Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YVP:E3:E4
Extra
PDB:
ATOM 1 P G A 3 29.541 77.666 -7.679 1.00 42.11 P
ATOM 2 OP1 G A 3 29.768 78.285 -6.360 1.00 44.79 O
ATOM 3 OP2 G A 3 30.149 76.342 -7.981 1.00 43.33 O
ATOM 4 O5' G A 3 27.963 77.575 -7.871 1.00 35.39 O
ATOM 5 C5' G A 3 27.314 76.318 -8.061 1.00 35.67 C
ATOM 6 C4' G A 3 25.822 76.517 -8.216 1.00 34.51 C
ATOM 7 O4' G A 3 25.548 77.404 -9.338 1.00 36.80 O
ATOM 8 C3' G A 3 25.017 75.277 -8.547 1.00 34.55 C
ATOM 9 O3' G A 3 24.769 74.488 -7.390 1.00 33.53 O
ATOM 10 C2' G A 3 23.742 75.892 -9.116 1.00 36.78 C
ATOM 11 O2' G A 3 22.908 76.444 -8.119 1.00 39.81 O
ATOM 12 C1' G A 3 24.317 77.036 -9.950 1.00 35.98 C
ATOM 13 N9 G A 3 24.580 76.629 -11.328 1.00 34.72 N
ATOM 14 C8 G A 3 25.807 76.477 -11.930 1.00 34.17 C
ATOM 15 N7 G A 3 25.724 76.081 -13.173 1.00 33.76 N
ATOM 16 C5 G A 3 24.360 75.969 -13.410 1.00 33.26 C
ATOM 17 C6 G A 3 23.654 75.577 -14.587 1.00 35.38 C
ATOM 18 O6 G A 3 24.112 75.246 -15.693 1.00 32.94 O
ATOM 19 N1 G A 3 22.276 75.595 -14.386 1.00 36.77 N
ATOM 20 C2 G A 3 21.655 75.948 -13.213 1.00 36.98 C
ATOM 21 N2 G A 3 20.318 75.897 -13.219 1.00 37.71 N
ATOM 22 N3 G A 3 22.298 76.321 -12.114 1.00 36.43 N
ATOM 23 C4 G A 3 23.638 76.306 -12.283 1.00 34.03 C
ATOM 24 P G A 4 24.793 72.884 -7.505 1.00 35.39 P
ATOM 25 OP1 G A 4 24.692 72.323 -6.134 1.00 37.70 O
ATOM 26 OP2 G A 4 25.931 72.501 -8.379 1.00 35.36 O
ATOM 27 O5' G A 4 23.448 72.513 -8.269 1.00 36.43 O
TER
ATOM 1 O3' G B 3 24.769 74.488 -7.390 1.00 33.53 O
ATOM 2 P G B 4 24.793 72.884 -7.505 1.00 35.39 P
ATOM 3 OP1 G B 4 24.692 72.323 -6.134 1.00 37.70 O
ATOM 4 OP2 G B 4 25.931 72.501 -8.379 1.00 35.36 O
ATOM 5 O5' G B 4 23.448 72.513 -8.269 1.00 36.43 O
ATOM 6 C5' G B 4 22.182 72.925 -7.761 1.00 37.22 C
ATOM 7 C4' G B 4 21.115 72.733 -8.810 1.00 36.77 C
ATOM 8 O4' G B 4 21.402 73.593 -9.943 1.00 38.89 O
ATOM 9 C3' G B 4 21.039 71.339 -9.409 1.00 37.42 C
ATOM 10 O3' G B 4 20.223 70.491 -8.613 1.00 38.54 O
ATOM 11 C2' G B 4 20.388 71.603 -10.758 1.00 37.91 C
ATOM 12 O2' G B 4 18.989 71.745 -10.644 1.00 38.04 O
ATOM 13 C1' G B 4 21.018 72.942 -11.142 1.00 37.12 C
ATOM 14 N9 G B 4 22.200 72.776 -11.977 1.00 36.20 N
ATOM 15 C8 G B 4 23.516 72.914 -11.604 1.00 36.41 C
ATOM 16 N7 G B 4 24.351 72.690 -12.583 1.00 38.45 N
ATOM 17 C5 G B 4 23.536 72.390 -13.667 1.00 36.43 C
ATOM 18 C6 G B 4 23.868 72.065 -15.015 1.00 36.38 C
ATOM 19 O6 G B 4 24.986 71.988 -15.538 1.00 36.21 O
ATOM 20 N1 G B 4 22.729 71.824 -15.777 1.00 35.27 N
ATOM 21 C2 G B 4 21.438 71.896 -15.314 1.00 35.91 C
ATOM 22 N2 G B 4 20.474 71.621 -16.200 1.00 34.30 N
ATOM 23 N3 G B 4 21.116 72.212 -14.070 1.00 36.86 N
ATOM 24 C4 G B 4 22.206 72.441 -13.307 1.00 37.86 C
ATOM 25 P U B 5 20.378 68.898 -8.729 1.00 42.88 P
ATOM 26 OP1 U B 5 19.537 68.280 -7.676 1.00 42.95 O
ATOM 27 OP2 U B 5 21.833 68.593 -8.784 1.00 41.37 O
ATOM 28 O5' U B 5 19.760 68.539 -10.151 1.00 42.12 O
TER
ATOM 2 OP1 G A 3 29.768 78.285 -6.360 1.00 44.79 O
ATOM 3 OP2 G A 3 30.149 76.342 -7.981 1.00 43.33 O
ATOM 4 O5' G A 3 27.963 77.575 -7.871 1.00 35.39 O
ATOM 5 C5' G A 3 27.314 76.318 -8.061 1.00 35.67 C
ATOM 6 C4' G A 3 25.822 76.517 -8.216 1.00 34.51 C
ATOM 7 O4' G A 3 25.548 77.404 -9.338 1.00 36.80 O
ATOM 8 C3' G A 3 25.017 75.277 -8.547 1.00 34.55 C
ATOM 9 O3' G A 3 24.769 74.488 -7.390 1.00 33.53 O
ATOM 10 C2' G A 3 23.742 75.892 -9.116 1.00 36.78 C
ATOM 11 O2' G A 3 22.908 76.444 -8.119 1.00 39.81 O
ATOM 12 C1' G A 3 24.317 77.036 -9.950 1.00 35.98 C
ATOM 13 N9 G A 3 24.580 76.629 -11.328 1.00 34.72 N
ATOM 14 C8 G A 3 25.807 76.477 -11.930 1.00 34.17 C
ATOM 15 N7 G A 3 25.724 76.081 -13.173 1.00 33.76 N
ATOM 16 C5 G A 3 24.360 75.969 -13.410 1.00 33.26 C
ATOM 17 C6 G A 3 23.654 75.577 -14.587 1.00 35.38 C
ATOM 18 O6 G A 3 24.112 75.246 -15.693 1.00 32.94 O
ATOM 19 N1 G A 3 22.276 75.595 -14.386 1.00 36.77 N
ATOM 20 C2 G A 3 21.655 75.948 -13.213 1.00 36.98 C
ATOM 21 N2 G A 3 20.318 75.897 -13.219 1.00 37.71 N
ATOM 22 N3 G A 3 22.298 76.321 -12.114 1.00 36.43 N
ATOM 23 C4 G A 3 23.638 76.306 -12.283 1.00 34.03 C
ATOM 24 P G A 4 24.793 72.884 -7.505 1.00 35.39 P
ATOM 25 OP1 G A 4 24.692 72.323 -6.134 1.00 37.70 O
ATOM 26 OP2 G A 4 25.931 72.501 -8.379 1.00 35.36 O
ATOM 27 O5' G A 4 23.448 72.513 -8.269 1.00 36.43 O
TER
ATOM 1 O3' G B 3 24.769 74.488 -7.390 1.00 33.53 O
ATOM 2 P G B 4 24.793 72.884 -7.505 1.00 35.39 P
ATOM 3 OP1 G B 4 24.692 72.323 -6.134 1.00 37.70 O
ATOM 4 OP2 G B 4 25.931 72.501 -8.379 1.00 35.36 O
ATOM 5 O5' G B 4 23.448 72.513 -8.269 1.00 36.43 O
ATOM 6 C5' G B 4 22.182 72.925 -7.761 1.00 37.22 C
ATOM 7 C4' G B 4 21.115 72.733 -8.810 1.00 36.77 C
ATOM 8 O4' G B 4 21.402 73.593 -9.943 1.00 38.89 O
ATOM 9 C3' G B 4 21.039 71.339 -9.409 1.00 37.42 C
ATOM 10 O3' G B 4 20.223 70.491 -8.613 1.00 38.54 O
ATOM 11 C2' G B 4 20.388 71.603 -10.758 1.00 37.91 C
ATOM 12 O2' G B 4 18.989 71.745 -10.644 1.00 38.04 O
ATOM 13 C1' G B 4 21.018 72.942 -11.142 1.00 37.12 C
ATOM 14 N9 G B 4 22.200 72.776 -11.977 1.00 36.20 N
ATOM 15 C8 G B 4 23.516 72.914 -11.604 1.00 36.41 C
ATOM 16 N7 G B 4 24.351 72.690 -12.583 1.00 38.45 N
ATOM 17 C5 G B 4 23.536 72.390 -13.667 1.00 36.43 C
ATOM 18 C6 G B 4 23.868 72.065 -15.015 1.00 36.38 C
ATOM 19 O6 G B 4 24.986 71.988 -15.538 1.00 36.21 O
ATOM 20 N1 G B 4 22.729 71.824 -15.777 1.00 35.27 N
ATOM 21 C2 G B 4 21.438 71.896 -15.314 1.00 35.91 C
ATOM 22 N2 G B 4 20.474 71.621 -16.200 1.00 34.30 N
ATOM 23 N3 G B 4 21.116 72.212 -14.070 1.00 36.86 N
ATOM 24 C4 G B 4 22.206 72.441 -13.307 1.00 37.86 C
ATOM 25 P U B 5 20.378 68.898 -8.729 1.00 42.88 P
ATOM 26 OP1 U B 5 19.537 68.280 -7.676 1.00 42.95 O
ATOM 27 OP2 U B 5 21.833 68.593 -8.784 1.00 41.37 O
ATOM 28 O5' U B 5 19.760 68.539 -10.151 1.00 42.12 O
TER
Atoms:
OP1: (29.768,78.285,-6.360)
OP2: (30.149,76.342,-7.981)
C3': (25.017,75.277,-8.547)
C1': (24.317,77.036,-9.950)
C5': (27.314,76.318,-8.061)
O6: (24.112,75.246,-15.693)
O4': (25.548,77.404,-9.338)
C8: (25.807,76.477,-11.930)
C2: (21.655,75.948,-13.213)
C6: (23.654,75.577,-14.587)
C5: (24.360,75.969,-13.410)
C4: (23.638,76.306,-12.283)
P: (29.541,77.666,-7.679)
C4': (25.822,76.517,-8.216)
C2': (23.742,75.892,-9.116)
O2': (22.908,76.444,-8.119)
N1: (22.276,75.595,-14.386)
N2: (20.318,75.897,-13.219)
N3: (22.298,76.321,-12.114)
N7: (25.724,76.081,-13.173)
N9: (24.580,76.629,-11.328)
O5': (27.963,77.575,-7.871)
O3': (24.769,74.488,-7.390)
OP2: (30.149,76.342,-7.981)
C3': (25.017,75.277,-8.547)
C1': (24.317,77.036,-9.950)
C5': (27.314,76.318,-8.061)
O6: (24.112,75.246,-15.693)
O4': (25.548,77.404,-9.338)
C8: (25.807,76.477,-11.930)
C2: (21.655,75.948,-13.213)
C6: (23.654,75.577,-14.587)
C5: (24.360,75.969,-13.410)
C4: (23.638,76.306,-12.283)
P: (29.541,77.666,-7.679)
C4': (25.822,76.517,-8.216)
C2': (23.742,75.892,-9.116)
O2': (22.908,76.444,-8.119)
N1: (22.276,75.595,-14.386)
N2: (20.318,75.897,-13.219)
N3: (22.298,76.321,-12.114)
N7: (25.724,76.081,-13.173)
N9: (24.580,76.629,-11.328)
O5': (27.963,77.575,-7.871)
O3': (24.769,74.488,-7.390)
OP1: (24.692,72.323,-6.134)
OP2: (25.931,72.501,-8.379)
C3': (21.039,71.339,-9.409)
C1': (21.018,72.942,-11.142)
C5': (22.182,72.925,-7.761)
O6: (24.986,71.988,-15.538)
O4': (21.402,73.593,-9.943)
C8: (23.516,72.914,-11.604)
C2: (21.438,71.896,-15.314)
C6: (23.868,72.065,-15.015)
C5: (23.536,72.390,-13.667)
C4: (22.206,72.441,-13.307)
P: (24.793,72.884,-7.505)
C4': (21.115,72.733,-8.810)
C2': (20.388,71.603,-10.758)
O2': (18.989,71.745,-10.644)
N1: (22.729,71.824,-15.777)
N2: (20.474,71.621,-16.200)
N3: (21.116,72.212,-14.070)
N7: (24.351,72.690,-12.583)
N9: (22.200,72.776,-11.977)
O5': (23.448,72.513,-8.269)
O3': (20.223,70.491,-8.613)
OP2: (25.931,72.501,-8.379)
C3': (21.039,71.339,-9.409)
C1': (21.018,72.942,-11.142)
C5': (22.182,72.925,-7.761)
O6: (24.986,71.988,-15.538)
O4': (21.402,73.593,-9.943)
C8: (23.516,72.914,-11.604)
C2: (21.438,71.896,-15.314)
C6: (23.868,72.065,-15.015)
C5: (23.536,72.390,-13.667)
C4: (22.206,72.441,-13.307)
P: (24.793,72.884,-7.505)
C4': (21.115,72.733,-8.810)
C2': (20.388,71.603,-10.758)
O2': (18.989,71.745,-10.644)
N1: (22.729,71.824,-15.777)
N2: (20.474,71.621,-16.200)
N3: (21.116,72.212,-14.070)
N7: (24.351,72.690,-12.583)
N9: (22.200,72.776,-11.977)
O5': (23.448,72.513,-8.269)
O3': (20.223,70.491,-8.613)
Image (generated by PyMOL):