Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12048:12049
Extra
PDB:
ATOM 1 O3' G A2047 -15.275 -22.597 100.240 1.00 57.84 O
ATOM 2 P U A2048 -15.498 -21.703 98.942 1.00 49.17 P
ATOM 3 OP1 U A2048 -16.665 -20.854 99.233 1.00 49.46 O
ATOM 4 OP2 U A2048 -15.534 -22.608 97.761 1.00 49.04 O
ATOM 5 O5' U A2048 -14.211 -20.799 98.912 1.00 48.82 O
ATOM 6 C5' U A2048 -14.004 -19.814 99.913 1.00 48.90 C
ATOM 7 C4' U A2048 -12.649 -19.202 99.778 1.00 48.55 C
ATOM 8 O4' U A2048 -11.656 -20.246 99.870 1.00 48.39 O
ATOM 9 C3' U A2048 -12.371 -18.539 98.449 1.00 48.24 C
ATOM 10 O3' U A2048 -12.843 -17.198 98.414 1.00 48.31 O
ATOM 11 C2' U A2048 -10.852 -18.665 98.324 1.00 47.89 C
ATOM 12 O2' U A2048 -10.212 -17.686 99.105 1.00 47.86 O
ATOM 13 C1' U A2048 -10.593 -19.994 98.993 1.00 48.00 C
ATOM 14 N1 U A2048 -10.494 -21.100 98.042 1.00 47.87 N
ATOM 15 C2 U A2048 -9.245 -21.329 97.568 1.00 47.54 C
ATOM 16 O2 U A2048 -8.336 -20.640 97.880 1.00 47.37 O
ATOM 17 N3 U A2048 -9.091 -22.364 96.717 1.00 47.43 N
ATOM 18 C4 U A2048 -10.104 -23.188 96.302 1.00 47.63 C
ATOM 19 O4 U A2048 -9.809 -24.074 95.516 1.00 47.50 O
ATOM 20 C5 U A2048 -11.399 -22.925 96.841 1.00 47.97 C
ATOM 21 C6 U A2048 -11.545 -21.915 97.697 1.00 48.08 C
ATOM 22 P A A2049 -13.216 -16.487 97.025 1.00 53.54 P
ATOM 23 OP1 A A2049 -13.877 -15.215 97.360 1.00 53.73 O
ATOM 24 OP2 A A2049 -13.944 -17.495 96.223 1.00 53.61 O
ATOM 25 O5' A A2049 -11.798 -16.173 96.361 1.00 53.11 O
TER
ATOM 1 O3' U B2048 -12.843 -17.198 98.414 1.00 48.31 O
ATOM 2 P A B2049 -13.216 -16.487 97.025 1.00 53.54 P
ATOM 3 OP1 A B2049 -13.877 -15.215 97.360 1.00 53.73 O
ATOM 4 OP2 A B2049 -13.944 -17.495 96.223 1.00 53.61 O
ATOM 5 O5' A B2049 -11.798 -16.173 96.361 1.00 53.11 O
ATOM 6 C5' A B2049 -10.992 -15.112 96.846 1.00 53.00 C
ATOM 7 C4' A B2049 -10.342 -14.352 95.721 1.00 52.67 C
ATOM 8 O4' A B2049 -9.860 -15.290 94.723 1.00 52.43 O
ATOM 9 C3' A B2049 -11.235 -13.382 94.961 1.00 52.76 C
ATOM 10 O3' A B2049 -11.215 -12.092 95.543 1.00 52.84 O
ATOM 11 C2' A B2049 -10.655 -13.421 93.552 1.00 52.43 C
ATOM 12 O2' A B2049 -9.505 -12.613 93.477 1.00 52.17 O
ATOM 13 C1' A B2049 -10.197 -14.862 93.434 1.00 52.32 C
ATOM 14 N9 A B2049 -11.240 -15.767 92.930 1.00 52.49 N
ATOM 15 C8 A B2049 -12.604 -15.771 93.153 1.00 52.83 C
ATOM 16 N7 A B2049 -13.258 -16.802 92.620 1.00 52.93 N
ATOM 17 C5 A B2049 -12.244 -17.555 92.023 1.00 52.64 C
ATOM 18 C6 A B2049 -12.286 -18.764 91.304 1.00 52.60 C
ATOM 19 N6 A B2049 -13.382 -19.463 91.037 1.00 52.85 N
ATOM 20 N1 A B2049 -11.129 -19.240 90.859 1.00 52.31 N
ATOM 21 C2 A B2049 -10.034 -18.515 91.171 1.00 52.08 C
ATOM 22 N3 A B2049 -9.821 -17.369 91.832 1.00 52.08 N
ATOM 23 C4 A B2049 -11.006 -16.932 92.239 1.00 52.38 C
ATOM 24 P A B2050 -12.372 -10.991 95.254 1.00 43.34 P
ATOM 25 OP1 A B2050 -13.441 -11.169 96.276 1.00 43.74 O
ATOM 26 OP2 A B2050 -12.745 -11.057 93.817 1.00 43.22 O
ATOM 27 O5' A B2050 -11.604 -9.633 95.508 1.00 43.23 O
TER
ATOM 2 P U A2048 -15.498 -21.703 98.942 1.00 49.17 P
ATOM 3 OP1 U A2048 -16.665 -20.854 99.233 1.00 49.46 O
ATOM 4 OP2 U A2048 -15.534 -22.608 97.761 1.00 49.04 O
ATOM 5 O5' U A2048 -14.211 -20.799 98.912 1.00 48.82 O
ATOM 6 C5' U A2048 -14.004 -19.814 99.913 1.00 48.90 C
ATOM 7 C4' U A2048 -12.649 -19.202 99.778 1.00 48.55 C
ATOM 8 O4' U A2048 -11.656 -20.246 99.870 1.00 48.39 O
ATOM 9 C3' U A2048 -12.371 -18.539 98.449 1.00 48.24 C
ATOM 10 O3' U A2048 -12.843 -17.198 98.414 1.00 48.31 O
ATOM 11 C2' U A2048 -10.852 -18.665 98.324 1.00 47.89 C
ATOM 12 O2' U A2048 -10.212 -17.686 99.105 1.00 47.86 O
ATOM 13 C1' U A2048 -10.593 -19.994 98.993 1.00 48.00 C
ATOM 14 N1 U A2048 -10.494 -21.100 98.042 1.00 47.87 N
ATOM 15 C2 U A2048 -9.245 -21.329 97.568 1.00 47.54 C
ATOM 16 O2 U A2048 -8.336 -20.640 97.880 1.00 47.37 O
ATOM 17 N3 U A2048 -9.091 -22.364 96.717 1.00 47.43 N
ATOM 18 C4 U A2048 -10.104 -23.188 96.302 1.00 47.63 C
ATOM 19 O4 U A2048 -9.809 -24.074 95.516 1.00 47.50 O
ATOM 20 C5 U A2048 -11.399 -22.925 96.841 1.00 47.97 C
ATOM 21 C6 U A2048 -11.545 -21.915 97.697 1.00 48.08 C
ATOM 22 P A A2049 -13.216 -16.487 97.025 1.00 53.54 P
ATOM 23 OP1 A A2049 -13.877 -15.215 97.360 1.00 53.73 O
ATOM 24 OP2 A A2049 -13.944 -17.495 96.223 1.00 53.61 O
ATOM 25 O5' A A2049 -11.798 -16.173 96.361 1.00 53.11 O
TER
ATOM 1 O3' U B2048 -12.843 -17.198 98.414 1.00 48.31 O
ATOM 2 P A B2049 -13.216 -16.487 97.025 1.00 53.54 P
ATOM 3 OP1 A B2049 -13.877 -15.215 97.360 1.00 53.73 O
ATOM 4 OP2 A B2049 -13.944 -17.495 96.223 1.00 53.61 O
ATOM 5 O5' A B2049 -11.798 -16.173 96.361 1.00 53.11 O
ATOM 6 C5' A B2049 -10.992 -15.112 96.846 1.00 53.00 C
ATOM 7 C4' A B2049 -10.342 -14.352 95.721 1.00 52.67 C
ATOM 8 O4' A B2049 -9.860 -15.290 94.723 1.00 52.43 O
ATOM 9 C3' A B2049 -11.235 -13.382 94.961 1.00 52.76 C
ATOM 10 O3' A B2049 -11.215 -12.092 95.543 1.00 52.84 O
ATOM 11 C2' A B2049 -10.655 -13.421 93.552 1.00 52.43 C
ATOM 12 O2' A B2049 -9.505 -12.613 93.477 1.00 52.17 O
ATOM 13 C1' A B2049 -10.197 -14.862 93.434 1.00 52.32 C
ATOM 14 N9 A B2049 -11.240 -15.767 92.930 1.00 52.49 N
ATOM 15 C8 A B2049 -12.604 -15.771 93.153 1.00 52.83 C
ATOM 16 N7 A B2049 -13.258 -16.802 92.620 1.00 52.93 N
ATOM 17 C5 A B2049 -12.244 -17.555 92.023 1.00 52.64 C
ATOM 18 C6 A B2049 -12.286 -18.764 91.304 1.00 52.60 C
ATOM 19 N6 A B2049 -13.382 -19.463 91.037 1.00 52.85 N
ATOM 20 N1 A B2049 -11.129 -19.240 90.859 1.00 52.31 N
ATOM 21 C2 A B2049 -10.034 -18.515 91.171 1.00 52.08 C
ATOM 22 N3 A B2049 -9.821 -17.369 91.832 1.00 52.08 N
ATOM 23 C4 A B2049 -11.006 -16.932 92.239 1.00 52.38 C
ATOM 24 P A B2050 -12.372 -10.991 95.254 1.00 43.34 P
ATOM 25 OP1 A B2050 -13.441 -11.169 96.276 1.00 43.74 O
ATOM 26 OP2 A B2050 -12.745 -11.057 93.817 1.00 43.22 O
ATOM 27 O5' A B2050 -11.604 -9.633 95.508 1.00 43.23 O
TER
Atoms:
C4: (-10.104,-23.188,96.302)
N3: (-9.091,-22.364,96.717)
OP1: (-16.665,-20.854,99.233)
OP2: (-15.534,-22.608,97.761)
C2: (-9.245,-21.329,97.568)
C1': (-10.593,-19.994,98.993)
C3': (-12.371,-18.539,98.449)
O5': (-14.211,-20.799,98.912)
O4': (-11.656,-20.246,99.870)
C5': (-14.004,-19.814,99.913)
P: (-15.498,-21.703,98.942)
C4': (-12.649,-19.202,99.778)
C2': (-10.852,-18.665,98.324)
O2': (-10.212,-17.686,99.105)
N1: (-10.494,-21.100,98.042)
O4: (-9.809,-24.074,95.516)
O2: (-8.336,-20.640,97.880)
C6: (-11.545,-21.915,97.697)
C5: (-11.399,-22.925,96.841)
O3': (-12.843,-17.198,98.414)
N3: (-9.091,-22.364,96.717)
OP1: (-16.665,-20.854,99.233)
OP2: (-15.534,-22.608,97.761)
C2: (-9.245,-21.329,97.568)
C1': (-10.593,-19.994,98.993)
C3': (-12.371,-18.539,98.449)
O5': (-14.211,-20.799,98.912)
O4': (-11.656,-20.246,99.870)
C5': (-14.004,-19.814,99.913)
P: (-15.498,-21.703,98.942)
C4': (-12.649,-19.202,99.778)
C2': (-10.852,-18.665,98.324)
O2': (-10.212,-17.686,99.105)
N1: (-10.494,-21.100,98.042)
O4: (-9.809,-24.074,95.516)
O2: (-8.336,-20.640,97.880)
C6: (-11.545,-21.915,97.697)
C5: (-11.399,-22.925,96.841)
O3': (-12.843,-17.198,98.414)
OP1: (-13.877,-15.215,97.360)
OP2: (-13.944,-17.495,96.223)
C3': (-11.235,-13.382,94.961)
C1': (-10.197,-14.862,93.434)
C5': (-10.992,-15.112,96.846)
O4': (-9.860,-15.290,94.723)
C8: (-12.604,-15.771,93.153)
O2': (-9.505,-12.613,93.477)
C6: (-12.286,-18.764,91.304)
C5: (-12.244,-17.555,92.023)
C4: (-11.006,-16.932,92.239)
P: (-13.216,-16.487,97.025)
C4': (-10.342,-14.352,95.721)
C2': (-10.655,-13.421,93.552)
C2: (-10.034,-18.515,91.171)
N1: (-11.129,-19.240,90.859)
N3: (-9.821,-17.369,91.832)
N6: (-13.382,-19.463,91.037)
N7: (-13.258,-16.802,92.620)
N9: (-11.240,-15.767,92.930)
O5': (-11.798,-16.173,96.361)
O3': (-11.215,-12.092,95.543)
OP2: (-13.944,-17.495,96.223)
C3': (-11.235,-13.382,94.961)
C1': (-10.197,-14.862,93.434)
C5': (-10.992,-15.112,96.846)
O4': (-9.860,-15.290,94.723)
C8: (-12.604,-15.771,93.153)
O2': (-9.505,-12.613,93.477)
C6: (-12.286,-18.764,91.304)
C5: (-12.244,-17.555,92.023)
C4: (-11.006,-16.932,92.239)
P: (-13.216,-16.487,97.025)
C4': (-10.342,-14.352,95.721)
C2': (-10.655,-13.421,93.552)
C2: (-10.034,-18.515,91.171)
N1: (-11.129,-19.240,90.859)
N3: (-9.821,-17.369,91.832)
N6: (-13.382,-19.463,91.037)
N7: (-13.258,-16.802,92.620)
N9: (-11.240,-15.767,92.930)
O5': (-11.798,-16.173,96.361)
O3': (-11.215,-12.092,95.543)
Image (generated by PyMOL):