Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A724:A2225
Extra
PDB:
ATOM 1 O3' A A 723 62.002 48.638 54.424 1.00114.14 O
ATOM 2 P A A 724 60.728 49.619 54.209 1.00112.11 P
ATOM 3 OP1 A A 724 59.583 48.763 53.768 1.00111.09 O
ATOM 4 OP2 A A 724 61.126 50.788 53.384 1.00110.86 O
ATOM 5 O5' A A 724 60.392 50.168 55.670 1.00111.32 O
ATOM 6 C5' A A 724 60.244 49.258 56.791 1.00109.41 C
ATOM 7 C4' A A 724 60.584 49.958 58.096 1.00107.62 C
ATOM 8 O4' A A 724 61.983 50.369 58.085 1.00108.96 O
ATOM 9 C3' A A 724 59.818 51.236 58.413 1.00106.23 C
ATOM 10 O3' A A 724 58.516 50.950 58.937 1.00102.03 O
ATOM 11 C2' A A 724 60.773 51.944 59.380 1.00107.23 C
ATOM 12 O2' A A 724 60.790 51.441 60.705 1.00108.73 O
ATOM 13 C1' A A 724 62.130 51.613 58.750 1.00108.54 C
ATOM 14 N9 A A 724 62.543 52.609 57.761 1.00109.52 N
ATOM 15 C8 A A 724 62.153 52.704 56.444 1.00109.95 C
ATOM 16 N7 A A 724 62.618 53.767 55.830 1.00110.02 N
ATOM 17 C5 A A 724 63.383 54.404 56.799 1.00109.96 C
ATOM 18 C6 A A 724 64.122 55.604 56.790 1.00109.78 C
ATOM 19 N6 A A 724 64.190 56.431 55.745 1.00108.82 N
ATOM 20 N1 A A 724 64.787 55.939 57.918 1.00109.90 N
ATOM 21 C2 A A 724 64.696 55.132 58.982 1.00110.47 C
ATOM 22 N3 A A 724 64.021 53.993 59.123 1.00110.60 N
ATOM 23 C4 A A 724 63.374 53.681 57.984 1.00110.13 C
ATOM 24 P G A 725 57.300 51.988 58.691 1.00 99.30 P
ATOM 25 OP1 G A 725 56.049 51.502 59.363 1.00 98.23 O
ATOM 26 OP2 G A 725 57.260 52.326 57.243 1.00 99.97 O
ATOM 27 O5' G A 725 57.778 53.274 59.500 1.00 96.86 O
TER
ATOM 1 O3' G B2224 69.574 59.141 59.589 1.00 66.23 O
ATOM 2 P U B2225 68.927 60.437 60.267 1.00 64.87 P
ATOM 3 OP1 U B2225 68.760 61.463 59.208 1.00 64.44 O
ATOM 4 OP2 U B2225 69.726 60.754 61.485 1.00 64.99 O
ATOM 5 O5' U B2225 67.481 59.923 60.694 1.00 63.74 O
ATOM 6 C5' U B2225 66.536 59.504 59.692 1.00 61.85 C
ATOM 7 C4' U B2225 65.310 58.902 60.330 1.00 61.65 C
ATOM 8 O4' U B2225 65.653 57.691 61.060 1.00 62.02 O
ATOM 9 C3' U B2225 64.589 59.753 61.350 1.00 61.11 C
ATOM 10 O3' U B2225 63.845 60.785 60.704 1.00 59.18 O
ATOM 11 C2' U B2225 63.793 58.702 62.132 1.00 61.48 C
ATOM 12 O2' U B2225 62.619 58.209 61.506 1.00 61.76 O
ATOM 13 C1' U B2225 64.801 57.549 62.192 1.00 61.71 C
ATOM 14 N1 U B2225 65.634 57.542 63.411 1.00 62.05 N
ATOM 15 C2 U B2225 65.168 56.854 64.533 1.00 61.83 C
ATOM 16 O2 U B2225 64.124 56.216 64.551 1.00 61.24 O
ATOM 17 N3 U B2225 65.977 56.947 65.641 1.00 62.25 N
ATOM 18 C4 U B2225 67.170 57.632 65.750 1.00 62.53 C
ATOM 19 O4 U B2225 67.714 57.732 66.856 1.00 64.59 O
ATOM 20 C5 U B2225 67.595 58.280 64.550 1.00 62.05 C
ATOM 21 C6 U B2225 66.837 58.216 63.453 1.00 61.56 C
ATOM 22 P G B2226 63.127 61.935 61.585 1.00 57.96 P
ATOM 23 OP1 G B2226 62.627 63.004 60.680 1.00 56.90 O
ATOM 24 OP2 G B2226 64.048 62.296 62.704 1.00 58.04 O
ATOM 25 O5' G B2226 61.845 61.156 62.126 1.00 57.85 O
TER
ATOM 2 P A A 724 60.728 49.619 54.209 1.00112.11 P
ATOM 3 OP1 A A 724 59.583 48.763 53.768 1.00111.09 O
ATOM 4 OP2 A A 724 61.126 50.788 53.384 1.00110.86 O
ATOM 5 O5' A A 724 60.392 50.168 55.670 1.00111.32 O
ATOM 6 C5' A A 724 60.244 49.258 56.791 1.00109.41 C
ATOM 7 C4' A A 724 60.584 49.958 58.096 1.00107.62 C
ATOM 8 O4' A A 724 61.983 50.369 58.085 1.00108.96 O
ATOM 9 C3' A A 724 59.818 51.236 58.413 1.00106.23 C
ATOM 10 O3' A A 724 58.516 50.950 58.937 1.00102.03 O
ATOM 11 C2' A A 724 60.773 51.944 59.380 1.00107.23 C
ATOM 12 O2' A A 724 60.790 51.441 60.705 1.00108.73 O
ATOM 13 C1' A A 724 62.130 51.613 58.750 1.00108.54 C
ATOM 14 N9 A A 724 62.543 52.609 57.761 1.00109.52 N
ATOM 15 C8 A A 724 62.153 52.704 56.444 1.00109.95 C
ATOM 16 N7 A A 724 62.618 53.767 55.830 1.00110.02 N
ATOM 17 C5 A A 724 63.383 54.404 56.799 1.00109.96 C
ATOM 18 C6 A A 724 64.122 55.604 56.790 1.00109.78 C
ATOM 19 N6 A A 724 64.190 56.431 55.745 1.00108.82 N
ATOM 20 N1 A A 724 64.787 55.939 57.918 1.00109.90 N
ATOM 21 C2 A A 724 64.696 55.132 58.982 1.00110.47 C
ATOM 22 N3 A A 724 64.021 53.993 59.123 1.00110.60 N
ATOM 23 C4 A A 724 63.374 53.681 57.984 1.00110.13 C
ATOM 24 P G A 725 57.300 51.988 58.691 1.00 99.30 P
ATOM 25 OP1 G A 725 56.049 51.502 59.363 1.00 98.23 O
ATOM 26 OP2 G A 725 57.260 52.326 57.243 1.00 99.97 O
ATOM 27 O5' G A 725 57.778 53.274 59.500 1.00 96.86 O
TER
ATOM 1 O3' G B2224 69.574 59.141 59.589 1.00 66.23 O
ATOM 2 P U B2225 68.927 60.437 60.267 1.00 64.87 P
ATOM 3 OP1 U B2225 68.760 61.463 59.208 1.00 64.44 O
ATOM 4 OP2 U B2225 69.726 60.754 61.485 1.00 64.99 O
ATOM 5 O5' U B2225 67.481 59.923 60.694 1.00 63.74 O
ATOM 6 C5' U B2225 66.536 59.504 59.692 1.00 61.85 C
ATOM 7 C4' U B2225 65.310 58.902 60.330 1.00 61.65 C
ATOM 8 O4' U B2225 65.653 57.691 61.060 1.00 62.02 O
ATOM 9 C3' U B2225 64.589 59.753 61.350 1.00 61.11 C
ATOM 10 O3' U B2225 63.845 60.785 60.704 1.00 59.18 O
ATOM 11 C2' U B2225 63.793 58.702 62.132 1.00 61.48 C
ATOM 12 O2' U B2225 62.619 58.209 61.506 1.00 61.76 O
ATOM 13 C1' U B2225 64.801 57.549 62.192 1.00 61.71 C
ATOM 14 N1 U B2225 65.634 57.542 63.411 1.00 62.05 N
ATOM 15 C2 U B2225 65.168 56.854 64.533 1.00 61.83 C
ATOM 16 O2 U B2225 64.124 56.216 64.551 1.00 61.24 O
ATOM 17 N3 U B2225 65.977 56.947 65.641 1.00 62.25 N
ATOM 18 C4 U B2225 67.170 57.632 65.750 1.00 62.53 C
ATOM 19 O4 U B2225 67.714 57.732 66.856 1.00 64.59 O
ATOM 20 C5 U B2225 67.595 58.280 64.550 1.00 62.05 C
ATOM 21 C6 U B2225 66.837 58.216 63.453 1.00 61.56 C
ATOM 22 P G B2226 63.127 61.935 61.585 1.00 57.96 P
ATOM 23 OP1 G B2226 62.627 63.004 60.680 1.00 56.90 O
ATOM 24 OP2 G B2226 64.048 62.296 62.704 1.00 58.04 O
ATOM 25 O5' G B2226 61.845 61.156 62.126 1.00 57.85 O
TER
Atoms:
OP1: (59.583,48.763,53.768)
OP2: (61.126,50.788,53.384)
C3': (59.818,51.236,58.413)
C1': (62.130,51.613,58.750)
C5': (60.244,49.258,56.791)
O4': (61.983,50.369,58.085)
C8: (62.153,52.704,56.444)
O2': (60.790,51.441,60.705)
C6: (64.122,55.604,56.790)
C5: (63.383,54.404,56.799)
C4: (63.374,53.681,57.984)
P: (60.728,49.619,54.209)
C4': (60.584,49.958,58.096)
C2': (60.773,51.944,59.380)
C2: (64.696,55.132,58.982)
N1: (64.787,55.939,57.918)
N3: (64.021,53.993,59.123)
N6: (64.190,56.431,55.745)
N7: (62.618,53.767,55.830)
N9: (62.543,52.609,57.761)
O5': (60.392,50.168,55.670)
O3': (58.516,50.950,58.937)
OP2: (61.126,50.788,53.384)
C3': (59.818,51.236,58.413)
C1': (62.130,51.613,58.750)
C5': (60.244,49.258,56.791)
O4': (61.983,50.369,58.085)
C8: (62.153,52.704,56.444)
O2': (60.790,51.441,60.705)
C6: (64.122,55.604,56.790)
C5: (63.383,54.404,56.799)
C4: (63.374,53.681,57.984)
P: (60.728,49.619,54.209)
C4': (60.584,49.958,58.096)
C2': (60.773,51.944,59.380)
C2: (64.696,55.132,58.982)
N1: (64.787,55.939,57.918)
N3: (64.021,53.993,59.123)
N6: (64.190,56.431,55.745)
N7: (62.618,53.767,55.830)
N9: (62.543,52.609,57.761)
O5': (60.392,50.168,55.670)
O3': (58.516,50.950,58.937)
C4: (67.170,57.632,65.750)
N3: (65.977,56.947,65.641)
OP1: (68.760,61.463,59.208)
OP2: (69.726,60.754,61.485)
C2: (65.168,56.854,64.533)
C1': (64.801,57.549,62.192)
C3': (64.589,59.753,61.350)
O5': (67.481,59.923,60.694)
O4': (65.653,57.691,61.060)
C5': (66.536,59.504,59.692)
P: (68.927,60.437,60.267)
C4': (65.310,58.902,60.330)
C2': (63.793,58.702,62.132)
O2': (62.619,58.209,61.506)
N1: (65.634,57.542,63.411)
O4: (67.714,57.732,66.856)
O2: (64.124,56.216,64.551)
C6: (66.837,58.216,63.453)
C5: (67.595,58.280,64.550)
O3': (63.845,60.785,60.704)
N3: (65.977,56.947,65.641)
OP1: (68.760,61.463,59.208)
OP2: (69.726,60.754,61.485)
C2: (65.168,56.854,64.533)
C1': (64.801,57.549,62.192)
C3': (64.589,59.753,61.350)
O5': (67.481,59.923,60.694)
O4': (65.653,57.691,61.060)
C5': (66.536,59.504,59.692)
P: (68.927,60.437,60.267)
C4': (65.310,58.902,60.330)
C2': (63.793,58.702,62.132)
O2': (62.619,58.209,61.506)
N1: (65.634,57.542,63.411)
O4: (67.714,57.732,66.856)
O2: (64.124,56.216,64.551)
C6: (66.837,58.216,63.453)
C5: (67.595,58.280,64.550)
O3': (63.845,60.785,60.704)
Image (generated by PyMOL):