Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5V:D9:E60
Extra
PDB:
ATOM 1 O3' G A 8 -3.726 27.018 128.154 1.00 80.85 O
ATOM 2 P A A 9 -2.432 26.213 127.644 1.00 83.49 P
ATOM 3 OP1 A A 9 -1.751 25.607 128.817 1.00 81.97 O
ATOM 4 OP2 A A 9 -1.680 27.125 126.746 1.00 79.74 O
ATOM 5 O5' A A 9 -3.031 25.038 126.752 1.00 86.19 O
ATOM 6 C5' A A 9 -3.790 23.990 127.347 1.00 82.74 C
ATOM 7 C4' A A 9 -4.136 22.946 126.316 1.00 74.65 C
ATOM 8 O4' A A 9 -4.999 23.526 125.305 1.00 68.66 O
ATOM 9 C3' A A 9 -2.958 22.399 125.532 1.00 76.70 C
ATOM 10 O3' A A 9 -2.332 21.346 126.255 1.00 77.26 O
ATOM 11 C2' A A 9 -3.634 21.885 124.269 1.00 75.60 C
ATOM 12 O2' A A 9 -4.267 20.642 124.488 1.00 84.28 O
ATOM 13 C1' A A 9 -4.704 22.953 124.043 1.00 70.32 C
ATOM 14 N9 A A 9 -4.287 24.024 123.140 1.00 67.40 N
ATOM 15 C8 A A 9 -3.727 25.235 123.465 1.00 66.26 C
ATOM 16 N7 A A 9 -3.482 25.999 122.429 1.00 64.13 N
ATOM 17 C5 A A 9 -3.902 25.238 121.347 1.00 65.14 C
ATOM 18 C6 A A 9 -3.913 25.484 119.962 1.00 65.69 C
ATOM 19 N6 A A 9 -3.469 26.612 119.405 1.00 67.81 N
ATOM 20 N1 A A 9 -4.401 24.516 119.156 1.00 66.82 N
ATOM 21 C2 A A 9 -4.844 23.384 119.713 1.00 66.60 C
ATOM 22 N3 A A 9 -4.886 23.035 120.998 1.00 67.42 N
ATOM 23 C4 A A 9 -4.395 24.017 121.771 1.00 66.07 C
ATOM 24 P C A 10 -0.747 21.133 126.132 1.00 77.89 P
ATOM 25 OP1 C A 10 -0.378 19.960 126.965 1.00 79.93 O
ATOM 26 OP2 C A 10 -0.099 22.449 126.384 1.00 75.67 O
ATOM 27 O5' C A 10 -0.545 20.736 124.602 1.00 79.56 O
TER
ATOM 1 O3' U B 59 -3.471 17.552 121.719 1.00 79.84 O
ATOM 2 P U B 60 -4.970 17.713 122.291 1.00 66.52 P
ATOM 3 OP1 U B 60 -4.883 18.550 123.510 1.00 74.85 O
ATOM 4 OP2 U B 60 -5.614 16.378 122.368 1.00 71.58 O
ATOM 5 O5' U B 60 -5.715 18.563 121.167 1.00 77.46 O
ATOM 6 C5' U B 60 -6.651 19.571 121.529 1.00 80.66 C
ATOM 7 C4' U B 60 -7.660 19.786 120.426 1.00 81.60 C
ATOM 8 O4' U B 60 -7.011 20.444 119.307 1.00 81.46 O
ATOM 9 C3' U B 60 -8.209 18.473 119.881 1.00 80.60 C
ATOM 10 O3' U B 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 11 C2' U B 60 -7.421 18.176 118.604 1.00 79.27 C
ATOM 12 O2' U B 60 -8.233 17.712 117.550 1.00 94.84 O
ATOM 13 C1' U B 60 -6.936 19.569 118.203 1.00 79.19 C
ATOM 14 N1 U B 60 -5.619 19.694 117.564 1.00 79.03 N
ATOM 15 C2 U B 60 -5.580 19.589 116.186 1.00 78.66 C
ATOM 16 O2 U B 60 -6.572 19.379 115.512 1.00 78.25 O
ATOM 17 N3 U B 60 -4.340 19.743 115.625 1.00 77.86 N
ATOM 18 C4 U B 60 -3.158 19.982 116.284 1.00 77.20 C
ATOM 19 O4 U B 60 -2.118 20.096 115.634 1.00 78.09 O
ATOM 20 C5 U B 60 -3.275 20.070 117.710 1.00 76.70 C
ATOM 21 C6 U B 60 -4.474 19.923 118.287 1.00 78.85 C
ATOM 22 P A B 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 23 OP1 A B 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 24 OP2 A B 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 25 O5' A B 61 -10.952 17.420 117.983 1.00 83.96 O
TER
ATOM 2 P A A 9 -2.432 26.213 127.644 1.00 83.49 P
ATOM 3 OP1 A A 9 -1.751 25.607 128.817 1.00 81.97 O
ATOM 4 OP2 A A 9 -1.680 27.125 126.746 1.00 79.74 O
ATOM 5 O5' A A 9 -3.031 25.038 126.752 1.00 86.19 O
ATOM 6 C5' A A 9 -3.790 23.990 127.347 1.00 82.74 C
ATOM 7 C4' A A 9 -4.136 22.946 126.316 1.00 74.65 C
ATOM 8 O4' A A 9 -4.999 23.526 125.305 1.00 68.66 O
ATOM 9 C3' A A 9 -2.958 22.399 125.532 1.00 76.70 C
ATOM 10 O3' A A 9 -2.332 21.346 126.255 1.00 77.26 O
ATOM 11 C2' A A 9 -3.634 21.885 124.269 1.00 75.60 C
ATOM 12 O2' A A 9 -4.267 20.642 124.488 1.00 84.28 O
ATOM 13 C1' A A 9 -4.704 22.953 124.043 1.00 70.32 C
ATOM 14 N9 A A 9 -4.287 24.024 123.140 1.00 67.40 N
ATOM 15 C8 A A 9 -3.727 25.235 123.465 1.00 66.26 C
ATOM 16 N7 A A 9 -3.482 25.999 122.429 1.00 64.13 N
ATOM 17 C5 A A 9 -3.902 25.238 121.347 1.00 65.14 C
ATOM 18 C6 A A 9 -3.913 25.484 119.962 1.00 65.69 C
ATOM 19 N6 A A 9 -3.469 26.612 119.405 1.00 67.81 N
ATOM 20 N1 A A 9 -4.401 24.516 119.156 1.00 66.82 N
ATOM 21 C2 A A 9 -4.844 23.384 119.713 1.00 66.60 C
ATOM 22 N3 A A 9 -4.886 23.035 120.998 1.00 67.42 N
ATOM 23 C4 A A 9 -4.395 24.017 121.771 1.00 66.07 C
ATOM 24 P C A 10 -0.747 21.133 126.132 1.00 77.89 P
ATOM 25 OP1 C A 10 -0.378 19.960 126.965 1.00 79.93 O
ATOM 26 OP2 C A 10 -0.099 22.449 126.384 1.00 75.67 O
ATOM 27 O5' C A 10 -0.545 20.736 124.602 1.00 79.56 O
TER
ATOM 1 O3' U B 59 -3.471 17.552 121.719 1.00 79.84 O
ATOM 2 P U B 60 -4.970 17.713 122.291 1.00 66.52 P
ATOM 3 OP1 U B 60 -4.883 18.550 123.510 1.00 74.85 O
ATOM 4 OP2 U B 60 -5.614 16.378 122.368 1.00 71.58 O
ATOM 5 O5' U B 60 -5.715 18.563 121.167 1.00 77.46 O
ATOM 6 C5' U B 60 -6.651 19.571 121.529 1.00 80.66 C
ATOM 7 C4' U B 60 -7.660 19.786 120.426 1.00 81.60 C
ATOM 8 O4' U B 60 -7.011 20.444 119.307 1.00 81.46 O
ATOM 9 C3' U B 60 -8.209 18.473 119.881 1.00 80.60 C
ATOM 10 O3' U B 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 11 C2' U B 60 -7.421 18.176 118.604 1.00 79.27 C
ATOM 12 O2' U B 60 -8.233 17.712 117.550 1.00 94.84 O
ATOM 13 C1' U B 60 -6.936 19.569 118.203 1.00 79.19 C
ATOM 14 N1 U B 60 -5.619 19.694 117.564 1.00 79.03 N
ATOM 15 C2 U B 60 -5.580 19.589 116.186 1.00 78.66 C
ATOM 16 O2 U B 60 -6.572 19.379 115.512 1.00 78.25 O
ATOM 17 N3 U B 60 -4.340 19.743 115.625 1.00 77.86 N
ATOM 18 C4 U B 60 -3.158 19.982 116.284 1.00 77.20 C
ATOM 19 O4 U B 60 -2.118 20.096 115.634 1.00 78.09 O
ATOM 20 C5 U B 60 -3.275 20.070 117.710 1.00 76.70 C
ATOM 21 C6 U B 60 -4.474 19.923 118.287 1.00 78.85 C
ATOM 22 P A B 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 23 OP1 A B 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 24 OP2 A B 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 25 O5' A B 61 -10.952 17.420 117.983 1.00 83.96 O
TER
Atoms:
OP1: (-1.751,25.607,128.817)
OP2: (-1.680,27.125,126.746)
C3': (-2.958,22.399,125.532)
C1': (-4.704,22.953,124.043)
C5': (-3.790,23.990,127.347)
O4': (-4.999,23.526,125.305)
C8: (-3.727,25.235,123.465)
O2': (-4.267,20.642,124.488)
C6: (-3.913,25.484,119.962)
C5: (-3.902,25.238,121.347)
C4: (-4.395,24.017,121.771)
P: (-2.432,26.213,127.644)
C4': (-4.136,22.946,126.316)
C2': (-3.634,21.885,124.269)
C2: (-4.844,23.384,119.713)
N1: (-4.401,24.516,119.156)
N3: (-4.886,23.035,120.998)
N6: (-3.469,26.612,119.405)
N7: (-3.482,25.999,122.429)
N9: (-4.287,24.024,123.140)
O5': (-3.031,25.038,126.752)
O3': (-2.332,21.346,126.255)
OP2: (-1.680,27.125,126.746)
C3': (-2.958,22.399,125.532)
C1': (-4.704,22.953,124.043)
C5': (-3.790,23.990,127.347)
O4': (-4.999,23.526,125.305)
C8: (-3.727,25.235,123.465)
O2': (-4.267,20.642,124.488)
C6: (-3.913,25.484,119.962)
C5: (-3.902,25.238,121.347)
C4: (-4.395,24.017,121.771)
P: (-2.432,26.213,127.644)
C4': (-4.136,22.946,126.316)
C2': (-3.634,21.885,124.269)
C2: (-4.844,23.384,119.713)
N1: (-4.401,24.516,119.156)
N3: (-4.886,23.035,120.998)
N6: (-3.469,26.612,119.405)
N7: (-3.482,25.999,122.429)
N9: (-4.287,24.024,123.140)
O5': (-3.031,25.038,126.752)
O3': (-2.332,21.346,126.255)
C4: (-3.158,19.982,116.284)
N3: (-4.340,19.743,115.625)
OP1: (-4.883,18.550,123.510)
OP2: (-5.614,16.378,122.368)
C2: (-5.580,19.589,116.186)
C1': (-6.936,19.569,118.203)
C3': (-8.209,18.473,119.881)
O5': (-5.715,18.563,121.167)
O4': (-7.011,20.444,119.307)
C5': (-6.651,19.571,121.529)
P: (-4.970,17.713,122.291)
C4': (-7.660,19.786,120.426)
C2': (-7.421,18.176,118.604)
O2': (-8.233,17.712,117.550)
N1: (-5.619,19.694,117.564)
O4: (-2.118,20.096,115.634)
O2: (-6.572,19.379,115.512)
C6: (-4.474,19.923,118.287)
C5: (-3.275,20.070,117.710)
O3': (-9.639,18.374,119.915)
N3: (-4.340,19.743,115.625)
OP1: (-4.883,18.550,123.510)
OP2: (-5.614,16.378,122.368)
C2: (-5.580,19.589,116.186)
C1': (-6.936,19.569,118.203)
C3': (-8.209,18.473,119.881)
O5': (-5.715,18.563,121.167)
O4': (-7.011,20.444,119.307)
C5': (-6.651,19.571,121.529)
P: (-4.970,17.713,122.291)
C4': (-7.660,19.786,120.426)
C2': (-7.421,18.176,118.604)
O2': (-8.233,17.712,117.550)
N1: (-5.619,19.694,117.564)
O4: (-2.118,20.096,115.634)
O2: (-6.572,19.379,115.512)
C6: (-4.474,19.923,118.287)
C5: (-3.275,20.070,117.710)
O3': (-9.639,18.374,119.915)
Image (generated by PyMOL):