Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12080:12056
Extra
PDB:
ATOM 1 O3' G A2079 -18.736 -16.606 79.314 1.00 58.16 O
ATOM 2 P G A2080 -19.809 -15.495 79.742 1.00 58.83 P
ATOM 3 OP1 G A2080 -19.906 -15.509 81.235 1.00 58.92 O
ATOM 4 OP2 G A2080 -21.043 -15.706 78.938 1.00 59.14 O
ATOM 5 O5' G A2080 -19.093 -14.168 79.268 1.00 58.60 O
ATOM 6 C5' G A2080 -17.909 -13.701 79.899 1.00 58.31 C
ATOM 7 C4' G A2080 -17.937 -12.207 80.034 1.00 58.32 C
ATOM 8 O4' G A2080 -16.603 -11.706 80.306 1.00 57.99 O
ATOM 9 C3' G A2080 -18.421 -11.452 78.802 1.00 58.40 C
ATOM 10 O3' G A2080 -19.129 -10.301 79.250 1.00 58.63 O
ATOM 11 C2' G A2080 -17.111 -11.034 78.144 1.00 58.03 C
ATOM 12 O2' G A2080 -17.225 -9.949 77.269 1.00 58.05 O
ATOM 13 C1' G A2080 -16.301 -10.687 79.375 1.00 57.88 C
ATOM 14 N9 G A2080 -14.856 -10.665 79.195 1.00 57.50 N
ATOM 15 C8 G A2080 -14.023 -11.287 78.309 1.00 57.25 C
ATOM 16 N7 G A2080 -12.773 -11.010 78.569 1.00 56.96 N
ATOM 17 C5 G A2080 -12.800 -10.171 79.685 1.00 57.02 C
ATOM 18 C6 G A2080 -11.785 -9.536 80.458 1.00 56.83 C
ATOM 19 O6 G A2080 -10.554 -9.576 80.302 1.00 56.53 O
ATOM 20 N1 G A2080 -12.293 -8.773 81.504 1.00 57.03 N
ATOM 21 C2 G A2080 -13.592 -8.627 81.825 1.00 57.37 C
ATOM 22 N2 G A2080 -13.860 -7.858 82.876 1.00 57.52 N
ATOM 23 N3 G A2080 -14.532 -9.214 81.122 1.00 57.54 N
ATOM 24 C4 G A2080 -14.078 -9.956 80.081 1.00 57.36 C
ATOM 25 P U A2081 -19.832 -9.292 78.220 1.00 59.25 P
ATOM 26 OP1 U A2081 -20.404 -10.111 77.120 1.00 59.36 O
ATOM 27 OP2 U A2081 -18.823 -8.240 77.890 1.00 58.99 O
ATOM 28 O5' U A2081 -21.018 -8.676 79.091 1.00 59.63 O
TER
ATOM 1 O3' C B2055 -14.229 -15.749 78.017 1.00 56.17 O
ATOM 2 P G B2056 -14.489 -15.002 76.625 1.00 75.66 P
ATOM 3 OP1 G B2056 -13.363 -14.040 76.401 1.00 75.36 O
ATOM 4 OP2 G B2056 -15.876 -14.492 76.656 1.00 76.00 O
ATOM 5 O5' G B2056 -14.365 -16.211 75.615 1.00 75.63 O
ATOM 6 C5' G B2056 -15.008 -16.201 74.362 1.00 75.77 C
ATOM 7 C4' G B2056 -14.424 -17.254 73.475 1.00 75.64 C
ATOM 8 O4' G B2056 -14.141 -18.455 74.272 1.00 75.62 O
ATOM 9 C3' G B2056 -15.328 -17.838 72.421 1.00 75.89 C
ATOM 10 O3' G B2056 -15.811 -16.958 71.373 1.00 75.99 O
ATOM 11 C2' G B2056 -14.521 -19.076 72.067 1.00 75.73 C
ATOM 12 O2' G B2056 -13.193 -18.720 71.697 1.00 75.39 O
ATOM 13 C1' G B2056 -14.445 -19.607 73.490 1.00 75.74 C
ATOM 14 N9 G B2056 -15.782 -20.079 73.884 1.00 76.10 N
ATOM 15 C8 G B2056 -16.734 -19.449 74.645 1.00 76.33 C
ATOM 16 N7 G B2056 -17.880 -20.078 74.660 1.00 76.66 N
ATOM 17 C5 G B2056 -17.691 -21.166 73.834 1.00 76.65 C
ATOM 18 C6 G B2056 -18.572 -22.225 73.465 1.00 76.95 C
ATOM 19 O6 G B2056 -19.727 -22.403 73.818 1.00 77.27 O
ATOM 20 N1 G B2056 -18.020 -23.163 72.601 1.00 76.86 N
ATOM 21 C2 G B2056 -16.727 -23.072 72.158 1.00 76.52 C
ATOM 22 N2 G B2056 -16.359 -24.046 71.327 1.00 76.50 N
ATOM 23 N3 G B2056 -15.878 -22.095 72.491 1.00 76.23 N
ATOM 24 C4 G B2056 -16.412 -21.176 73.336 1.00 76.32 C
ATOM 25 P G B2057 -14.962 -16.568 70.081 1.00 77.33 P
ATOM 26 OP1 G B2057 -13.536 -16.365 70.518 1.00 77.13 O
ATOM 27 OP2 G B2057 -15.665 -15.448 69.444 1.00 77.38 O
ATOM 28 O5' G B2057 -15.094 -17.863 69.181 1.00 77.52 O
TER
ATOM 2 P G A2080 -19.809 -15.495 79.742 1.00 58.83 P
ATOM 3 OP1 G A2080 -19.906 -15.509 81.235 1.00 58.92 O
ATOM 4 OP2 G A2080 -21.043 -15.706 78.938 1.00 59.14 O
ATOM 5 O5' G A2080 -19.093 -14.168 79.268 1.00 58.60 O
ATOM 6 C5' G A2080 -17.909 -13.701 79.899 1.00 58.31 C
ATOM 7 C4' G A2080 -17.937 -12.207 80.034 1.00 58.32 C
ATOM 8 O4' G A2080 -16.603 -11.706 80.306 1.00 57.99 O
ATOM 9 C3' G A2080 -18.421 -11.452 78.802 1.00 58.40 C
ATOM 10 O3' G A2080 -19.129 -10.301 79.250 1.00 58.63 O
ATOM 11 C2' G A2080 -17.111 -11.034 78.144 1.00 58.03 C
ATOM 12 O2' G A2080 -17.225 -9.949 77.269 1.00 58.05 O
ATOM 13 C1' G A2080 -16.301 -10.687 79.375 1.00 57.88 C
ATOM 14 N9 G A2080 -14.856 -10.665 79.195 1.00 57.50 N
ATOM 15 C8 G A2080 -14.023 -11.287 78.309 1.00 57.25 C
ATOM 16 N7 G A2080 -12.773 -11.010 78.569 1.00 56.96 N
ATOM 17 C5 G A2080 -12.800 -10.171 79.685 1.00 57.02 C
ATOM 18 C6 G A2080 -11.785 -9.536 80.458 1.00 56.83 C
ATOM 19 O6 G A2080 -10.554 -9.576 80.302 1.00 56.53 O
ATOM 20 N1 G A2080 -12.293 -8.773 81.504 1.00 57.03 N
ATOM 21 C2 G A2080 -13.592 -8.627 81.825 1.00 57.37 C
ATOM 22 N2 G A2080 -13.860 -7.858 82.876 1.00 57.52 N
ATOM 23 N3 G A2080 -14.532 -9.214 81.122 1.00 57.54 N
ATOM 24 C4 G A2080 -14.078 -9.956 80.081 1.00 57.36 C
ATOM 25 P U A2081 -19.832 -9.292 78.220 1.00 59.25 P
ATOM 26 OP1 U A2081 -20.404 -10.111 77.120 1.00 59.36 O
ATOM 27 OP2 U A2081 -18.823 -8.240 77.890 1.00 58.99 O
ATOM 28 O5' U A2081 -21.018 -8.676 79.091 1.00 59.63 O
TER
ATOM 1 O3' C B2055 -14.229 -15.749 78.017 1.00 56.17 O
ATOM 2 P G B2056 -14.489 -15.002 76.625 1.00 75.66 P
ATOM 3 OP1 G B2056 -13.363 -14.040 76.401 1.00 75.36 O
ATOM 4 OP2 G B2056 -15.876 -14.492 76.656 1.00 76.00 O
ATOM 5 O5' G B2056 -14.365 -16.211 75.615 1.00 75.63 O
ATOM 6 C5' G B2056 -15.008 -16.201 74.362 1.00 75.77 C
ATOM 7 C4' G B2056 -14.424 -17.254 73.475 1.00 75.64 C
ATOM 8 O4' G B2056 -14.141 -18.455 74.272 1.00 75.62 O
ATOM 9 C3' G B2056 -15.328 -17.838 72.421 1.00 75.89 C
ATOM 10 O3' G B2056 -15.811 -16.958 71.373 1.00 75.99 O
ATOM 11 C2' G B2056 -14.521 -19.076 72.067 1.00 75.73 C
ATOM 12 O2' G B2056 -13.193 -18.720 71.697 1.00 75.39 O
ATOM 13 C1' G B2056 -14.445 -19.607 73.490 1.00 75.74 C
ATOM 14 N9 G B2056 -15.782 -20.079 73.884 1.00 76.10 N
ATOM 15 C8 G B2056 -16.734 -19.449 74.645 1.00 76.33 C
ATOM 16 N7 G B2056 -17.880 -20.078 74.660 1.00 76.66 N
ATOM 17 C5 G B2056 -17.691 -21.166 73.834 1.00 76.65 C
ATOM 18 C6 G B2056 -18.572 -22.225 73.465 1.00 76.95 C
ATOM 19 O6 G B2056 -19.727 -22.403 73.818 1.00 77.27 O
ATOM 20 N1 G B2056 -18.020 -23.163 72.601 1.00 76.86 N
ATOM 21 C2 G B2056 -16.727 -23.072 72.158 1.00 76.52 C
ATOM 22 N2 G B2056 -16.359 -24.046 71.327 1.00 76.50 N
ATOM 23 N3 G B2056 -15.878 -22.095 72.491 1.00 76.23 N
ATOM 24 C4 G B2056 -16.412 -21.176 73.336 1.00 76.32 C
ATOM 25 P G B2057 -14.962 -16.568 70.081 1.00 77.33 P
ATOM 26 OP1 G B2057 -13.536 -16.365 70.518 1.00 77.13 O
ATOM 27 OP2 G B2057 -15.665 -15.448 69.444 1.00 77.38 O
ATOM 28 O5' G B2057 -15.094 -17.863 69.181 1.00 77.52 O
TER
Atoms:
OP1: (-19.906,-15.509,81.235)
OP2: (-21.043,-15.706,78.938)
C3': (-18.421,-11.452,78.802)
C1': (-16.301,-10.687,79.375)
C5': (-17.909,-13.701,79.899)
O6: (-10.554,-9.576,80.302)
O4': (-16.603,-11.706,80.306)
C8: (-14.023,-11.287,78.309)
C2: (-13.592,-8.627,81.825)
C6: (-11.785,-9.536,80.458)
C5: (-12.800,-10.171,79.685)
C4: (-14.078,-9.956,80.081)
P: (-19.809,-15.495,79.742)
C4': (-17.937,-12.207,80.034)
C2': (-17.111,-11.034,78.144)
O2': (-17.225,-9.949,77.269)
N1: (-12.293,-8.773,81.504)
N2: (-13.860,-7.858,82.876)
N3: (-14.532,-9.214,81.122)
N7: (-12.773,-11.010,78.569)
N9: (-14.856,-10.665,79.195)
O5': (-19.093,-14.168,79.268)
O3': (-19.129,-10.301,79.250)
OP2: (-21.043,-15.706,78.938)
C3': (-18.421,-11.452,78.802)
C1': (-16.301,-10.687,79.375)
C5': (-17.909,-13.701,79.899)
O6: (-10.554,-9.576,80.302)
O4': (-16.603,-11.706,80.306)
C8: (-14.023,-11.287,78.309)
C2: (-13.592,-8.627,81.825)
C6: (-11.785,-9.536,80.458)
C5: (-12.800,-10.171,79.685)
C4: (-14.078,-9.956,80.081)
P: (-19.809,-15.495,79.742)
C4': (-17.937,-12.207,80.034)
C2': (-17.111,-11.034,78.144)
O2': (-17.225,-9.949,77.269)
N1: (-12.293,-8.773,81.504)
N2: (-13.860,-7.858,82.876)
N3: (-14.532,-9.214,81.122)
N7: (-12.773,-11.010,78.569)
N9: (-14.856,-10.665,79.195)
O5': (-19.093,-14.168,79.268)
O3': (-19.129,-10.301,79.250)
OP1: (-13.363,-14.040,76.401)
OP2: (-15.876,-14.492,76.656)
C3': (-15.328,-17.838,72.421)
C1': (-14.445,-19.607,73.490)
C5': (-15.008,-16.201,74.362)
O6: (-19.727,-22.403,73.818)
O4': (-14.141,-18.455,74.272)
C8: (-16.734,-19.449,74.645)
C2: (-16.727,-23.072,72.158)
C6: (-18.572,-22.225,73.465)
C5: (-17.691,-21.166,73.834)
C4: (-16.412,-21.176,73.336)
P: (-14.489,-15.002,76.625)
C4': (-14.424,-17.254,73.475)
C2': (-14.521,-19.076,72.067)
O2': (-13.193,-18.720,71.697)
N1: (-18.020,-23.163,72.601)
N2: (-16.359,-24.046,71.327)
N3: (-15.878,-22.095,72.491)
N7: (-17.880,-20.078,74.660)
N9: (-15.782,-20.079,73.884)
O5': (-14.365,-16.211,75.615)
O3': (-15.811,-16.958,71.373)
OP2: (-15.876,-14.492,76.656)
C3': (-15.328,-17.838,72.421)
C1': (-14.445,-19.607,73.490)
C5': (-15.008,-16.201,74.362)
O6: (-19.727,-22.403,73.818)
O4': (-14.141,-18.455,74.272)
C8: (-16.734,-19.449,74.645)
C2: (-16.727,-23.072,72.158)
C6: (-18.572,-22.225,73.465)
C5: (-17.691,-21.166,73.834)
C4: (-16.412,-21.176,73.336)
P: (-14.489,-15.002,76.625)
C4': (-14.424,-17.254,73.475)
C2': (-14.521,-19.076,72.067)
O2': (-13.193,-18.720,71.697)
N1: (-18.020,-23.163,72.601)
N2: (-16.359,-24.046,71.327)
N3: (-15.878,-22.095,72.491)
N7: (-17.880,-20.078,74.660)
N9: (-15.782,-20.079,73.884)
O5': (-14.365,-16.211,75.615)
O3': (-15.811,-16.958,71.373)
Image (generated by PyMOL):