818 1.00 46.23 O
ATOM 6 C5' G A1488 27.553 -21.125 126.762 1.00 45.83 C
ATOM 7 C4' G A1488 27.242 -20.298 125.543 1.00 45.34 C
ATOM 8 O4' G A1488 27.293 -18.911 125.886 1.00 45.41 O
ATOM 9 C3' G A1488 28.229 -20.441 124.403 1.00 44.92 C
ATOM 10 O3' G A1488 27.904 -21.474 123.573 1.00 44.68 O
ATOM 11 C2' G A1488 28.172 -19.132 123.696 1.00 44.61 C
ATOM 12 O2' G A1488 27.080 -19.125 122.805 1.00 44.32 O
ATOM 13 C1' G A1488 27.896 -18.178 124.847 1.00 44.99 C
ATOM 14 N9 G A1488 29.130 -17.587 125.377 1.00 45.15 N
ATOM 15 C8 G A1488 29.544 -17.686 126.664 1.00 45.62 C
ATOM 16 N7 G A1488 30.663 -17.083 126.861 1.00 45.67 N
ATOM 17 C5 G A1488 30.976 -16.554 125.636 1.00 45.19 C
ATOM 18 C6 G A1488 32.062 -15.765 125.255 1.00 45.03 C
ATOM 19 O6 G A1488 32.977 -15.383 125.981 1.00 45.29 O
ATOM 20 N1 G A1488 32.019 -15.419 123.922 1.00 44.54 N
ATOM 21 C2 G A1488 31.030 -15.791 123.058 1.00 44.24 C
ATOM 22 N2 G A1488 31.127 -15.371 121.806 1.00 43.80 N
ATOM 23 N3 G A1488 29.998 -16.527 123.402 1.00 44.39 N
ATOM 24 C4 G A1488 30.042 -16.856 124.704 1.00 44.87 C
ATOM 25 P A A1489 28.993 -22.543 123.255 1.00 49.40 P
ATOM 26 OP1 A A1489 28.338 -23.567 122.387 1.00 49.18 O
ATOM 27 OP2 A A1489 29.583 -22.971 124.556 1.00 49.89 O
ATOM 28 O5' A A1489 30.058 -21.709 122.431 1.00 49.05 O
TER
ATOM 1 O3' A B1973 24.366 -19.945 114.881 1.00 45.53 O
ATOM 2 P A B1974 22.973 -19.780 115.672 1.00 45.34 P
ATOM 3 OP1 A B1974 22.141 -20.946 115.261 1.00 45.32 O
ATOM 4 OP2 A B1974 22.467 -18.417 115.411 1.00 45.24 O
ATOM 5 O5' A B1974 23.394 -19.938 117.195 1.00 45.79 O
ATOM 6 C5' A B1974 23.811 -21.210 117.672 1.00 45.99 C
ATOM 7 C4' A B1974 24.495 -21.108 118.992 1.00 46.37 C
ATOM 8 O4' A B1974 25.580 -20.173 118.893 1.00 46.25 O
ATOM 9 C3' A B1974 23.631 -20.610 120.129 1.00 46.75 C
ATOM 10 O3' A B1974 23.022 -21.690 120.783 1.00 47.05 O
ATOM 11 C2' A B1974 24.599 -19.863 121.021 1.00 46.97 C
ATOM 12 O2' A B1974 25.217 -20.767 121.907 1.00 47.29 O
ATOM 13 C1' A B1974 25.657 -19.383 120.041 1.00 46.59 C
ATOM 14 N9 A B1974 25.491 -17.996 119.623 1.00 46.41 N
ATOM 15 C8 A B1974 24.846 -17.650 118.482 1.00 46.05 C
ATOM 16 N7 A B1974 24.901 -16.365 118.251 1.00 45.94 N
ATOM 17 C5 A B1974 25.663 -15.847 119.278 1.00 46.23 C
ATOM 18 C6 A B1974 26.067 -14.540 119.567 1.00 46.29 C
ATOM 19 N6 A B1974 25.759 -13.483 118.847 1.00 46.05 N
ATOM 20 N1 A B1974 26.830 -14.363 120.645 1.00 46.62 N
ATOM 21 C2 A B1974 27.132 -15.460 121.375 1.00 46.87 C
ATOM 22 N3 A B1974 26.818 -16.741 121.210 1.00 46.85 N
ATOM 23 C4 A B1974 26.064 -16.863 120.125 1.00 46.52 C
ATOM 24 P A B1975 21.614 -21.552 121.508 1.00 57.85 P
ATOM 25 OP1 A B1975 21.226 -22.935 121.928 1.00 58.09 O
ATOM 26 OP2 A B1975 20.716 -20.797 120.610 1.00 57.56 O
ATOM 27 O5' A B1975 21.964 -20.681 122.776 1.00 58.21 O
TER
Atoms:
OP1: (26.120,-22.931,129.209)
OP2: (28.281,-21.577,129.580)
C3': (28.229,-20.441,124.403)
C1': (27.896,-18.178,124.847)
C5': (27.553,-21.125,126.762)
O6: (32.977,-15.383,125.981)
O4': (27.293,-18.911,125.886)
C8: (29.544,-17.686,126.664)
C2: (31.030,-15.791,123.058)
C6: (32.062,-15.765,125.255)
C5: (30.976,-16.554,125.636)
C4: (30.042,-16.856,124.704)
P: (26.831,-21.617,129.216)
C4': (27.242,-20.298,125.543)
C2': (28.172,-19.132,123.696)
O2': (27.080,-19.125,122.805)
N1: (32.019,-15.419,123.922)
N2: (31.127,-15.371,121.806)
N3: (29.998,-16.527,123.402)
N7: (30.663,-17.083,126.861)
N9: (29.130,-17.587,125.377)
O5': (26.634,-20.889,127.818)
O3': (27.904,-21.474,123.573)
OP2: (28.281,-21.577,129.580)
C3': (28.229,-20.441,124.403)
C1': (27.896,-18.178,124.847)
C5': (27.553,-21.125,126.762)
O6: (32.977,-15.383,125.981)
O4': (27.293,-18.911,125.886)
C8: (29.544,-17.686,126.664)
C2: (31.030,-15.791,123.058)
C6: (32.062,-15.765,125.255)
C5: (30.976,-16.554,125.636)
C4: (30.042,-16.856,124.704)
P: (26.831,-21.617,129.216)
C4': (27.242,-20.298,125.543)
C2': (28.172,-19.132,123.696)
O2': (27.080,-19.125,122.805)
N1: (32.019,-15.419,123.922)
N2: (31.127,-15.371,121.806)
N3: (29.998,-16.527,123.402)
N7: (30.663,-17.083,126.861)
N9: (29.130,-17.587,125.377)
O5': (26.634,-20.889,127.818)
O3': (27.904,-21.474,123.573)
OP1: (22.141,-20.946,115.261)
OP2: (22.467,-18.417,115.411)
C3': (23.631,-20.610,120.129)
C1': (25.657,-19.383,120.041)
C5': (23.811,-21.210,117.672)
O4': (25.580,-20.173,118.893)
C8: (24.846,-17.650,118.482)
O2': (25.217,-20.767,121.907)
C6: (26.067,-14.540,119.567)
C5: (25.663,-15.847,119.278)
C4: (26.064,-16.863,120.125)
P: (22.973,-19.780,115.672)
C4': (24.495,-21.108,118.992)
C2': (24.599,-19.863,121.021)
C2: (27.132,-15.460,121.375)
N1: (26.830,-14.363,120.645)
N3: (26.818,-16.741,121.210)
N6: (25.759,-13.483,118.847)
N7: (24.901,-16.365,118.251)
N9: (25.491,-17.996,119.623)
O5': (23.394,-19.938,117.195)
O3': (23.022,-21.690,120.783)
OP2: (22.467,-18.417,115.411)
C3': (23.631,-20.610,120.129)
C1': (25.657,-19.383,120.041)
C5': (23.811,-21.210,117.672)
O4': (25.580,-20.173,118.893)
C8: (24.846,-17.650,118.482)
O2': (25.217,-20.767,121.907)
C6: (26.067,-14.540,119.567)
C5: (25.663,-15.847,119.278)
C4: (26.064,-16.863,120.125)
P: (22.973,-19.780,115.672)
C4': (24.495,-21.108,118.992)
C2': (24.599,-19.863,121.021)
C2: (27.132,-15.460,121.375)
N1: (26.830,-14.363,120.645)
N3: (26.818,-16.741,121.210)
N6: (25.759,-13.483,118.847)
N7: (24.901,-16.365,118.251)
N9: (25.491,-17.996,119.623)
O5': (23.394,-19.938,117.195)
O3': (23.022,-21.690,120.783)
Image (generated by PyMOL):