Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12106:12135
Extra
PDB:
ATOM 1 O3' U A2105 -3.807 12.021 61.039 1.00 48.01 O
ATOM 2 P A A2106 -4.691 12.333 62.305 1.00 43.72 P
ATOM 3 OP1 A A2106 -4.493 11.241 63.259 1.00 43.48 O
ATOM 4 OP2 A A2106 -6.044 12.584 61.807 1.00 44.10 O
ATOM 5 O5' A A2106 -4.057 13.694 62.873 1.00 43.76 O
ATOM 6 C5' A A2106 -3.096 13.700 63.919 1.00 43.51 C
ATOM 7 C4' A A2106 -2.971 15.057 64.575 1.00 43.68 C
ATOM 8 O4' A A2106 -3.199 16.129 63.620 1.00 43.94 O
ATOM 9 C3' A A2106 -3.959 15.379 65.671 1.00 43.92 C
ATOM 10 O3' A A2106 -3.710 14.697 66.861 1.00 43.73 O
ATOM 11 C2' A A2106 -3.795 16.874 65.798 1.00 44.14 C
ATOM 12 O2' A A2106 -2.584 17.196 66.459 1.00 43.92 O
ATOM 13 C1' A A2106 -3.666 17.278 64.328 1.00 44.22 C
ATOM 14 N9 A A2106 -4.981 17.681 63.811 1.00 44.61 N
ATOM 15 C8 A A2106 -5.730 17.021 62.913 1.00 44.70 C
ATOM 16 N7 A A2106 -6.900 17.565 62.756 1.00 45.08 N
ATOM 17 C5 A A2106 -6.941 18.658 63.577 1.00 45.25 C
ATOM 18 C6 A A2106 -7.971 19.613 63.779 1.00 45.68 C
ATOM 19 N6 A A2106 -9.146 19.584 63.120 1.00 45.99 N
ATOM 20 N1 A A2106 -7.742 20.573 64.697 1.00 45.78 N
ATOM 21 C2 A A2106 -6.518 20.514 65.294 1.00 45.46 C
ATOM 22 N3 A A2106 -5.484 19.662 65.156 1.00 45.05 N
ATOM 23 C4 A A2106 -5.770 18.718 64.268 1.00 44.97 C
ATOM 24 P G A2107 -4.901 13.902 67.579 1.00 42.39 P
ATOM 25 OP1 G A2107 -4.329 13.249 68.795 1.00 42.15 O
ATOM 26 OP2 G A2107 -5.535 13.023 66.542 1.00 42.42 O
ATOM 27 O5' G A2107 -5.873 15.079 68.027 1.00 42.80 O
TER
ATOM 1 O3' U B2134 -0.619 18.564 70.853 1.00 46.44 O
ATOM 2 P U B2135 -0.691 19.999 70.178 1.00 42.68 P
ATOM 3 OP1 U B2135 -0.126 19.870 68.785 1.00 42.53 O
ATOM 4 OP2 U B2135 -0.070 20.941 71.138 1.00 42.75 O
ATOM 5 O5' U B2135 -2.248 20.298 70.079 1.00 43.06 O
ATOM 6 C5' U B2135 -3.040 19.692 69.086 1.00 43.11 C
ATOM 7 C4' U B2135 -4.409 20.270 69.079 1.00 43.52 C
ATOM 8 O4' U B2135 -5.071 19.976 70.332 1.00 43.61 O
ATOM 9 C3' U B2135 -4.478 21.773 69.005 1.00 43.85 C
ATOM 10 O3' U B2135 -4.228 22.293 67.708 1.00 43.91 O
ATOM 11 C2' U B2135 -5.882 22.028 69.507 1.00 44.22 C
ATOM 12 O2' U B2135 -6.808 21.641 68.520 1.00 44.35 O
ATOM 13 C1' U B2135 -5.961 21.022 70.651 1.00 44.03 C
ATOM 14 N1 U B2135 -5.546 21.640 71.931 1.00 44.08 N
ATOM 15 C2 U B2135 -6.507 22.460 72.551 1.00 44.48 C
ATOM 16 O2 U B2135 -7.644 22.659 72.168 1.00 44.78 O
ATOM 17 N3 U B2135 -6.098 23.078 73.702 1.00 44.55 N
ATOM 18 C4 U B2135 -4.862 22.996 74.272 1.00 44.27 C
ATOM 19 O4 U B2135 -4.753 23.633 75.294 1.00 44.42 O
ATOM 20 C5 U B2135 -3.905 22.153 73.604 1.00 43.86 C
ATOM 21 C6 U B2135 -4.260 21.535 72.470 1.00 43.78 C
ATOM 22 P C B2136 -3.897 23.854 67.538 1.00 47.52 P
ATOM 23 OP1 C B2136 -3.581 24.073 66.180 1.00 47.52 O
ATOM 24 OP2 C B2136 -2.898 24.227 68.556 1.00 47.38 O
ATOM 25 O5' C B2136 -5.257 24.541 67.882 1.00 47.98 O
TER
ATOM 2 P A A2106 -4.691 12.333 62.305 1.00 43.72 P
ATOM 3 OP1 A A2106 -4.493 11.241 63.259 1.00 43.48 O
ATOM 4 OP2 A A2106 -6.044 12.584 61.807 1.00 44.10 O
ATOM 5 O5' A A2106 -4.057 13.694 62.873 1.00 43.76 O
ATOM 6 C5' A A2106 -3.096 13.700 63.919 1.00 43.51 C
ATOM 7 C4' A A2106 -2.971 15.057 64.575 1.00 43.68 C
ATOM 8 O4' A A2106 -3.199 16.129 63.620 1.00 43.94 O
ATOM 9 C3' A A2106 -3.959 15.379 65.671 1.00 43.92 C
ATOM 10 O3' A A2106 -3.710 14.697 66.861 1.00 43.73 O
ATOM 11 C2' A A2106 -3.795 16.874 65.798 1.00 44.14 C
ATOM 12 O2' A A2106 -2.584 17.196 66.459 1.00 43.92 O
ATOM 13 C1' A A2106 -3.666 17.278 64.328 1.00 44.22 C
ATOM 14 N9 A A2106 -4.981 17.681 63.811 1.00 44.61 N
ATOM 15 C8 A A2106 -5.730 17.021 62.913 1.00 44.70 C
ATOM 16 N7 A A2106 -6.900 17.565 62.756 1.00 45.08 N
ATOM 17 C5 A A2106 -6.941 18.658 63.577 1.00 45.25 C
ATOM 18 C6 A A2106 -7.971 19.613 63.779 1.00 45.68 C
ATOM 19 N6 A A2106 -9.146 19.584 63.120 1.00 45.99 N
ATOM 20 N1 A A2106 -7.742 20.573 64.697 1.00 45.78 N
ATOM 21 C2 A A2106 -6.518 20.514 65.294 1.00 45.46 C
ATOM 22 N3 A A2106 -5.484 19.662 65.156 1.00 45.05 N
ATOM 23 C4 A A2106 -5.770 18.718 64.268 1.00 44.97 C
ATOM 24 P G A2107 -4.901 13.902 67.579 1.00 42.39 P
ATOM 25 OP1 G A2107 -4.329 13.249 68.795 1.00 42.15 O
ATOM 26 OP2 G A2107 -5.535 13.023 66.542 1.00 42.42 O
ATOM 27 O5' G A2107 -5.873 15.079 68.027 1.00 42.80 O
TER
ATOM 1 O3' U B2134 -0.619 18.564 70.853 1.00 46.44 O
ATOM 2 P U B2135 -0.691 19.999 70.178 1.00 42.68 P
ATOM 3 OP1 U B2135 -0.126 19.870 68.785 1.00 42.53 O
ATOM 4 OP2 U B2135 -0.070 20.941 71.138 1.00 42.75 O
ATOM 5 O5' U B2135 -2.248 20.298 70.079 1.00 43.06 O
ATOM 6 C5' U B2135 -3.040 19.692 69.086 1.00 43.11 C
ATOM 7 C4' U B2135 -4.409 20.270 69.079 1.00 43.52 C
ATOM 8 O4' U B2135 -5.071 19.976 70.332 1.00 43.61 O
ATOM 9 C3' U B2135 -4.478 21.773 69.005 1.00 43.85 C
ATOM 10 O3' U B2135 -4.228 22.293 67.708 1.00 43.91 O
ATOM 11 C2' U B2135 -5.882 22.028 69.507 1.00 44.22 C
ATOM 12 O2' U B2135 -6.808 21.641 68.520 1.00 44.35 O
ATOM 13 C1' U B2135 -5.961 21.022 70.651 1.00 44.03 C
ATOM 14 N1 U B2135 -5.546 21.640 71.931 1.00 44.08 N
ATOM 15 C2 U B2135 -6.507 22.460 72.551 1.00 44.48 C
ATOM 16 O2 U B2135 -7.644 22.659 72.168 1.00 44.78 O
ATOM 17 N3 U B2135 -6.098 23.078 73.702 1.00 44.55 N
ATOM 18 C4 U B2135 -4.862 22.996 74.272 1.00 44.27 C
ATOM 19 O4 U B2135 -4.753 23.633 75.294 1.00 44.42 O
ATOM 20 C5 U B2135 -3.905 22.153 73.604 1.00 43.86 C
ATOM 21 C6 U B2135 -4.260 21.535 72.470 1.00 43.78 C
ATOM 22 P C B2136 -3.897 23.854 67.538 1.00 47.52 P
ATOM 23 OP1 C B2136 -3.581 24.073 66.180 1.00 47.52 O
ATOM 24 OP2 C B2136 -2.898 24.227 68.556 1.00 47.38 O
ATOM 25 O5' C B2136 -5.257 24.541 67.882 1.00 47.98 O
TER
Atoms:
OP1: (-4.493,11.241,63.259)
OP2: (-6.044,12.584,61.807)
C3': (-3.959,15.379,65.671)
C1': (-3.666,17.278,64.328)
C5': (-3.096,13.700,63.919)
O4': (-3.199,16.129,63.620)
C8: (-5.730,17.021,62.913)
O2': (-2.584,17.196,66.459)
C6: (-7.971,19.613,63.779)
C5: (-6.941,18.658,63.577)
C4: (-5.770,18.718,64.268)
P: (-4.691,12.333,62.305)
C4': (-2.971,15.057,64.575)
C2': (-3.795,16.874,65.798)
C2: (-6.518,20.514,65.294)
N1: (-7.742,20.573,64.697)
N3: (-5.484,19.662,65.156)
N6: (-9.146,19.584,63.120)
N7: (-6.900,17.565,62.756)
N9: (-4.981,17.681,63.811)
O5': (-4.057,13.694,62.873)
O3': (-3.710,14.697,66.861)
OP2: (-6.044,12.584,61.807)
C3': (-3.959,15.379,65.671)
C1': (-3.666,17.278,64.328)
C5': (-3.096,13.700,63.919)
O4': (-3.199,16.129,63.620)
C8: (-5.730,17.021,62.913)
O2': (-2.584,17.196,66.459)
C6: (-7.971,19.613,63.779)
C5: (-6.941,18.658,63.577)
C4: (-5.770,18.718,64.268)
P: (-4.691,12.333,62.305)
C4': (-2.971,15.057,64.575)
C2': (-3.795,16.874,65.798)
C2: (-6.518,20.514,65.294)
N1: (-7.742,20.573,64.697)
N3: (-5.484,19.662,65.156)
N6: (-9.146,19.584,63.120)
N7: (-6.900,17.565,62.756)
N9: (-4.981,17.681,63.811)
O5': (-4.057,13.694,62.873)
O3': (-3.710,14.697,66.861)
C4: (-4.862,22.996,74.272)
N3: (-6.098,23.078,73.702)
OP1: (-0.126,19.870,68.785)
OP2: (-0.070,20.941,71.138)
C2: (-6.507,22.460,72.551)
C1': (-5.961,21.022,70.651)
C3': (-4.478,21.773,69.005)
O5': (-2.248,20.298,70.079)
O4': (-5.071,19.976,70.332)
C5': (-3.040,19.692,69.086)
P: (-0.691,19.999,70.178)
C4': (-4.409,20.270,69.079)
C2': (-5.882,22.028,69.507)
O2': (-6.808,21.641,68.520)
N1: (-5.546,21.640,71.931)
O4: (-4.753,23.633,75.294)
O2: (-7.644,22.659,72.168)
C6: (-4.260,21.535,72.470)
C5: (-3.905,22.153,73.604)
O3': (-4.228,22.293,67.708)
N3: (-6.098,23.078,73.702)
OP1: (-0.126,19.870,68.785)
OP2: (-0.070,20.941,71.138)
C2: (-6.507,22.460,72.551)
C1': (-5.961,21.022,70.651)
C3': (-4.478,21.773,69.005)
O5': (-2.248,20.298,70.079)
O4': (-5.071,19.976,70.332)
C5': (-3.040,19.692,69.086)
P: (-0.691,19.999,70.178)
C4': (-4.409,20.270,69.079)
C2': (-5.882,22.028,69.507)
O2': (-6.808,21.641,68.520)
N1: (-5.546,21.640,71.931)
O4: (-4.753,23.633,75.294)
O2: (-7.644,22.659,72.168)
C6: (-4.260,21.535,72.470)
C5: (-3.905,22.153,73.604)
O3': (-4.228,22.293,67.708)
Image (generated by PyMOL):