Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:339:340
Extra
PDB:
ATOM 1 O3' C A 38 -4.922 -87.512 41.134 1.00 82.96 O
ATOM 2 P C A 39 -3.781 -88.538 40.736 1.00 71.36 P
ATOM 3 OP1 C A 39 -4.238 -89.883 41.164 1.00 71.97 O
ATOM 4 OP2 C A 39 -2.500 -88.007 41.292 1.00 70.41 O
ATOM 5 O5' C A 39 -3.780 -88.433 39.137 1.00 72.07 O
ATOM 6 C5' C A 39 -4.855 -88.956 38.372 1.00 73.05 C
ATOM 7 C4' C A 39 -4.807 -88.498 36.941 1.00 73.51 C
ATOM 8 O4' C A 39 -4.800 -87.060 36.896 1.00 72.82 O
ATOM 9 C3' C A 39 -3.586 -88.908 36.138 1.00 73.72 C
ATOM 10 O3' C A 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 11 C2' C A 39 -3.514 -87.842 35.051 1.00 73.71 C
ATOM 12 O2' C A 39 -4.313 -88.219 33.935 1.00 74.72 O
ATOM 13 C1' C A 39 -4.155 -86.623 35.728 1.00 72.98 C
ATOM 14 N1 C A 39 -3.173 -85.578 36.101 1.00 71.97 N
ATOM 15 C2 C A 39 -2.621 -84.651 35.173 1.00 71.82 C
ATOM 16 O2 C A 39 -2.921 -84.732 33.974 1.00 72.55 O
ATOM 17 N3 C A 39 -1.744 -83.691 35.607 1.00 70.87 N
ATOM 18 C4 C A 39 -1.442 -83.640 36.913 1.00 70.11 C
ATOM 19 N4 C A 39 -0.590 -82.725 37.345 1.00 69.21 N
ATOM 20 C5 C A 39 -1.986 -84.539 37.867 1.00 70.23 C
ATOM 21 C6 C A 39 -2.840 -85.476 37.427 1.00 71.16 C
ATOM 22 P G A 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 23 OP1 G A 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 24 OP2 G A 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 25 O5' G A 40 -1.701 -91.687 35.235 1.00 80.17 O
TER
ATOM 1 O3' C B 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 2 P G B 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 3 OP1 G B 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 4 OP2 G B 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 5 O5' G B 40 -1.701 -91.687 35.235 1.00 80.17 O
ATOM 6 C5' G B 40 -0.976 -90.591 34.727 1.00 79.64 C
ATOM 7 C4' G B 40 0.347 -91.015 34.194 1.00 79.73 C
ATOM 8 O4' G B 40 1.003 -91.870 35.161 1.00 79.46 O
ATOM 9 C3' G B 40 0.307 -91.793 32.879 1.00 80.83 C
ATOM 10 O3' G B 40 1.202 -91.189 31.953 1.00 80.74 O
ATOM 11 C2' G B 40 0.817 -93.195 33.256 1.00 81.21 C
ATOM 12 O2' G B 40 1.574 -93.834 32.243 1.00 81.87 O
ATOM 13 C1' G B 40 1.671 -92.902 34.478 1.00 80.16 C
ATOM 14 N9 G B 40 1.858 -94.037 35.391 1.00 80.22 N
ATOM 15 C8 G B 40 1.208 -95.241 35.454 1.00 81.03 C
ATOM 16 N7 G B 40 1.626 -96.027 36.404 1.00 80.83 N
ATOM 17 C5 G B 40 2.631 -95.284 36.995 1.00 79.82 C
ATOM 18 C6 G B 40 3.476 -95.583 38.081 1.00 79.16 C
ATOM 19 O6 G B 40 3.487 -96.621 38.739 1.00 79.38 O
ATOM 20 N1 G B 40 4.369 -94.562 38.401 1.00 78.19 N
ATOM 21 C2 G B 40 4.428 -93.387 37.724 1.00 77.90 C
ATOM 22 N2 G B 40 5.327 -92.518 38.132 1.00 76.97 N
ATOM 23 N3 G B 40 3.647 -93.091 36.707 1.00 78.50 N
ATOM 24 C4 G B 40 2.787 -94.077 36.391 1.00 79.44 C
ATOM 25 P A B 41 0.792 -91.074 30.413 1.00 77.01 P
ATOM 26 OP1 A B 41 -0.614 -91.501 30.327 1.00 77.70 O
ATOM 27 OP2 A B 41 1.859 -91.833 29.609 1.00 77.54 O
ATOM 28 O5' A B 41 0.886 -89.510 30.143 1.00 76.33 O
TER
ATOM 2 P C A 39 -3.781 -88.538 40.736 1.00 71.36 P
ATOM 3 OP1 C A 39 -4.238 -89.883 41.164 1.00 71.97 O
ATOM 4 OP2 C A 39 -2.500 -88.007 41.292 1.00 70.41 O
ATOM 5 O5' C A 39 -3.780 -88.433 39.137 1.00 72.07 O
ATOM 6 C5' C A 39 -4.855 -88.956 38.372 1.00 73.05 C
ATOM 7 C4' C A 39 -4.807 -88.498 36.941 1.00 73.51 C
ATOM 8 O4' C A 39 -4.800 -87.060 36.896 1.00 72.82 O
ATOM 9 C3' C A 39 -3.586 -88.908 36.138 1.00 73.72 C
ATOM 10 O3' C A 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 11 C2' C A 39 -3.514 -87.842 35.051 1.00 73.71 C
ATOM 12 O2' C A 39 -4.313 -88.219 33.935 1.00 74.72 O
ATOM 13 C1' C A 39 -4.155 -86.623 35.728 1.00 72.98 C
ATOM 14 N1 C A 39 -3.173 -85.578 36.101 1.00 71.97 N
ATOM 15 C2 C A 39 -2.621 -84.651 35.173 1.00 71.82 C
ATOM 16 O2 C A 39 -2.921 -84.732 33.974 1.00 72.55 O
ATOM 17 N3 C A 39 -1.744 -83.691 35.607 1.00 70.87 N
ATOM 18 C4 C A 39 -1.442 -83.640 36.913 1.00 70.11 C
ATOM 19 N4 C A 39 -0.590 -82.725 37.345 1.00 69.21 N
ATOM 20 C5 C A 39 -1.986 -84.539 37.867 1.00 70.23 C
ATOM 21 C6 C A 39 -2.840 -85.476 37.427 1.00 71.16 C
ATOM 22 P G A 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 23 OP1 G A 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 24 OP2 G A 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 25 O5' G A 40 -1.701 -91.687 35.235 1.00 80.17 O
TER
ATOM 1 O3' C B 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 2 P G B 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 3 OP1 G B 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 4 OP2 G B 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 5 O5' G B 40 -1.701 -91.687 35.235 1.00 80.17 O
ATOM 6 C5' G B 40 -0.976 -90.591 34.727 1.00 79.64 C
ATOM 7 C4' G B 40 0.347 -91.015 34.194 1.00 79.73 C
ATOM 8 O4' G B 40 1.003 -91.870 35.161 1.00 79.46 O
ATOM 9 C3' G B 40 0.307 -91.793 32.879 1.00 80.83 C
ATOM 10 O3' G B 40 1.202 -91.189 31.953 1.00 80.74 O
ATOM 11 C2' G B 40 0.817 -93.195 33.256 1.00 81.21 C
ATOM 12 O2' G B 40 1.574 -93.834 32.243 1.00 81.87 O
ATOM 13 C1' G B 40 1.671 -92.902 34.478 1.00 80.16 C
ATOM 14 N9 G B 40 1.858 -94.037 35.391 1.00 80.22 N
ATOM 15 C8 G B 40 1.208 -95.241 35.454 1.00 81.03 C
ATOM 16 N7 G B 40 1.626 -96.027 36.404 1.00 80.83 N
ATOM 17 C5 G B 40 2.631 -95.284 36.995 1.00 79.82 C
ATOM 18 C6 G B 40 3.476 -95.583 38.081 1.00 79.16 C
ATOM 19 O6 G B 40 3.487 -96.621 38.739 1.00 79.38 O
ATOM 20 N1 G B 40 4.369 -94.562 38.401 1.00 78.19 N
ATOM 21 C2 G B 40 4.428 -93.387 37.724 1.00 77.90 C
ATOM 22 N2 G B 40 5.327 -92.518 38.132 1.00 76.97 N
ATOM 23 N3 G B 40 3.647 -93.091 36.707 1.00 78.50 N
ATOM 24 C4 G B 40 2.787 -94.077 36.391 1.00 79.44 C
ATOM 25 P A B 41 0.792 -91.074 30.413 1.00 77.01 P
ATOM 26 OP1 A B 41 -0.614 -91.501 30.327 1.00 77.70 O
ATOM 27 OP2 A B 41 1.859 -91.833 29.609 1.00 77.54 O
ATOM 28 O5' A B 41 0.886 -89.510 30.143 1.00 76.33 O
TER
Atoms:
C2: (-2.621,-84.651,35.173)
OP1: (-4.238,-89.883,41.164)
OP2: (-2.500,-88.007,41.292)
C4: (-1.442,-83.640,36.913)
O5': (-3.780,-88.433,39.137)
C3': (-3.586,-88.908,36.138)
C1': (-4.155,-86.623,35.728)
O4': (-4.800,-87.060,36.896)
C5': (-4.855,-88.956,38.372)
P: (-3.781,-88.538,40.736)
O2: (-2.921,-84.732,33.974)
C4': (-4.807,-88.498,36.941)
C2': (-3.514,-87.842,35.051)
O2': (-4.313,-88.219,33.935)
N1: (-3.173,-85.578,36.101)
N3: (-1.744,-83.691,35.607)
N4: (-0.590,-82.725,37.345)
C6: (-2.840,-85.476,37.427)
C5: (-1.986,-84.539,37.867)
O3': (-3.699,-90.219,35.602)
OP1: (-4.238,-89.883,41.164)
OP2: (-2.500,-88.007,41.292)
C4: (-1.442,-83.640,36.913)
O5': (-3.780,-88.433,39.137)
C3': (-3.586,-88.908,36.138)
C1': (-4.155,-86.623,35.728)
O4': (-4.800,-87.060,36.896)
C5': (-4.855,-88.956,38.372)
P: (-3.781,-88.538,40.736)
O2: (-2.921,-84.732,33.974)
C4': (-4.807,-88.498,36.941)
C2': (-3.514,-87.842,35.051)
O2': (-4.313,-88.219,33.935)
N1: (-3.173,-85.578,36.101)
N3: (-1.744,-83.691,35.607)
N4: (-0.590,-82.725,37.345)
C6: (-2.840,-85.476,37.427)
C5: (-1.986,-84.539,37.867)
O3': (-3.699,-90.219,35.602)
OP1: (-3.808,-92.638,36.238)
OP2: (-2.347,-90.993,37.563)
C3': (0.307,-91.793,32.879)
C1': (1.671,-92.902,34.478)
C5': (-0.976,-90.591,34.727)
O6: (3.487,-96.621,38.739)
O4': (1.003,-91.870,35.161)
C8: (1.208,-95.241,35.454)
C2: (4.428,-93.387,37.724)
C6: (3.476,-95.583,38.081)
C5: (2.631,-95.284,36.995)
C4: (2.787,-94.077,36.391)
P: (-2.891,-91.456,36.257)
C4': (0.347,-91.015,34.194)
C2': (0.817,-93.195,33.256)
O2': (1.574,-93.834,32.243)
N1: (4.369,-94.562,38.401)
N2: (5.327,-92.518,38.132)
N3: (3.647,-93.091,36.707)
N7: (1.626,-96.027,36.404)
N9: (1.858,-94.037,35.391)
O5': (-1.701,-91.687,35.235)
O3': (1.202,-91.189,31.953)
OP2: (-2.347,-90.993,37.563)
C3': (0.307,-91.793,32.879)
C1': (1.671,-92.902,34.478)
C5': (-0.976,-90.591,34.727)
O6: (3.487,-96.621,38.739)
O4': (1.003,-91.870,35.161)
C8: (1.208,-95.241,35.454)
C2: (4.428,-93.387,37.724)
C6: (3.476,-95.583,38.081)
C5: (2.631,-95.284,36.995)
C4: (2.787,-94.077,36.391)
P: (-2.891,-91.456,36.257)
C4': (0.347,-91.015,34.194)
C2': (0.817,-93.195,33.256)
O2': (1.574,-93.834,32.243)
N1: (4.369,-94.562,38.401)
N2: (5.327,-92.518,38.132)
N3: (3.647,-93.091,36.707)
N7: (1.626,-96.027,36.404)
N9: (1.858,-94.037,35.391)
O5': (-1.701,-91.687,35.235)
O3': (1.202,-91.189,31.953)
Image (generated by PyMOL):