Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A475:A500
Extra
PDB:
ATOM 1 O3' A A 474 21.450 163.730 51.477 1.00 53.66 O
ATOM 2 P G A 475 22.158 164.043 52.890 1.00 55.21 P
ATOM 3 OP1 G A 475 21.729 163.015 53.878 1.00 54.53 O
ATOM 4 OP2 G A 475 21.990 165.471 53.212 1.00 55.37 O
ATOM 5 O5' G A 475 23.699 163.802 52.601 1.00 54.86 O
ATOM 6 C5' G A 475 24.245 162.501 52.806 1.00 55.42 C
ATOM 7 C4' G A 475 24.728 162.373 54.232 1.00 55.72 C
ATOM 8 O4' G A 475 25.204 161.019 54.442 1.00 54.87 O
ATOM 9 C3' G A 475 25.924 163.276 54.526 1.00 54.82 C
ATOM 10 O3' G A 475 26.066 163.547 55.924 1.00 53.64 O
ATOM 11 C2' G A 475 27.076 162.379 54.143 1.00 54.33 C
ATOM 12 O2' G A 475 28.256 162.864 54.736 1.00 56.40 O
ATOM 13 C1' G A 475 26.573 161.064 54.737 1.00 54.08 C
ATOM 14 N9 G A 475 27.190 159.821 54.303 1.00 52.55 N
ATOM 15 C8 G A 475 27.848 159.583 53.127 1.00 52.29 C
ATOM 16 N7 G A 475 28.416 158.411 53.091 1.00 52.66 N
ATOM 17 C5 G A 475 28.080 157.829 54.305 1.00 52.18 C
ATOM 18 C6 G A 475 28.441 156.575 54.850 1.00 52.27 C
ATOM 19 O6 G A 475 29.170 155.709 54.363 1.00 52.39 O
ATOM 20 N1 G A 475 27.879 156.380 56.104 1.00 51.63 N
ATOM 21 C2 G A 475 27.086 157.282 56.759 1.00 51.88 C
ATOM 22 N2 G A 475 26.649 156.911 57.980 1.00 51.22 N
ATOM 23 N3 G A 475 26.749 158.465 56.262 1.00 51.88 N
ATOM 24 C4 G A 475 27.286 158.670 55.043 1.00 51.74 C
ATOM 25 P U A 476 26.679 164.948 56.412 1.00 52.79 P
ATOM 26 OP1 U A 476 26.998 165.739 55.201 1.00 52.26 O
ATOM 27 OP2 U A 476 27.735 164.755 57.444 1.00 53.93 O
ATOM 28 O5' U A 476 25.420 165.590 57.142 1.00 53.38 O
TER
ATOM 1 O3' A B 499 23.664 152.115 62.602 1.00 57.28 O
ATOM 2 P G B 500 23.853 153.465 63.442 1.00 55.81 P
ATOM 3 OP1 G B 500 24.997 153.239 64.352 1.00 56.82 O
ATOM 4 OP2 G B 500 22.534 153.861 64.009 1.00 55.23 O
ATOM 5 O5' G B 500 24.282 154.543 62.353 1.00 54.07 O
ATOM 6 C5' G B 500 25.488 154.390 61.609 1.00 54.59 C
ATOM 7 C4' G B 500 26.231 155.692 61.569 1.00 56.39 C
ATOM 8 O4' G B 500 25.420 156.675 60.882 1.00 57.59 O
ATOM 9 C3' G B 500 26.562 156.298 62.926 1.00 58.03 C
ATOM 10 O3' G B 500 27.772 157.007 62.794 1.00 59.90 O
ATOM 11 C2' G B 500 25.444 157.304 63.138 1.00 58.22 C
ATOM 12 O2' G B 500 25.824 158.380 63.974 1.00 57.35 O
ATOM 13 C1' G B 500 25.250 157.803 61.714 1.00 59.08 C
ATOM 14 N9 G B 500 23.947 158.397 61.443 1.00 59.74 N
ATOM 15 C8 G B 500 22.857 158.465 62.280 1.00 59.62 C
ATOM 16 N7 G B 500 21.857 159.119 61.757 1.00 60.71 N
ATOM 17 C5 G B 500 22.309 159.488 60.496 1.00 60.15 C
ATOM 18 C6 G B 500 21.669 160.230 59.463 1.00 59.83 C
ATOM 19 O6 G B 500 20.535 160.721 59.452 1.00 60.18 O
ATOM 20 N1 G B 500 22.497 160.384 58.357 1.00 59.74 N
ATOM 21 C2 G B 500 23.777 159.902 58.257 1.00 60.04 C
ATOM 22 N2 G B 500 24.440 160.199 57.128 1.00 60.96 N
ATOM 23 N3 G B 500 24.375 159.196 59.199 1.00 59.90 N
ATOM 24 C4 G B 500 23.591 159.037 60.285 1.00 59.51 C
ATOM 25 P A B 501 28.948 156.758 63.846 1.00 61.89 P
ATOM 26 OP1 A B 501 28.488 155.716 64.805 1.00 58.66 O
ATOM 27 OP2 A B 501 29.383 158.080 64.344 1.00 62.17 O
ATOM 28 O5' A B 501 30.122 156.154 62.965 1.00 61.01 O
TER
ATOM 2 P G A 475 22.158 164.043 52.890 1.00 55.21 P
ATOM 3 OP1 G A 475 21.729 163.015 53.878 1.00 54.53 O
ATOM 4 OP2 G A 475 21.990 165.471 53.212 1.00 55.37 O
ATOM 5 O5' G A 475 23.699 163.802 52.601 1.00 54.86 O
ATOM 6 C5' G A 475 24.245 162.501 52.806 1.00 55.42 C
ATOM 7 C4' G A 475 24.728 162.373 54.232 1.00 55.72 C
ATOM 8 O4' G A 475 25.204 161.019 54.442 1.00 54.87 O
ATOM 9 C3' G A 475 25.924 163.276 54.526 1.00 54.82 C
ATOM 10 O3' G A 475 26.066 163.547 55.924 1.00 53.64 O
ATOM 11 C2' G A 475 27.076 162.379 54.143 1.00 54.33 C
ATOM 12 O2' G A 475 28.256 162.864 54.736 1.00 56.40 O
ATOM 13 C1' G A 475 26.573 161.064 54.737 1.00 54.08 C
ATOM 14 N9 G A 475 27.190 159.821 54.303 1.00 52.55 N
ATOM 15 C8 G A 475 27.848 159.583 53.127 1.00 52.29 C
ATOM 16 N7 G A 475 28.416 158.411 53.091 1.00 52.66 N
ATOM 17 C5 G A 475 28.080 157.829 54.305 1.00 52.18 C
ATOM 18 C6 G A 475 28.441 156.575 54.850 1.00 52.27 C
ATOM 19 O6 G A 475 29.170 155.709 54.363 1.00 52.39 O
ATOM 20 N1 G A 475 27.879 156.380 56.104 1.00 51.63 N
ATOM 21 C2 G A 475 27.086 157.282 56.759 1.00 51.88 C
ATOM 22 N2 G A 475 26.649 156.911 57.980 1.00 51.22 N
ATOM 23 N3 G A 475 26.749 158.465 56.262 1.00 51.88 N
ATOM 24 C4 G A 475 27.286 158.670 55.043 1.00 51.74 C
ATOM 25 P U A 476 26.679 164.948 56.412 1.00 52.79 P
ATOM 26 OP1 U A 476 26.998 165.739 55.201 1.00 52.26 O
ATOM 27 OP2 U A 476 27.735 164.755 57.444 1.00 53.93 O
ATOM 28 O5' U A 476 25.420 165.590 57.142 1.00 53.38 O
TER
ATOM 1 O3' A B 499 23.664 152.115 62.602 1.00 57.28 O
ATOM 2 P G B 500 23.853 153.465 63.442 1.00 55.81 P
ATOM 3 OP1 G B 500 24.997 153.239 64.352 1.00 56.82 O
ATOM 4 OP2 G B 500 22.534 153.861 64.009 1.00 55.23 O
ATOM 5 O5' G B 500 24.282 154.543 62.353 1.00 54.07 O
ATOM 6 C5' G B 500 25.488 154.390 61.609 1.00 54.59 C
ATOM 7 C4' G B 500 26.231 155.692 61.569 1.00 56.39 C
ATOM 8 O4' G B 500 25.420 156.675 60.882 1.00 57.59 O
ATOM 9 C3' G B 500 26.562 156.298 62.926 1.00 58.03 C
ATOM 10 O3' G B 500 27.772 157.007 62.794 1.00 59.90 O
ATOM 11 C2' G B 500 25.444 157.304 63.138 1.00 58.22 C
ATOM 12 O2' G B 500 25.824 158.380 63.974 1.00 57.35 O
ATOM 13 C1' G B 500 25.250 157.803 61.714 1.00 59.08 C
ATOM 14 N9 G B 500 23.947 158.397 61.443 1.00 59.74 N
ATOM 15 C8 G B 500 22.857 158.465 62.280 1.00 59.62 C
ATOM 16 N7 G B 500 21.857 159.119 61.757 1.00 60.71 N
ATOM 17 C5 G B 500 22.309 159.488 60.496 1.00 60.15 C
ATOM 18 C6 G B 500 21.669 160.230 59.463 1.00 59.83 C
ATOM 19 O6 G B 500 20.535 160.721 59.452 1.00 60.18 O
ATOM 20 N1 G B 500 22.497 160.384 58.357 1.00 59.74 N
ATOM 21 C2 G B 500 23.777 159.902 58.257 1.00 60.04 C
ATOM 22 N2 G B 500 24.440 160.199 57.128 1.00 60.96 N
ATOM 23 N3 G B 500 24.375 159.196 59.199 1.00 59.90 N
ATOM 24 C4 G B 500 23.591 159.037 60.285 1.00 59.51 C
ATOM 25 P A B 501 28.948 156.758 63.846 1.00 61.89 P
ATOM 26 OP1 A B 501 28.488 155.716 64.805 1.00 58.66 O
ATOM 27 OP2 A B 501 29.383 158.080 64.344 1.00 62.17 O
ATOM 28 O5' A B 501 30.122 156.154 62.965 1.00 61.01 O
TER
Atoms:
OP1: (21.729,163.015,53.878)
OP2: (21.990,165.471,53.212)
C3': (25.924,163.276,54.526)
C1': (26.573,161.064,54.737)
C5': (24.245,162.501,52.806)
O6: (29.170,155.709,54.363)
O4': (25.204,161.019,54.442)
C8: (27.848,159.583,53.127)
C2: (27.086,157.282,56.759)
C6: (28.441,156.575,54.850)
C5: (28.080,157.829,54.305)
C4: (27.286,158.670,55.043)
P: (22.158,164.043,52.890)
C4': (24.728,162.373,54.232)
C2': (27.076,162.379,54.143)
O2': (28.256,162.864,54.736)
N1: (27.879,156.380,56.104)
N2: (26.649,156.911,57.980)
N3: (26.749,158.465,56.262)
N7: (28.416,158.411,53.091)
N9: (27.190,159.821,54.303)
O5': (23.699,163.802,52.601)
O3': (26.066,163.547,55.924)
OP2: (21.990,165.471,53.212)
C3': (25.924,163.276,54.526)
C1': (26.573,161.064,54.737)
C5': (24.245,162.501,52.806)
O6: (29.170,155.709,54.363)
O4': (25.204,161.019,54.442)
C8: (27.848,159.583,53.127)
C2: (27.086,157.282,56.759)
C6: (28.441,156.575,54.850)
C5: (28.080,157.829,54.305)
C4: (27.286,158.670,55.043)
P: (22.158,164.043,52.890)
C4': (24.728,162.373,54.232)
C2': (27.076,162.379,54.143)
O2': (28.256,162.864,54.736)
N1: (27.879,156.380,56.104)
N2: (26.649,156.911,57.980)
N3: (26.749,158.465,56.262)
N7: (28.416,158.411,53.091)
N9: (27.190,159.821,54.303)
O5': (23.699,163.802,52.601)
O3': (26.066,163.547,55.924)
OP1: (24.997,153.239,64.352)
OP2: (22.534,153.861,64.009)
C3': (26.562,156.298,62.926)
C1': (25.250,157.803,61.714)
C5': (25.488,154.390,61.609)
O6: (20.535,160.721,59.452)
O4': (25.420,156.675,60.882)
C8: (22.857,158.465,62.280)
C2: (23.777,159.902,58.257)
C6: (21.669,160.230,59.463)
C5: (22.309,159.488,60.496)
C4: (23.591,159.037,60.285)
P: (23.853,153.465,63.442)
C4': (26.231,155.692,61.569)
C2': (25.444,157.304,63.138)
O2': (25.824,158.380,63.974)
N1: (22.497,160.384,58.357)
N2: (24.440,160.199,57.128)
N3: (24.375,159.196,59.199)
N7: (21.857,159.119,61.757)
N9: (23.947,158.397,61.443)
O5': (24.282,154.543,62.353)
O3': (27.772,157.007,62.794)
OP2: (22.534,153.861,64.009)
C3': (26.562,156.298,62.926)
C1': (25.250,157.803,61.714)
C5': (25.488,154.390,61.609)
O6: (20.535,160.721,59.452)
O4': (25.420,156.675,60.882)
C8: (22.857,158.465,62.280)
C2: (23.777,159.902,58.257)
C6: (21.669,160.230,59.463)
C5: (22.309,159.488,60.496)
C4: (23.591,159.037,60.285)
P: (23.853,153.465,63.442)
C4': (26.231,155.692,61.569)
C2': (25.444,157.304,63.138)
O2': (25.824,158.380,63.974)
N1: (22.497,160.384,58.357)
N2: (24.440,160.199,57.128)
N3: (24.375,159.196,59.199)
N7: (21.857,159.119,61.757)
N9: (23.947,158.397,61.443)
O5': (24.282,154.543,62.353)
O3': (27.772,157.007,62.794)
Image (generated by PyMOL):