ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:02018:02331

Extra

PDB:
ATOM 1 O3' C A2017 48.749 111.280 103.081 1.00 42.26 O
ATOM 2 P G A2018 47.969 111.602 104.450 1.00 44.68 P
ATOM 3 OP1 G A2018 46.840 110.648 104.677 1.00 43.88 O
ATOM 4 OP2 G A2018 47.718 113.066 104.481 1.00 42.48 O
ATOM 5 O5' G A2018 49.084 111.268 105.524 1.00 41.04 O
ATOM 6 C5' G A2018 48.985 111.704 106.868 1.00 39.68 C
ATOM 7 C4' G A2018 50.322 111.541 107.516 1.00 41.17 C
ATOM 8 O4' G A2018 50.658 110.128 107.514 1.00 41.10 O
ATOM 9 C3' G A2018 51.446 112.238 106.763 1.00 41.86 C
ATOM 10 O3' G A2018 52.420 112.684 107.680 1.00 44.19 O
ATOM 11 C2' G A2018 51.994 111.137 105.864 1.00 41.38 C
ATOM 12 O2' G A2018 53.349 111.329 105.515 1.00 40.51 O
ATOM 13 C1' G A2018 51.826 109.906 106.747 1.00 40.76 C
ATOM 14 N9 G A2018 51.639 108.673 105.982 1.00 40.78 N
ATOM 15 C8 G A2018 50.567 108.346 105.182 1.00 40.21 C
ATOM 16 N7 G A2018 50.678 107.168 104.632 1.00 39.07 N
ATOM 17 C5 G A2018 51.895 106.686 105.095 1.00 39.32 C
ATOM 18 C6 G A2018 52.548 105.450 104.853 1.00 39.25 C
ATOM 19 O6 G A2018 52.164 104.491 104.167 1.00 38.24 O
ATOM 20 N1 G A2018 53.765 105.382 105.520 1.00 38.96 N
ATOM 21 C2 G A2018 54.279 106.361 106.326 1.00 36.55 C
ATOM 22 N2 G A2018 55.462 106.107 106.873 1.00 36.71 N
ATOM 23 N3 G A2018 53.679 107.502 106.573 1.00 36.79 N
ATOM 24 C4 G A2018 52.501 107.603 105.927 1.00 39.19 C
ATOM 25 P G A2019 52.807 114.238 107.721 1.00 45.89 P
ATOM 26 OP1 G A2019 53.333 114.611 106.380 1.00 44.21 O
ATOM 27 OP2 G A2019 53.632 114.472 108.928 1.00 47.43 O
ATOM 28 O5' G A2019 51.424 114.989 107.972 1.00 45.39 O
TER

ATOM 1 O3' G B2330 56.873 114.944 110.921 1.00 41.98 O
ATOM 2 P A B2331 56.804 113.743 111.980 1.00 42.75 P
ATOM 3 OP1 A B2331 55.776 114.077 113.011 1.00 39.99 O
ATOM 4 OP2 A B2331 58.193 113.428 112.390 1.00 42.79 O
ATOM 5 O5' A B2331 56.285 112.514 111.124 1.00 41.00 O
ATOM 6 C5' A B2331 54.927 112.445 110.711 1.00 40.99 C
ATOM 7 C4' A B2331 54.697 111.173 109.958 1.00 42.73 C
ATOM 8 O4' A B2331 55.519 111.168 108.764 1.00 42.28 O
ATOM 9 C3' A B2331 55.115 109.914 110.692 1.00 42.18 C
ATOM 10 O3' A B2331 54.110 109.514 111.604 1.00 40.95 O
ATOM 11 C2' A B2331 55.297 108.933 109.543 1.00 43.48 C
ATOM 12 O2' A B2331 54.063 108.444 109.043 1.00 46.11 O
ATOM 13 C1' A B2331 55.930 109.840 108.485 1.00 42.94 C
ATOM 14 N9 A B2331 57.391 109.801 108.482 1.00 42.06 N
ATOM 15 C8 A B2331 58.272 110.771 108.885 1.00 41.91 C
ATOM 16 N7 A B2331 59.529 110.437 108.733 1.00 42.10 N
ATOM 17 C5 A B2331 59.472 109.159 108.200 1.00 42.13 C
ATOM 18 C6 A B2331 60.470 108.255 107.804 1.00 43.30 C
ATOM 19 N6 A B2331 61.775 108.509 107.880 1.00 43.82 N
ATOM 20 N1 A B2331 60.075 107.062 107.314 1.00 43.61 N
ATOM 21 C2 A B2331 58.764 106.809 107.228 1.00 43.62 C
ATOM 22 N3 A B2331 57.734 107.579 107.563 1.00 42.05 N
ATOM 23 C4 A B2331 58.162 108.753 108.047 1.00 41.66 C
ATOM 24 P G B2332 54.517 108.761 112.952 1.00 41.14 P
ATOM 25 OP1 G B2332 53.285 108.703 113.776 1.00 39.87 O
ATOM 26 OP2 G B2332 55.738 109.385 113.504 1.00 40.65 O
ATOM 27 O5' G B2332 54.898 107.292 112.471 1.00 40.42 O
TER

Atoms:
OP1: (46.840,110.648,104.677)
OP2: (47.718,113.066,104.481)
C3': (51.446,112.238,106.763)
C1': (51.826,109.906,106.747)
C5': (48.985,111.704,106.868)
O6: (52.164,104.491,104.167)
O4': (50.658,110.128,107.514)
C8: (50.567,108.346,105.182)
C2: (54.279,106.361,106.326)
C6: (52.548,105.450,104.853)
C5: (51.895,106.686,105.095)
C4: (52.501,107.603,105.927)
P: (47.969,111.602,104.450)
C4': (50.322,111.541,107.516)
C2': (51.994,111.137,105.864)
O2': (53.349,111.329,105.515)
N1: (53.765,105.382,105.520)
N2: (55.462,106.107,106.873)
N3: (53.679,107.502,106.573)
N7: (50.678,107.168,104.632)
N9: (51.639,108.673,105.982)
O5': (49.084,111.268,105.524)
O3': (52.420,112.684,107.680)
OP1: (55.776,114.077,113.011)
OP2: (58.193,113.428,112.390)
C3': (55.115,109.914,110.692)
C1': (55.930,109.840,108.485)
C5': (54.927,112.445,110.711)
O4': (55.519,111.168,108.764)
C8: (58.272,110.771,108.885)
O2': (54.063,108.444,109.043)
C6: (60.470,108.255,107.804)
C5: (59.472,109.159,108.200)
C4: (58.162,108.753,108.047)
P: (56.804,113.743,111.980)
C4': (54.697,111.173,109.958)
C2': (55.297,108.933,109.543)
C2: (58.764,106.809,107.228)
N1: (60.075,107.062,107.314)
N3: (57.734,107.579,107.563)
N6: (61.775,108.509,107.880)
N7: (59.529,110.437,108.733)
N9: (57.391,109.801,108.482)
O5': (56.285,112.514,111.124)
O3': (54.110,109.514,111.604)
Image (generated by PyMOL):
PyMOL image
show in jmol