Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A56:A8
Extra
PDB:
ATOM 1 O3' A A 55 -11.386 35.876 12.379 1.00 24.95 O
ATOM 2 P A A 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 3 OP1 A A 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 4 OP2 A A 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 5 O5' A A 56 -10.574 37.103 14.402 1.00 26.30 O
ATOM 6 C5' A A 56 -11.375 36.445 15.370 1.00 25.35 C
ATOM 7 C4' A A 56 -10.532 35.952 16.518 1.00 21.59 C
ATOM 8 O4' A A 56 -9.679 34.868 16.061 1.00 21.13 O
ATOM 9 C3' A A 56 -9.578 36.971 17.128 1.00 24.77 C
ATOM 10 O3' A A 56 -10.208 37.786 18.110 1.00 25.35 O
ATOM 11 C2' A A 56 -8.506 36.067 17.713 1.00 22.08 C
ATOM 12 O2' A A 56 -9.050 35.446 18.865 1.00 22.16 O
ATOM 13 C1' A A 56 -8.402 34.975 16.649 1.00 20.72 C
ATOM 14 N9 A A 56 -7.434 35.266 15.569 1.00 18.11 N
ATOM 15 C8 A A 56 -7.647 35.930 14.388 1.00 22.19 C
ATOM 16 N7 A A 56 -6.589 36.002 13.600 1.00 20.75 N
ATOM 17 C5 A A 56 -5.617 35.308 14.308 1.00 21.11 C
ATOM 18 C6 A A 56 -4.266 35.015 14.030 1.00 19.54 C
ATOM 19 N6 A A 56 -3.639 35.389 12.915 1.00 19.58 N
ATOM 20 N1 A A 56 -3.572 34.320 14.957 1.00 19.35 N
ATOM 21 C2 A A 56 -4.205 33.942 16.076 1.00 19.84 C
ATOM 22 N3 A A 56 -5.473 34.153 16.448 1.00 20.03 N
ATOM 23 C4 A A 56 -6.127 34.854 15.514 1.00 19.39 C
ATOM 24 P A A 57 -9.662 39.227 18.562 1.00 26.21 P
ATOM 25 OP1 A A 57 -10.584 39.712 19.624 1.00 24.07 O
ATOM 26 OP2 A A 57 -9.453 40.032 17.335 1.00 23.16 O
ATOM 27 O5' A A 57 -8.241 38.918 19.235 1.00 21.69 O
TER
ATOM 1 O3' G B 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 2 P U B 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 3 OP1 U B 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 4 OP2 U B 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 5 O5' U B 8 1.028 31.300 18.215 1.00 17.90 O
ATOM 6 C5' U B 8 1.166 32.363 17.285 1.00 16.95 C
ATOM 7 C4' U B 8 0.475 33.590 17.817 1.00 17.94 C
ATOM 8 O4' U B 8 -0.955 33.353 17.860 1.00 19.45 O
ATOM 9 C3' U B 8 0.808 33.951 19.258 1.00 17.22 C
ATOM 10 O3' U B 8 2.047 34.623 19.383 1.00 17.83 O
ATOM 11 C2' U B 8 -0.408 34.769 19.682 1.00 15.20 C
ATOM 12 O2' U B 8 -0.406 36.058 19.094 1.00 16.52 O
ATOM 13 C1' U B 8 -1.516 33.971 19.005 1.00 17.31 C
ATOM 14 N1 U B 8 -2.070 32.923 19.883 1.00 16.54 N
ATOM 15 C2 U B 8 -3.140 33.278 20.699 1.00 19.82 C
ATOM 16 O2 U B 8 -3.605 34.408 20.725 1.00 18.20 O
ATOM 17 N3 U B 8 -3.623 32.260 21.492 1.00 20.64 N
ATOM 18 C4 U B 8 -3.161 30.957 21.551 1.00 21.09 C
ATOM 19 O4 U B 8 -3.715 30.148 22.308 1.00 20.68 O
ATOM 20 C5 U B 8 -2.053 30.672 20.684 1.00 17.78 C
ATOM 21 C6 U B 8 -1.565 31.643 19.894 1.00 16.90 C
ATOM 22 P U B 9 2.893 34.562 20.751 1.00 18.31 P
ATOM 23 OP1 U B 9 3.650 33.296 20.809 1.00 15.97 O
ATOM 24 OP2 U B 9 1.903 34.832 21.801 1.00 18.33 O
ATOM 25 O5' U B 9 3.826 35.844 20.502 1.00 18.59 O
TER
ATOM 2 P A A 56 -11.114 37.361 12.932 1.00 26.63 P
ATOM 3 OP1 A A 56 -12.438 38.022 12.992 1.00 28.97 O
ATOM 4 OP2 A A 56 -10.077 38.018 12.104 1.00 23.26 O
ATOM 5 O5' A A 56 -10.574 37.103 14.402 1.00 26.30 O
ATOM 6 C5' A A 56 -11.375 36.445 15.370 1.00 25.35 C
ATOM 7 C4' A A 56 -10.532 35.952 16.518 1.00 21.59 C
ATOM 8 O4' A A 56 -9.679 34.868 16.061 1.00 21.13 O
ATOM 9 C3' A A 56 -9.578 36.971 17.128 1.00 24.77 C
ATOM 10 O3' A A 56 -10.208 37.786 18.110 1.00 25.35 O
ATOM 11 C2' A A 56 -8.506 36.067 17.713 1.00 22.08 C
ATOM 12 O2' A A 56 -9.050 35.446 18.865 1.00 22.16 O
ATOM 13 C1' A A 56 -8.402 34.975 16.649 1.00 20.72 C
ATOM 14 N9 A A 56 -7.434 35.266 15.569 1.00 18.11 N
ATOM 15 C8 A A 56 -7.647 35.930 14.388 1.00 22.19 C
ATOM 16 N7 A A 56 -6.589 36.002 13.600 1.00 20.75 N
ATOM 17 C5 A A 56 -5.617 35.308 14.308 1.00 21.11 C
ATOM 18 C6 A A 56 -4.266 35.015 14.030 1.00 19.54 C
ATOM 19 N6 A A 56 -3.639 35.389 12.915 1.00 19.58 N
ATOM 20 N1 A A 56 -3.572 34.320 14.957 1.00 19.35 N
ATOM 21 C2 A A 56 -4.205 33.942 16.076 1.00 19.84 C
ATOM 22 N3 A A 56 -5.473 34.153 16.448 1.00 20.03 N
ATOM 23 C4 A A 56 -6.127 34.854 15.514 1.00 19.39 C
ATOM 24 P A A 57 -9.662 39.227 18.562 1.00 26.21 P
ATOM 25 OP1 A A 57 -10.584 39.712 19.624 1.00 24.07 O
ATOM 26 OP2 A A 57 -9.453 40.032 17.335 1.00 23.16 O
ATOM 27 O5' A A 57 -8.241 38.918 19.235 1.00 21.69 O
TER
ATOM 1 O3' G B 7 0.633 29.455 16.623 1.00 19.30 O
ATOM 2 P U B 8 1.542 29.843 17.890 1.00 19.41 P
ATOM 3 OP1 U B 8 2.919 29.873 17.394 1.00 20.32 O
ATOM 4 OP2 U B 8 1.181 28.962 19.005 1.00 17.93 O
ATOM 5 O5' U B 8 1.028 31.300 18.215 1.00 17.90 O
ATOM 6 C5' U B 8 1.166 32.363 17.285 1.00 16.95 C
ATOM 7 C4' U B 8 0.475 33.590 17.817 1.00 17.94 C
ATOM 8 O4' U B 8 -0.955 33.353 17.860 1.00 19.45 O
ATOM 9 C3' U B 8 0.808 33.951 19.258 1.00 17.22 C
ATOM 10 O3' U B 8 2.047 34.623 19.383 1.00 17.83 O
ATOM 11 C2' U B 8 -0.408 34.769 19.682 1.00 15.20 C
ATOM 12 O2' U B 8 -0.406 36.058 19.094 1.00 16.52 O
ATOM 13 C1' U B 8 -1.516 33.971 19.005 1.00 17.31 C
ATOM 14 N1 U B 8 -2.070 32.923 19.883 1.00 16.54 N
ATOM 15 C2 U B 8 -3.140 33.278 20.699 1.00 19.82 C
ATOM 16 O2 U B 8 -3.605 34.408 20.725 1.00 18.20 O
ATOM 17 N3 U B 8 -3.623 32.260 21.492 1.00 20.64 N
ATOM 18 C4 U B 8 -3.161 30.957 21.551 1.00 21.09 C
ATOM 19 O4 U B 8 -3.715 30.148 22.308 1.00 20.68 O
ATOM 20 C5 U B 8 -2.053 30.672 20.684 1.00 17.78 C
ATOM 21 C6 U B 8 -1.565 31.643 19.894 1.00 16.90 C
ATOM 22 P U B 9 2.893 34.562 20.751 1.00 18.31 P
ATOM 23 OP1 U B 9 3.650 33.296 20.809 1.00 15.97 O
ATOM 24 OP2 U B 9 1.903 34.832 21.801 1.00 18.33 O
ATOM 25 O5' U B 9 3.826 35.844 20.502 1.00 18.59 O
TER
Atoms:
OP1: (-12.438,38.022,12.992)
OP2: (-10.077,38.018,12.104)
C3': (-9.578,36.971,17.128)
C1': (-8.402,34.975,16.649)
C5': (-11.375,36.445,15.370)
O4': (-9.679,34.868,16.061)
C8: (-7.647,35.930,14.388)
O2': (-9.050,35.446,18.865)
C6: (-4.266,35.015,14.030)
C5: (-5.617,35.308,14.308)
C4: (-6.127,34.854,15.514)
P: (-11.114,37.361,12.932)
C4': (-10.532,35.952,16.518)
C2': (-8.506,36.067,17.713)
C2: (-4.205,33.942,16.076)
N1: (-3.572,34.320,14.957)
N3: (-5.473,34.153,16.448)
N6: (-3.639,35.389,12.915)
N7: (-6.589,36.002,13.600)
N9: (-7.434,35.266,15.569)
O5': (-10.574,37.103,14.402)
O3': (-10.208,37.786,18.110)
OP2: (-10.077,38.018,12.104)
C3': (-9.578,36.971,17.128)
C1': (-8.402,34.975,16.649)
C5': (-11.375,36.445,15.370)
O4': (-9.679,34.868,16.061)
C8: (-7.647,35.930,14.388)
O2': (-9.050,35.446,18.865)
C6: (-4.266,35.015,14.030)
C5: (-5.617,35.308,14.308)
C4: (-6.127,34.854,15.514)
P: (-11.114,37.361,12.932)
C4': (-10.532,35.952,16.518)
C2': (-8.506,36.067,17.713)
C2: (-4.205,33.942,16.076)
N1: (-3.572,34.320,14.957)
N3: (-5.473,34.153,16.448)
N6: (-3.639,35.389,12.915)
N7: (-6.589,36.002,13.600)
N9: (-7.434,35.266,15.569)
O5': (-10.574,37.103,14.402)
O3': (-10.208,37.786,18.110)
C4: (-3.161,30.957,21.551)
N3: (-3.623,32.260,21.492)
OP1: (2.919,29.873,17.394)
OP2: (1.181,28.962,19.005)
C2: (-3.140,33.278,20.699)
C1': (-1.516,33.971,19.005)
C3': (0.808,33.951,19.258)
O5': (1.028,31.300,18.215)
O4': (-0.955,33.353,17.860)
C5': (1.166,32.363,17.285)
P: (1.542,29.843,17.890)
C4': (0.475,33.590,17.817)
C2': (-0.408,34.769,19.682)
O2': (-0.406,36.058,19.094)
N1: (-2.070,32.923,19.883)
O4: (-3.715,30.148,22.308)
O2: (-3.605,34.408,20.725)
C6: (-1.565,31.643,19.894)
C5: (-2.053,30.672,20.684)
O3': (2.047,34.623,19.383)
N3: (-3.623,32.260,21.492)
OP1: (2.919,29.873,17.394)
OP2: (1.181,28.962,19.005)
C2: (-3.140,33.278,20.699)
C1': (-1.516,33.971,19.005)
C3': (0.808,33.951,19.258)
O5': (1.028,31.300,18.215)
O4': (-0.955,33.353,17.860)
C5': (1.166,32.363,17.285)
P: (1.542,29.843,17.890)
C4': (0.475,33.590,17.817)
C2': (-0.408,34.769,19.682)
O2': (-0.406,36.058,19.094)
N1: (-2.070,32.923,19.883)
O4: (-3.715,30.148,22.308)
O2: (-3.605,34.408,20.725)
C6: (-1.565,31.643,19.894)
C5: (-2.053,30.672,20.684)
O3': (2.047,34.623,19.383)
Image (generated by PyMOL):