Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11247:12638
Extra
PDB:
ATOM 1 O3' A A1246 24.714 11.043 28.821 1.00 43.08 O
ATOM 2 P A A1247 26.109 10.511 29.423 1.00 49.15 P
ATOM 3 OP1 A A1247 27.153 10.884 28.468 1.00 49.31 O
ATOM 4 OP2 A A1247 25.946 9.080 29.794 1.00 48.93 O
ATOM 5 O5' A A1247 26.219 11.371 30.710 1.00 48.95 O
ATOM 6 C5' A A1247 25.296 11.146 31.721 1.00 48.80 C
ATOM 7 C4' A A1247 25.498 12.047 32.870 1.00 48.64 C
ATOM 8 O4' A A1247 24.267 12.052 33.603 1.00 48.62 O
ATOM 9 C3' A A1247 26.598 11.629 33.851 1.00 48.26 C
ATOM 10 O3' A A1247 27.279 12.785 34.303 1.00 48.25 O
ATOM 11 C2' A A1247 25.838 11.027 35.024 1.00 48.03 C
ATOM 12 O2' A A1247 26.444 11.281 36.273 1.00 47.76 O
ATOM 13 C1' A A1247 24.503 11.742 34.943 1.00 48.28 C
ATOM 14 N9 A A1247 23.370 10.985 35.437 1.00 48.22 N
ATOM 15 C8 A A1247 23.213 9.781 36.064 1.00 47.98 C
ATOM 16 N7 A A1247 21.948 9.574 36.431 1.00 48.04 N
ATOM 17 C5 A A1247 21.289 10.729 36.016 1.00 48.33 C
ATOM 18 C6 A A1247 19.982 11.187 36.064 1.00 48.55 C
ATOM 19 N6 A A1247 18.961 10.518 36.577 1.00 48.50 N
ATOM 20 N1 A A1247 19.707 12.377 35.546 1.00 48.84 N
ATOM 21 C2 A A1247 20.654 13.103 34.997 1.00 48.92 C
ATOM 22 N3 A A1247 21.910 12.788 34.890 1.00 48.74 N
ATOM 23 C4 A A1247 22.156 11.586 35.414 1.00 48.45 C
ATOM 24 P A A1248 28.880 12.875 34.202 1.00 36.36 P
ATOM 25 OP1 A A1248 29.204 13.320 32.827 1.00 36.67 O
ATOM 26 OP2 A A1248 29.411 11.575 34.706 1.00 36.05 O
ATOM 27 O5' A A1248 29.238 14.061 35.207 1.00 36.28 O
TER
ATOM 1 O3' C B2637 24.918 16.105 32.445 1.00 39.38 O
ATOM 2 P U B2638 24.539 16.853 31.102 1.00 47.94 P
ATOM 3 OP1 U B2638 25.447 16.399 30.061 1.00 48.00 O
ATOM 4 OP2 U B2638 24.487 18.278 31.414 1.00 48.10 O
ATOM 5 O5' U B2638 23.092 16.308 30.833 1.00 48.09 O
ATOM 6 C5' U B2638 22.717 15.025 31.294 1.00 47.84 C
ATOM 7 C4' U B2638 21.233 14.840 31.219 1.00 48.02 C
ATOM 8 O4' U B2638 20.619 15.396 32.424 1.00 47.92 O
ATOM 9 C3' U B2638 20.571 15.530 30.034 1.00 48.48 C
ATOM 10 O3' U B2638 19.566 14.692 29.487 1.00 48.63 O
ATOM 11 C2' U B2638 19.936 16.762 30.675 1.00 48.61 C
ATOM 12 O2' U B2638 18.817 17.294 29.984 1.00 49.01 O
ATOM 13 C1' U B2638 19.571 16.248 32.062 1.00 48.27 C
ATOM 14 N1 U B2638 19.469 17.323 33.047 1.00 48.24 N
ATOM 15 C2 U B2638 18.358 17.449 33.849 1.00 48.25 C
ATOM 16 O2 U B2638 17.483 16.610 33.856 1.00 48.24 O
ATOM 17 N3 U B2638 18.319 18.548 34.663 1.00 48.27 N
ATOM 18 C4 U B2638 19.267 19.532 34.707 1.00 48.29 C
ATOM 19 O4 U B2638 19.146 20.516 35.430 1.00 48.34 O
ATOM 20 C5 U B2638 20.385 19.318 33.851 1.00 48.28 C
ATOM 21 C6 U B2638 20.441 18.260 33.043 1.00 48.26 C
ATOM 22 P A B2639 19.619 14.293 27.940 1.00 53.26 P
ATOM 23 OP1 A B2639 20.948 13.755 27.712 1.00 53.06 O
ATOM 24 OP2 A B2639 19.129 15.504 27.135 1.00 53.70 O
ATOM 25 O5' A B2639 18.540 13.143 27.806 1.00 53.29 O
TER
ATOM 2 P A A1247 26.109 10.511 29.423 1.00 49.15 P
ATOM 3 OP1 A A1247 27.153 10.884 28.468 1.00 49.31 O
ATOM 4 OP2 A A1247 25.946 9.080 29.794 1.00 48.93 O
ATOM 5 O5' A A1247 26.219 11.371 30.710 1.00 48.95 O
ATOM 6 C5' A A1247 25.296 11.146 31.721 1.00 48.80 C
ATOM 7 C4' A A1247 25.498 12.047 32.870 1.00 48.64 C
ATOM 8 O4' A A1247 24.267 12.052 33.603 1.00 48.62 O
ATOM 9 C3' A A1247 26.598 11.629 33.851 1.00 48.26 C
ATOM 10 O3' A A1247 27.279 12.785 34.303 1.00 48.25 O
ATOM 11 C2' A A1247 25.838 11.027 35.024 1.00 48.03 C
ATOM 12 O2' A A1247 26.444 11.281 36.273 1.00 47.76 O
ATOM 13 C1' A A1247 24.503 11.742 34.943 1.00 48.28 C
ATOM 14 N9 A A1247 23.370 10.985 35.437 1.00 48.22 N
ATOM 15 C8 A A1247 23.213 9.781 36.064 1.00 47.98 C
ATOM 16 N7 A A1247 21.948 9.574 36.431 1.00 48.04 N
ATOM 17 C5 A A1247 21.289 10.729 36.016 1.00 48.33 C
ATOM 18 C6 A A1247 19.982 11.187 36.064 1.00 48.55 C
ATOM 19 N6 A A1247 18.961 10.518 36.577 1.00 48.50 N
ATOM 20 N1 A A1247 19.707 12.377 35.546 1.00 48.84 N
ATOM 21 C2 A A1247 20.654 13.103 34.997 1.00 48.92 C
ATOM 22 N3 A A1247 21.910 12.788 34.890 1.00 48.74 N
ATOM 23 C4 A A1247 22.156 11.586 35.414 1.00 48.45 C
ATOM 24 P A A1248 28.880 12.875 34.202 1.00 36.36 P
ATOM 25 OP1 A A1248 29.204 13.320 32.827 1.00 36.67 O
ATOM 26 OP2 A A1248 29.411 11.575 34.706 1.00 36.05 O
ATOM 27 O5' A A1248 29.238 14.061 35.207 1.00 36.28 O
TER
ATOM 1 O3' C B2637 24.918 16.105 32.445 1.00 39.38 O
ATOM 2 P U B2638 24.539 16.853 31.102 1.00 47.94 P
ATOM 3 OP1 U B2638 25.447 16.399 30.061 1.00 48.00 O
ATOM 4 OP2 U B2638 24.487 18.278 31.414 1.00 48.10 O
ATOM 5 O5' U B2638 23.092 16.308 30.833 1.00 48.09 O
ATOM 6 C5' U B2638 22.717 15.025 31.294 1.00 47.84 C
ATOM 7 C4' U B2638 21.233 14.840 31.219 1.00 48.02 C
ATOM 8 O4' U B2638 20.619 15.396 32.424 1.00 47.92 O
ATOM 9 C3' U B2638 20.571 15.530 30.034 1.00 48.48 C
ATOM 10 O3' U B2638 19.566 14.692 29.487 1.00 48.63 O
ATOM 11 C2' U B2638 19.936 16.762 30.675 1.00 48.61 C
ATOM 12 O2' U B2638 18.817 17.294 29.984 1.00 49.01 O
ATOM 13 C1' U B2638 19.571 16.248 32.062 1.00 48.27 C
ATOM 14 N1 U B2638 19.469 17.323 33.047 1.00 48.24 N
ATOM 15 C2 U B2638 18.358 17.449 33.849 1.00 48.25 C
ATOM 16 O2 U B2638 17.483 16.610 33.856 1.00 48.24 O
ATOM 17 N3 U B2638 18.319 18.548 34.663 1.00 48.27 N
ATOM 18 C4 U B2638 19.267 19.532 34.707 1.00 48.29 C
ATOM 19 O4 U B2638 19.146 20.516 35.430 1.00 48.34 O
ATOM 20 C5 U B2638 20.385 19.318 33.851 1.00 48.28 C
ATOM 21 C6 U B2638 20.441 18.260 33.043 1.00 48.26 C
ATOM 22 P A B2639 19.619 14.293 27.940 1.00 53.26 P
ATOM 23 OP1 A B2639 20.948 13.755 27.712 1.00 53.06 O
ATOM 24 OP2 A B2639 19.129 15.504 27.135 1.00 53.70 O
ATOM 25 O5' A B2639 18.540 13.143 27.806 1.00 53.29 O
TER
Atoms:
OP1: (27.153,10.884,28.468)
OP2: (25.946,9.080,29.794)
C3': (26.598,11.629,33.851)
C1': (24.503,11.742,34.943)
C5': (25.296,11.146,31.721)
O4': (24.267,12.052,33.603)
C8: (23.213,9.781,36.064)
O2': (26.444,11.281,36.273)
C6: (19.982,11.187,36.064)
C5: (21.289,10.729,36.016)
C4: (22.156,11.586,35.414)
P: (26.109,10.511,29.423)
C4': (25.498,12.047,32.870)
C2': (25.838,11.027,35.024)
C2: (20.654,13.103,34.997)
N1: (19.707,12.377,35.546)
N3: (21.910,12.788,34.890)
N6: (18.961,10.518,36.577)
N7: (21.948,9.574,36.431)
N9: (23.370,10.985,35.437)
O5': (26.219,11.371,30.710)
O3': (27.279,12.785,34.303)
OP2: (25.946,9.080,29.794)
C3': (26.598,11.629,33.851)
C1': (24.503,11.742,34.943)
C5': (25.296,11.146,31.721)
O4': (24.267,12.052,33.603)
C8: (23.213,9.781,36.064)
O2': (26.444,11.281,36.273)
C6: (19.982,11.187,36.064)
C5: (21.289,10.729,36.016)
C4: (22.156,11.586,35.414)
P: (26.109,10.511,29.423)
C4': (25.498,12.047,32.870)
C2': (25.838,11.027,35.024)
C2: (20.654,13.103,34.997)
N1: (19.707,12.377,35.546)
N3: (21.910,12.788,34.890)
N6: (18.961,10.518,36.577)
N7: (21.948,9.574,36.431)
N9: (23.370,10.985,35.437)
O5': (26.219,11.371,30.710)
O3': (27.279,12.785,34.303)
C4: (19.267,19.532,34.707)
N3: (18.319,18.548,34.663)
OP1: (25.447,16.399,30.061)
OP2: (24.487,18.278,31.414)
C2: (18.358,17.449,33.849)
C1': (19.571,16.248,32.062)
C3': (20.571,15.530,30.034)
O5': (23.092,16.308,30.833)
O4': (20.619,15.396,32.424)
C5': (22.717,15.025,31.294)
P: (24.539,16.853,31.102)
C4': (21.233,14.840,31.219)
C2': (19.936,16.762,30.675)
O2': (18.817,17.294,29.984)
N1: (19.469,17.323,33.047)
O4: (19.146,20.516,35.430)
O2: (17.483,16.610,33.856)
C6: (20.441,18.260,33.043)
C5: (20.385,19.318,33.851)
O3': (19.566,14.692,29.487)
N3: (18.319,18.548,34.663)
OP1: (25.447,16.399,30.061)
OP2: (24.487,18.278,31.414)
C2: (18.358,17.449,33.849)
C1': (19.571,16.248,32.062)
C3': (20.571,15.530,30.034)
O5': (23.092,16.308,30.833)
O4': (20.619,15.396,32.424)
C5': (22.717,15.025,31.294)
P: (24.539,16.853,31.102)
C4': (21.233,14.840,31.219)
C2': (19.936,16.762,30.675)
O2': (18.817,17.294,29.984)
N1: (19.469,17.323,33.047)
O4: (19.146,20.516,35.430)
O2: (17.483,16.610,33.856)
C6: (20.441,18.260,33.043)
C5: (20.385,19.318,33.851)
O3': (19.566,14.692,29.487)
Image (generated by PyMOL):