Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A1297:A1351
Extra
PDB:
ATOM 1 O3' U A1296 9.914 -54.152 -32.979 1.00 49.94 O
ATOM 2 P A A1297 10.425 -52.921 -33.866 1.00 48.58 P
ATOM 3 OP1 A A1297 9.813 -53.006 -35.208 1.00 53.91 O
ATOM 4 OP2 A A1297 11.898 -52.891 -33.745 1.00 57.90 O
ATOM 5 O5' A A1297 9.848 -51.624 -33.145 1.00 47.85 O
ATOM 6 C5' A A1297 8.459 -51.481 -32.885 1.00 44.70 C
ATOM 7 C4' A A1297 8.159 -50.052 -32.502 1.00 48.71 C
ATOM 8 O4' A A1297 8.820 -49.744 -31.236 1.00 46.35 O
ATOM 9 C3' A A1297 8.648 -49.016 -33.515 1.00 50.15 C
ATOM 10 O3' A A1297 7.719 -47.923 -33.613 1.00 46.52 O
ATOM 11 C2' A A1297 9.972 -48.551 -32.907 1.00 46.60 C
ATOM 12 O2' A A1297 10.297 -47.229 -33.253 1.00 48.18 O
ATOM 13 C1' A A1297 9.689 -48.645 -31.409 1.00 48.04 C
ATOM 14 N9 A A1297 10.882 -48.844 -30.577 1.00 53.69 N
ATOM 15 C8 A A1297 12.003 -49.612 -30.817 1.00 54.07 C
ATOM 16 N7 A A1297 12.903 -49.553 -29.861 1.00 56.46 N
ATOM 17 C5 A A1297 12.338 -48.698 -28.924 1.00 51.71 C
ATOM 18 C6 A A1297 12.788 -48.218 -27.664 1.00 50.68 C
ATOM 19 N6 A A1297 13.954 -48.540 -27.101 1.00 52.95 N
ATOM 20 N1 A A1297 11.975 -47.377 -26.994 1.00 51.93 N
ATOM 21 C2 A A1297 10.792 -47.047 -27.548 1.00 60.91 C
ATOM 22 N3 A A1297 10.259 -47.429 -28.713 1.00 59.40 N
ATOM 23 C4 A A1297 11.092 -48.258 -29.356 1.00 54.82 C
ATOM 24 P G A1298 6.728 -47.803 -34.888 1.00 48.32 P
ATOM 25 OP1 G A1298 5.340 -47.996 -34.367 1.00 39.17 O
ATOM 26 OP2 G A1298 7.225 -48.687 -35.993 1.00 44.46 O
ATOM 27 O5' G A1298 6.927 -46.293 -35.390 1.00 47.91 O
TER
ATOM 1 O3' A B1350 10.938 -50.951 -22.708 1.00 48.48 O
ATOM 2 P U B1351 11.770 -49.924 -21.808 1.00 48.71 P
ATOM 3 OP1 U B1351 13.134 -49.857 -22.420 1.00 47.82 O
ATOM 4 OP2 U B1351 11.630 -50.312 -20.379 1.00 49.45 O
ATOM 5 O5' U B1351 10.957 -48.576 -22.030 1.00 44.35 O
ATOM 6 C5' U B1351 9.602 -48.512 -21.626 1.00 44.41 C
ATOM 7 C4' U B1351 8.829 -47.486 -22.420 1.00 52.47 C
ATOM 8 O4' U B1351 9.162 -46.139 -22.011 1.00 52.28 O
ATOM 9 C3' U B1351 8.852 -47.519 -23.954 1.00 53.04 C
ATOM 10 O3' U B1351 7.513 -47.445 -24.436 1.00 56.38 O
ATOM 11 C2' U B1351 9.578 -46.223 -24.312 1.00 42.73 C
ATOM 12 O2' U B1351 9.129 -45.672 -25.530 1.00 43.43 O
ATOM 13 C1' U B1351 9.163 -45.321 -23.149 1.00 49.94 C
ATOM 14 N1 U B1351 9.972 -44.118 -22.898 1.00 56.36 N
ATOM 15 C2 U B1351 11.351 -44.231 -22.789 1.00 57.18 C
ATOM 16 O2 U B1351 11.959 -45.291 -22.841 1.00 54.15 O
ATOM 17 N3 U B1351 12.001 -43.036 -22.617 1.00 55.66 N
ATOM 18 C4 U B1351 11.435 -41.774 -22.554 1.00 59.09 C
ATOM 19 O4 U B1351 12.165 -40.782 -22.679 1.00 69.78 O
ATOM 20 C5 U B1351 10.015 -41.761 -22.626 1.00 51.97 C
ATOM 21 C6 U B1351 9.352 -42.896 -22.795 1.00 53.97 C
ATOM 22 P U B1352 6.708 -48.809 -24.732 1.00 56.10 P
ATOM 23 OP1 U B1352 5.360 -48.429 -25.227 1.00 56.44 O
ATOM 24 OP2 U B1352 6.830 -49.727 -23.559 1.00 46.96 O
ATOM 25 O5' U B1352 7.505 -49.475 -25.938 1.00 52.14 O
TER
ATOM 2 P A A1297 10.425 -52.921 -33.866 1.00 48.58 P
ATOM 3 OP1 A A1297 9.813 -53.006 -35.208 1.00 53.91 O
ATOM 4 OP2 A A1297 11.898 -52.891 -33.745 1.00 57.90 O
ATOM 5 O5' A A1297 9.848 -51.624 -33.145 1.00 47.85 O
ATOM 6 C5' A A1297 8.459 -51.481 -32.885 1.00 44.70 C
ATOM 7 C4' A A1297 8.159 -50.052 -32.502 1.00 48.71 C
ATOM 8 O4' A A1297 8.820 -49.744 -31.236 1.00 46.35 O
ATOM 9 C3' A A1297 8.648 -49.016 -33.515 1.00 50.15 C
ATOM 10 O3' A A1297 7.719 -47.923 -33.613 1.00 46.52 O
ATOM 11 C2' A A1297 9.972 -48.551 -32.907 1.00 46.60 C
ATOM 12 O2' A A1297 10.297 -47.229 -33.253 1.00 48.18 O
ATOM 13 C1' A A1297 9.689 -48.645 -31.409 1.00 48.04 C
ATOM 14 N9 A A1297 10.882 -48.844 -30.577 1.00 53.69 N
ATOM 15 C8 A A1297 12.003 -49.612 -30.817 1.00 54.07 C
ATOM 16 N7 A A1297 12.903 -49.553 -29.861 1.00 56.46 N
ATOM 17 C5 A A1297 12.338 -48.698 -28.924 1.00 51.71 C
ATOM 18 C6 A A1297 12.788 -48.218 -27.664 1.00 50.68 C
ATOM 19 N6 A A1297 13.954 -48.540 -27.101 1.00 52.95 N
ATOM 20 N1 A A1297 11.975 -47.377 -26.994 1.00 51.93 N
ATOM 21 C2 A A1297 10.792 -47.047 -27.548 1.00 60.91 C
ATOM 22 N3 A A1297 10.259 -47.429 -28.713 1.00 59.40 N
ATOM 23 C4 A A1297 11.092 -48.258 -29.356 1.00 54.82 C
ATOM 24 P G A1298 6.728 -47.803 -34.888 1.00 48.32 P
ATOM 25 OP1 G A1298 5.340 -47.996 -34.367 1.00 39.17 O
ATOM 26 OP2 G A1298 7.225 -48.687 -35.993 1.00 44.46 O
ATOM 27 O5' G A1298 6.927 -46.293 -35.390 1.00 47.91 O
TER
ATOM 1 O3' A B1350 10.938 -50.951 -22.708 1.00 48.48 O
ATOM 2 P U B1351 11.770 -49.924 -21.808 1.00 48.71 P
ATOM 3 OP1 U B1351 13.134 -49.857 -22.420 1.00 47.82 O
ATOM 4 OP2 U B1351 11.630 -50.312 -20.379 1.00 49.45 O
ATOM 5 O5' U B1351 10.957 -48.576 -22.030 1.00 44.35 O
ATOM 6 C5' U B1351 9.602 -48.512 -21.626 1.00 44.41 C
ATOM 7 C4' U B1351 8.829 -47.486 -22.420 1.00 52.47 C
ATOM 8 O4' U B1351 9.162 -46.139 -22.011 1.00 52.28 O
ATOM 9 C3' U B1351 8.852 -47.519 -23.954 1.00 53.04 C
ATOM 10 O3' U B1351 7.513 -47.445 -24.436 1.00 56.38 O
ATOM 11 C2' U B1351 9.578 -46.223 -24.312 1.00 42.73 C
ATOM 12 O2' U B1351 9.129 -45.672 -25.530 1.00 43.43 O
ATOM 13 C1' U B1351 9.163 -45.321 -23.149 1.00 49.94 C
ATOM 14 N1 U B1351 9.972 -44.118 -22.898 1.00 56.36 N
ATOM 15 C2 U B1351 11.351 -44.231 -22.789 1.00 57.18 C
ATOM 16 O2 U B1351 11.959 -45.291 -22.841 1.00 54.15 O
ATOM 17 N3 U B1351 12.001 -43.036 -22.617 1.00 55.66 N
ATOM 18 C4 U B1351 11.435 -41.774 -22.554 1.00 59.09 C
ATOM 19 O4 U B1351 12.165 -40.782 -22.679 1.00 69.78 O
ATOM 20 C5 U B1351 10.015 -41.761 -22.626 1.00 51.97 C
ATOM 21 C6 U B1351 9.352 -42.896 -22.795 1.00 53.97 C
ATOM 22 P U B1352 6.708 -48.809 -24.732 1.00 56.10 P
ATOM 23 OP1 U B1352 5.360 -48.429 -25.227 1.00 56.44 O
ATOM 24 OP2 U B1352 6.830 -49.727 -23.559 1.00 46.96 O
ATOM 25 O5' U B1352 7.505 -49.475 -25.938 1.00 52.14 O
TER
Atoms:
OP1: (9.813,-53.006,-35.208)
OP2: (11.898,-52.891,-33.745)
C3': (8.648,-49.016,-33.515)
C1': (9.689,-48.645,-31.409)
C5': (8.459,-51.481,-32.885)
O4': (8.820,-49.744,-31.236)
C8: (12.003,-49.612,-30.817)
O2': (10.297,-47.229,-33.253)
C6: (12.788,-48.218,-27.664)
C5: (12.338,-48.698,-28.924)
C4: (11.092,-48.258,-29.356)
P: (10.425,-52.921,-33.866)
C4': (8.159,-50.052,-32.502)
C2': (9.972,-48.551,-32.907)
C2: (10.792,-47.047,-27.548)
N1: (11.975,-47.377,-26.994)
N3: (10.259,-47.429,-28.713)
N6: (13.954,-48.540,-27.101)
N7: (12.903,-49.553,-29.861)
N9: (10.882,-48.844,-30.577)
O5': (9.848,-51.624,-33.145)
O3': (7.719,-47.923,-33.613)
OP2: (11.898,-52.891,-33.745)
C3': (8.648,-49.016,-33.515)
C1': (9.689,-48.645,-31.409)
C5': (8.459,-51.481,-32.885)
O4': (8.820,-49.744,-31.236)
C8: (12.003,-49.612,-30.817)
O2': (10.297,-47.229,-33.253)
C6: (12.788,-48.218,-27.664)
C5: (12.338,-48.698,-28.924)
C4: (11.092,-48.258,-29.356)
P: (10.425,-52.921,-33.866)
C4': (8.159,-50.052,-32.502)
C2': (9.972,-48.551,-32.907)
C2: (10.792,-47.047,-27.548)
N1: (11.975,-47.377,-26.994)
N3: (10.259,-47.429,-28.713)
N6: (13.954,-48.540,-27.101)
N7: (12.903,-49.553,-29.861)
N9: (10.882,-48.844,-30.577)
O5': (9.848,-51.624,-33.145)
O3': (7.719,-47.923,-33.613)
C4: (11.435,-41.774,-22.554)
N3: (12.001,-43.036,-22.617)
OP1: (13.134,-49.857,-22.420)
OP2: (11.630,-50.312,-20.379)
C2: (11.351,-44.231,-22.789)
C1': (9.163,-45.321,-23.149)
C3': (8.852,-47.519,-23.954)
O5': (10.957,-48.576,-22.030)
O4': (9.162,-46.139,-22.011)
C5': (9.602,-48.512,-21.626)
P: (11.770,-49.924,-21.808)
C4': (8.829,-47.486,-22.420)
C2': (9.578,-46.223,-24.312)
O2': (9.129,-45.672,-25.530)
N1: (9.972,-44.118,-22.898)
O4: (12.165,-40.782,-22.679)
O2: (11.959,-45.291,-22.841)
C6: (9.352,-42.896,-22.795)
C5: (10.015,-41.761,-22.626)
O3': (7.513,-47.445,-24.436)
N3: (12.001,-43.036,-22.617)
OP1: (13.134,-49.857,-22.420)
OP2: (11.630,-50.312,-20.379)
C2: (11.351,-44.231,-22.789)
C1': (9.163,-45.321,-23.149)
C3': (8.852,-47.519,-23.954)
O5': (10.957,-48.576,-22.030)
O4': (9.162,-46.139,-22.011)
C5': (9.602,-48.512,-21.626)
P: (11.770,-49.924,-21.808)
C4': (8.829,-47.486,-22.420)
C2': (9.578,-46.223,-24.312)
O2': (9.129,-45.672,-25.530)
N1: (9.972,-44.118,-22.898)
O4: (12.165,-40.782,-22.679)
O2: (11.959,-45.291,-22.841)
C6: (9.352,-42.896,-22.795)
C5: (10.015,-41.761,-22.626)
O3': (7.513,-47.445,-24.436)
Image (generated by PyMOL):