Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:A1390:A1501
Extra
PDB:
ATOM 1 O3' U A1389 -88.724 43.444 -5.309 1.00 17.20 O
ATOM 2 P G A1390 -88.238 42.928 -6.753 1.00 20.92 P
ATOM 3 OP1 G A1390 -86.808 43.328 -6.907 1.00 20.92 O
ATOM 4 OP2 G A1390 -89.228 43.417 -7.745 1.00 20.92 O
ATOM 5 O5' G A1390 -88.352 41.350 -6.629 1.00 20.92 O
ATOM 6 C5' G A1390 -87.964 40.677 -5.450 1.00 20.92 C
ATOM 7 C4' G A1390 -88.452 39.267 -5.480 1.00 20.92 C
ATOM 8 O4' G A1390 -89.746 39.179 -4.827 1.00 20.92 O
ATOM 9 C3' G A1390 -88.692 38.703 -6.863 1.00 20.92 C
ATOM 10 O3' G A1390 -87.497 38.235 -7.463 1.00 20.92 O
ATOM 11 C2' G A1390 -89.718 37.615 -6.598 1.00 20.92 C
ATOM 12 O2' G A1390 -89.094 36.462 -6.070 1.00 20.92 O
ATOM 13 C1' G A1390 -90.561 38.246 -5.493 1.00 20.92 C
ATOM 14 N9 G A1390 -91.731 38.962 -6.021 1.00 21.14 N
ATOM 15 C8 G A1390 -91.675 40.272 -6.342 1.00 21.14 C
ATOM 16 N7 G A1390 -92.799 40.742 -6.771 1.00 21.14 N
ATOM 17 C5 G A1390 -93.655 39.678 -6.737 1.00 21.14 C
ATOM 18 C6 G A1390 -95.003 39.645 -7.106 1.00 21.14 C
ATOM 19 O6 G A1390 -95.694 40.563 -7.550 1.00 21.14 O
ATOM 20 N1 G A1390 -95.530 38.395 -6.917 1.00 21.14 N
ATOM 21 C2 G A1390 -94.832 37.325 -6.451 1.00 21.14 C
ATOM 22 N2 G A1390 -95.530 36.191 -6.352 1.00 21.14 N
ATOM 23 N3 G A1390 -93.562 37.349 -6.108 1.00 21.14 N
ATOM 24 C4 G A1390 -93.027 38.565 -6.269 1.00 21.14 C
ATOM 25 P U A1391 -87.460 37.820 -9.017 1.00 10.04 P
ATOM 26 OP1 U A1391 -86.178 37.098 -9.238 1.00 10.04 O
ATOM 27 OP2 U A1391 -87.741 39.042 -9.822 1.00 10.04 O
ATOM 28 O5' U A1391 -88.691 36.819 -9.137 1.00 10.04 O
TER
ATOM 1 O3' A B1500 -91.820 35.104 -2.869 1.00 17.15 O
ATOM 2 P A B1501 -90.545 35.663 -2.073 1.00 5.87 P
ATOM 3 OP1 A B1501 -90.963 36.891 -1.344 1.00 5.87 O
ATOM 4 OP2 A B1501 -89.440 35.769 -3.060 1.00 5.87 O
ATOM 5 O5' A B1501 -90.269 34.476 -1.039 1.00 5.87 O
ATOM 6 C5' A B1501 -88.959 34.011 -0.773 1.00 5.87 C
ATOM 7 C4' A B1501 -88.909 33.230 0.511 1.00 5.87 C
ATOM 8 O4' A B1501 -89.061 34.137 1.635 1.00 5.87 O
ATOM 9 C3' A B1501 -89.998 32.192 0.676 1.00 5.87 C
ATOM 10 O3' A B1501 -89.489 31.108 1.445 1.00 5.87 O
ATOM 11 C2' A B1501 -91.052 32.941 1.476 1.00 5.87 C
ATOM 12 O2' A B1501 -91.941 32.134 2.191 1.00 5.87 O
ATOM 13 C1' A B1501 -90.193 33.760 2.402 1.00 5.87 C
ATOM 14 N9 A B1501 -90.859 34.974 2.895 1.00 6.15 N
ATOM 15 C8 A B1501 -91.496 35.983 2.185 1.00 6.15 C
ATOM 16 N7 A B1501 -91.997 36.943 2.935 1.00 6.15 N
ATOM 17 C5 A B1501 -91.681 36.540 4.230 1.00 6.15 C
ATOM 18 C6 A B1501 -91.943 37.099 5.491 1.00 6.15 C
ATOM 19 N6 A B1501 -92.598 38.242 5.720 1.00 6.15 N
ATOM 20 N1 A B1501 -91.492 36.422 6.563 1.00 6.15 N
ATOM 21 C2 A B1501 -90.839 35.267 6.384 1.00 6.15 C
ATOM 22 N3 A B1501 -90.524 34.630 5.262 1.00 6.15 N
ATOM 23 C4 A B1501 -90.983 35.333 4.215 1.00 6.15 C
ATOM 24 P G B1502 -89.471 29.630 0.822 1.00 2.97 P
ATOM 25 OP1 G B1502 -89.525 28.673 1.968 1.00 2.97 O
ATOM 26 OP2 G B1502 -88.334 29.566 -0.132 1.00 2.97 O
ATOM 27 O5' G B1502 -90.841 29.583 0.021 1.00 2.97 O
TER
ATOM 2 P G A1390 -88.238 42.928 -6.753 1.00 20.92 P
ATOM 3 OP1 G A1390 -86.808 43.328 -6.907 1.00 20.92 O
ATOM 4 OP2 G A1390 -89.228 43.417 -7.745 1.00 20.92 O
ATOM 5 O5' G A1390 -88.352 41.350 -6.629 1.00 20.92 O
ATOM 6 C5' G A1390 -87.964 40.677 -5.450 1.00 20.92 C
ATOM 7 C4' G A1390 -88.452 39.267 -5.480 1.00 20.92 C
ATOM 8 O4' G A1390 -89.746 39.179 -4.827 1.00 20.92 O
ATOM 9 C3' G A1390 -88.692 38.703 -6.863 1.00 20.92 C
ATOM 10 O3' G A1390 -87.497 38.235 -7.463 1.00 20.92 O
ATOM 11 C2' G A1390 -89.718 37.615 -6.598 1.00 20.92 C
ATOM 12 O2' G A1390 -89.094 36.462 -6.070 1.00 20.92 O
ATOM 13 C1' G A1390 -90.561 38.246 -5.493 1.00 20.92 C
ATOM 14 N9 G A1390 -91.731 38.962 -6.021 1.00 21.14 N
ATOM 15 C8 G A1390 -91.675 40.272 -6.342 1.00 21.14 C
ATOM 16 N7 G A1390 -92.799 40.742 -6.771 1.00 21.14 N
ATOM 17 C5 G A1390 -93.655 39.678 -6.737 1.00 21.14 C
ATOM 18 C6 G A1390 -95.003 39.645 -7.106 1.00 21.14 C
ATOM 19 O6 G A1390 -95.694 40.563 -7.550 1.00 21.14 O
ATOM 20 N1 G A1390 -95.530 38.395 -6.917 1.00 21.14 N
ATOM 21 C2 G A1390 -94.832 37.325 -6.451 1.00 21.14 C
ATOM 22 N2 G A1390 -95.530 36.191 -6.352 1.00 21.14 N
ATOM 23 N3 G A1390 -93.562 37.349 -6.108 1.00 21.14 N
ATOM 24 C4 G A1390 -93.027 38.565 -6.269 1.00 21.14 C
ATOM 25 P U A1391 -87.460 37.820 -9.017 1.00 10.04 P
ATOM 26 OP1 U A1391 -86.178 37.098 -9.238 1.00 10.04 O
ATOM 27 OP2 U A1391 -87.741 39.042 -9.822 1.00 10.04 O
ATOM 28 O5' U A1391 -88.691 36.819 -9.137 1.00 10.04 O
TER
ATOM 1 O3' A B1500 -91.820 35.104 -2.869 1.00 17.15 O
ATOM 2 P A B1501 -90.545 35.663 -2.073 1.00 5.87 P
ATOM 3 OP1 A B1501 -90.963 36.891 -1.344 1.00 5.87 O
ATOM 4 OP2 A B1501 -89.440 35.769 -3.060 1.00 5.87 O
ATOM 5 O5' A B1501 -90.269 34.476 -1.039 1.00 5.87 O
ATOM 6 C5' A B1501 -88.959 34.011 -0.773 1.00 5.87 C
ATOM 7 C4' A B1501 -88.909 33.230 0.511 1.00 5.87 C
ATOM 8 O4' A B1501 -89.061 34.137 1.635 1.00 5.87 O
ATOM 9 C3' A B1501 -89.998 32.192 0.676 1.00 5.87 C
ATOM 10 O3' A B1501 -89.489 31.108 1.445 1.00 5.87 O
ATOM 11 C2' A B1501 -91.052 32.941 1.476 1.00 5.87 C
ATOM 12 O2' A B1501 -91.941 32.134 2.191 1.00 5.87 O
ATOM 13 C1' A B1501 -90.193 33.760 2.402 1.00 5.87 C
ATOM 14 N9 A B1501 -90.859 34.974 2.895 1.00 6.15 N
ATOM 15 C8 A B1501 -91.496 35.983 2.185 1.00 6.15 C
ATOM 16 N7 A B1501 -91.997 36.943 2.935 1.00 6.15 N
ATOM 17 C5 A B1501 -91.681 36.540 4.230 1.00 6.15 C
ATOM 18 C6 A B1501 -91.943 37.099 5.491 1.00 6.15 C
ATOM 19 N6 A B1501 -92.598 38.242 5.720 1.00 6.15 N
ATOM 20 N1 A B1501 -91.492 36.422 6.563 1.00 6.15 N
ATOM 21 C2 A B1501 -90.839 35.267 6.384 1.00 6.15 C
ATOM 22 N3 A B1501 -90.524 34.630 5.262 1.00 6.15 N
ATOM 23 C4 A B1501 -90.983 35.333 4.215 1.00 6.15 C
ATOM 24 P G B1502 -89.471 29.630 0.822 1.00 2.97 P
ATOM 25 OP1 G B1502 -89.525 28.673 1.968 1.00 2.97 O
ATOM 26 OP2 G B1502 -88.334 29.566 -0.132 1.00 2.97 O
ATOM 27 O5' G B1502 -90.841 29.583 0.021 1.00 2.97 O
TER
Atoms:
OP1: (-86.808,43.328,-6.907)
OP2: (-89.228,43.417,-7.745)
C3': (-88.692,38.703,-6.863)
C1': (-90.561,38.246,-5.493)
C5': (-87.964,40.677,-5.450)
O6: (-95.694,40.563,-7.550)
O4': (-89.746,39.179,-4.827)
C8: (-91.675,40.272,-6.342)
C2: (-94.832,37.325,-6.451)
C6: (-95.003,39.645,-7.106)
C5: (-93.655,39.678,-6.737)
C4: (-93.027,38.565,-6.269)
P: (-88.238,42.928,-6.753)
C4': (-88.452,39.267,-5.480)
C2': (-89.718,37.615,-6.598)
O2': (-89.094,36.462,-6.070)
N1: (-95.530,38.395,-6.917)
N2: (-95.530,36.191,-6.352)
N3: (-93.562,37.349,-6.108)
N7: (-92.799,40.742,-6.771)
N9: (-91.731,38.962,-6.021)
O5': (-88.352,41.350,-6.629)
O3': (-87.497,38.235,-7.463)
OP2: (-89.228,43.417,-7.745)
C3': (-88.692,38.703,-6.863)
C1': (-90.561,38.246,-5.493)
C5': (-87.964,40.677,-5.450)
O6: (-95.694,40.563,-7.550)
O4': (-89.746,39.179,-4.827)
C8: (-91.675,40.272,-6.342)
C2: (-94.832,37.325,-6.451)
C6: (-95.003,39.645,-7.106)
C5: (-93.655,39.678,-6.737)
C4: (-93.027,38.565,-6.269)
P: (-88.238,42.928,-6.753)
C4': (-88.452,39.267,-5.480)
C2': (-89.718,37.615,-6.598)
O2': (-89.094,36.462,-6.070)
N1: (-95.530,38.395,-6.917)
N2: (-95.530,36.191,-6.352)
N3: (-93.562,37.349,-6.108)
N7: (-92.799,40.742,-6.771)
N9: (-91.731,38.962,-6.021)
O5': (-88.352,41.350,-6.629)
O3': (-87.497,38.235,-7.463)
OP1: (-90.963,36.891,-1.344)
OP2: (-89.440,35.769,-3.060)
C3': (-89.998,32.192,0.676)
C1': (-90.193,33.760,2.402)
C5': (-88.959,34.011,-0.773)
O4': (-89.061,34.137,1.635)
C8: (-91.496,35.983,2.185)
O2': (-91.941,32.134,2.191)
C6: (-91.943,37.099,5.491)
C5: (-91.681,36.540,4.230)
C4: (-90.983,35.333,4.215)
P: (-90.545,35.663,-2.073)
C4': (-88.909,33.230,0.511)
C2': (-91.052,32.941,1.476)
C2: (-90.839,35.267,6.384)
N1: (-91.492,36.422,6.563)
N3: (-90.524,34.630,5.262)
N6: (-92.598,38.242,5.720)
N7: (-91.997,36.943,2.935)
N9: (-90.859,34.974,2.895)
O5': (-90.269,34.476,-1.039)
O3': (-89.489,31.108,1.445)
OP2: (-89.440,35.769,-3.060)
C3': (-89.998,32.192,0.676)
C1': (-90.193,33.760,2.402)
C5': (-88.959,34.011,-0.773)
O4': (-89.061,34.137,1.635)
C8: (-91.496,35.983,2.185)
O2': (-91.941,32.134,2.191)
C6: (-91.943,37.099,5.491)
C5: (-91.681,36.540,4.230)
C4: (-90.983,35.333,4.215)
P: (-90.545,35.663,-2.073)
C4': (-88.909,33.230,0.511)
C2': (-91.052,32.941,1.476)
C2: (-90.839,35.267,6.384)
N1: (-91.492,36.422,6.563)
N3: (-90.524,34.630,5.262)
N6: (-92.598,38.242,5.720)
N7: (-91.997,36.943,2.935)
N9: (-90.859,34.974,2.895)
O5': (-90.269,34.476,-1.039)
O3': (-89.489,31.108,1.445)
Image (generated by PyMOL):