Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:W9:W10
Extra
PDB:
ATOM 1 O3' G A 8 -1.011 9.686 36.276 1.00 41.44 O
ATOM 2 P A A 9 -0.489 11.156 36.584 1.00 39.37 P
ATOM 3 OP1 A A 9 0.927 11.081 37.014 1.00 41.71 O
ATOM 4 OP2 A A 9 -0.862 11.953 35.390 1.00 36.90 O
ATOM 5 O5' A A 9 -1.406 11.533 37.824 1.00 39.11 O
ATOM 6 C5' A A 9 -1.015 12.561 38.737 1.00 38.61 C
ATOM 7 C4' A A 9 -1.288 12.252 40.197 1.00 40.88 C
ATOM 8 O4' A A 9 -0.992 13.444 40.976 1.00 40.54 O
ATOM 9 C3' A A 9 -2.739 11.904 40.512 1.00 41.67 C
ATOM 10 O3' A A 9 -2.783 11.134 41.717 1.00 43.51 O
ATOM 11 C2' A A 9 -3.324 13.286 40.768 1.00 39.25 C
ATOM 12 O2' A A 9 -4.522 13.291 41.506 1.00 38.54 O
ATOM 13 C1' A A 9 -2.189 13.927 41.553 1.00 40.34 C
ATOM 14 N9 A A 9 -2.168 15.388 41.511 1.00 40.59 N
ATOM 15 C8 A A 9 -2.103 16.216 42.589 1.00 42.13 C
ATOM 16 N7 A A 9 -2.087 17.481 42.299 1.00 43.20 N
ATOM 17 C5 A A 9 -2.146 17.489 40.932 1.00 42.18 C
ATOM 18 C6 A A 9 -2.154 18.548 40.031 1.00 42.72 C
ATOM 19 N6 A A 9 -2.100 19.835 40.399 1.00 44.51 N
ATOM 20 N1 A A 9 -2.224 18.230 38.724 1.00 41.57 N
ATOM 21 C2 A A 9 -2.265 16.943 38.364 1.00 40.14 C
ATOM 22 N3 A A 9 -2.252 15.864 39.133 1.00 39.60 N
ATOM 23 C4 A A 9 -2.192 16.214 40.426 1.00 40.62 C
ATOM 24 P U A 10 -2.998 9.545 41.804 1.00 46.04 P
ATOM 25 OP1 U A 10 -2.944 9.149 43.212 1.00 47.61 O
ATOM 26 OP2 U A 10 -2.002 8.899 40.938 1.00 46.95 O
ATOM 27 O5' U A 10 -4.483 9.388 41.281 1.00 45.32 O
TER
ATOM 1 O3' A B 9 -2.783 11.134 41.717 1.00 43.51 O
ATOM 2 P U B 10 -2.998 9.545 41.804 1.00 46.04 P
ATOM 3 OP1 U B 10 -2.944 9.149 43.212 1.00 47.61 O
ATOM 4 OP2 U B 10 -2.002 8.899 40.938 1.00 46.95 O
ATOM 5 O5' U B 10 -4.483 9.388 41.281 1.00 45.32 O
ATOM 6 C5' U B 10 -5.525 9.601 42.211 1.00 43.83 C
ATOM 7 C4' U B 10 -6.903 9.454 41.615 1.00 45.54 C
ATOM 8 O4' U B 10 -7.118 10.402 40.538 1.00 43.90 O
ATOM 9 C3' U B 10 -7.244 8.110 41.001 1.00 48.85 C
ATOM 10 O3' U B 10 -7.585 7.155 41.985 1.00 52.43 O
ATOM 11 C2' U B 10 -8.399 8.462 40.073 1.00 49.83 C
ATOM 12 O2' U B 10 -9.585 8.656 40.823 1.00 52.72 O
ATOM 13 C1' U B 10 -7.980 9.838 39.567 1.00 46.13 C
ATOM 14 N1 U B 10 -7.297 9.905 38.247 1.00 44.31 N
ATOM 15 C2 U B 10 -8.033 9.858 37.068 1.00 45.17 C
ATOM 16 O2 U B 10 -9.249 9.717 37.025 1.00 47.97 O
ATOM 17 N3 U B 10 -7.277 9.966 35.924 1.00 43.51 N
ATOM 18 C4 U B 10 -5.917 10.128 35.840 1.00 41.92 C
ATOM 19 O4 U B 10 -5.381 10.215 34.752 1.00 41.42 O
ATOM 20 C5 U B 10 -5.238 10.183 37.079 1.00 42.01 C
ATOM 21 C6 U B 10 -5.933 10.076 38.211 1.00 42.77 C
ATOM 22 P U B 11 -7.026 5.660 41.902 1.00 57.41 P
ATOM 23 OP1 U B 11 -5.549 5.633 41.752 1.00 52.81 O
ATOM 24 OP2 U B 11 -7.712 5.047 43.069 1.00 55.86 O
ATOM 25 O5' U B 11 -7.639 5.165 40.531 1.00 54.28 O
TER
ATOM 2 P A A 9 -0.489 11.156 36.584 1.00 39.37 P
ATOM 3 OP1 A A 9 0.927 11.081 37.014 1.00 41.71 O
ATOM 4 OP2 A A 9 -0.862 11.953 35.390 1.00 36.90 O
ATOM 5 O5' A A 9 -1.406 11.533 37.824 1.00 39.11 O
ATOM 6 C5' A A 9 -1.015 12.561 38.737 1.00 38.61 C
ATOM 7 C4' A A 9 -1.288 12.252 40.197 1.00 40.88 C
ATOM 8 O4' A A 9 -0.992 13.444 40.976 1.00 40.54 O
ATOM 9 C3' A A 9 -2.739 11.904 40.512 1.00 41.67 C
ATOM 10 O3' A A 9 -2.783 11.134 41.717 1.00 43.51 O
ATOM 11 C2' A A 9 -3.324 13.286 40.768 1.00 39.25 C
ATOM 12 O2' A A 9 -4.522 13.291 41.506 1.00 38.54 O
ATOM 13 C1' A A 9 -2.189 13.927 41.553 1.00 40.34 C
ATOM 14 N9 A A 9 -2.168 15.388 41.511 1.00 40.59 N
ATOM 15 C8 A A 9 -2.103 16.216 42.589 1.00 42.13 C
ATOM 16 N7 A A 9 -2.087 17.481 42.299 1.00 43.20 N
ATOM 17 C5 A A 9 -2.146 17.489 40.932 1.00 42.18 C
ATOM 18 C6 A A 9 -2.154 18.548 40.031 1.00 42.72 C
ATOM 19 N6 A A 9 -2.100 19.835 40.399 1.00 44.51 N
ATOM 20 N1 A A 9 -2.224 18.230 38.724 1.00 41.57 N
ATOM 21 C2 A A 9 -2.265 16.943 38.364 1.00 40.14 C
ATOM 22 N3 A A 9 -2.252 15.864 39.133 1.00 39.60 N
ATOM 23 C4 A A 9 -2.192 16.214 40.426 1.00 40.62 C
ATOM 24 P U A 10 -2.998 9.545 41.804 1.00 46.04 P
ATOM 25 OP1 U A 10 -2.944 9.149 43.212 1.00 47.61 O
ATOM 26 OP2 U A 10 -2.002 8.899 40.938 1.00 46.95 O
ATOM 27 O5' U A 10 -4.483 9.388 41.281 1.00 45.32 O
TER
ATOM 1 O3' A B 9 -2.783 11.134 41.717 1.00 43.51 O
ATOM 2 P U B 10 -2.998 9.545 41.804 1.00 46.04 P
ATOM 3 OP1 U B 10 -2.944 9.149 43.212 1.00 47.61 O
ATOM 4 OP2 U B 10 -2.002 8.899 40.938 1.00 46.95 O
ATOM 5 O5' U B 10 -4.483 9.388 41.281 1.00 45.32 O
ATOM 6 C5' U B 10 -5.525 9.601 42.211 1.00 43.83 C
ATOM 7 C4' U B 10 -6.903 9.454 41.615 1.00 45.54 C
ATOM 8 O4' U B 10 -7.118 10.402 40.538 1.00 43.90 O
ATOM 9 C3' U B 10 -7.244 8.110 41.001 1.00 48.85 C
ATOM 10 O3' U B 10 -7.585 7.155 41.985 1.00 52.43 O
ATOM 11 C2' U B 10 -8.399 8.462 40.073 1.00 49.83 C
ATOM 12 O2' U B 10 -9.585 8.656 40.823 1.00 52.72 O
ATOM 13 C1' U B 10 -7.980 9.838 39.567 1.00 46.13 C
ATOM 14 N1 U B 10 -7.297 9.905 38.247 1.00 44.31 N
ATOM 15 C2 U B 10 -8.033 9.858 37.068 1.00 45.17 C
ATOM 16 O2 U B 10 -9.249 9.717 37.025 1.00 47.97 O
ATOM 17 N3 U B 10 -7.277 9.966 35.924 1.00 43.51 N
ATOM 18 C4 U B 10 -5.917 10.128 35.840 1.00 41.92 C
ATOM 19 O4 U B 10 -5.381 10.215 34.752 1.00 41.42 O
ATOM 20 C5 U B 10 -5.238 10.183 37.079 1.00 42.01 C
ATOM 21 C6 U B 10 -5.933 10.076 38.211 1.00 42.77 C
ATOM 22 P U B 11 -7.026 5.660 41.902 1.00 57.41 P
ATOM 23 OP1 U B 11 -5.549 5.633 41.752 1.00 52.81 O
ATOM 24 OP2 U B 11 -7.712 5.047 43.069 1.00 55.86 O
ATOM 25 O5' U B 11 -7.639 5.165 40.531 1.00 54.28 O
TER
Atoms:
OP1: (0.927,11.081,37.014)
OP2: (-0.862,11.953,35.390)
C3': (-2.739,11.904,40.512)
C1': (-2.189,13.927,41.553)
C5': (-1.015,12.561,38.737)
O4': (-0.992,13.444,40.976)
C8: (-2.103,16.216,42.589)
O2': (-4.522,13.291,41.506)
C6: (-2.154,18.548,40.031)
C5: (-2.146,17.489,40.932)
C4: (-2.192,16.214,40.426)
P: (-0.489,11.156,36.584)
C4': (-1.288,12.252,40.197)
C2': (-3.324,13.286,40.768)
C2: (-2.265,16.943,38.364)
N1: (-2.224,18.230,38.724)
N3: (-2.252,15.864,39.133)
N6: (-2.100,19.835,40.399)
N7: (-2.087,17.481,42.299)
N9: (-2.168,15.388,41.511)
O5': (-1.406,11.533,37.824)
O3': (-2.783,11.134,41.717)
OP2: (-0.862,11.953,35.390)
C3': (-2.739,11.904,40.512)
C1': (-2.189,13.927,41.553)
C5': (-1.015,12.561,38.737)
O4': (-0.992,13.444,40.976)
C8: (-2.103,16.216,42.589)
O2': (-4.522,13.291,41.506)
C6: (-2.154,18.548,40.031)
C5: (-2.146,17.489,40.932)
C4: (-2.192,16.214,40.426)
P: (-0.489,11.156,36.584)
C4': (-1.288,12.252,40.197)
C2': (-3.324,13.286,40.768)
C2: (-2.265,16.943,38.364)
N1: (-2.224,18.230,38.724)
N3: (-2.252,15.864,39.133)
N6: (-2.100,19.835,40.399)
N7: (-2.087,17.481,42.299)
N9: (-2.168,15.388,41.511)
O5': (-1.406,11.533,37.824)
O3': (-2.783,11.134,41.717)
C4: (-5.917,10.128,35.840)
N3: (-7.277,9.966,35.924)
OP1: (-2.944,9.149,43.212)
OP2: (-2.002,8.899,40.938)
C2: (-8.033,9.858,37.068)
C1': (-7.980,9.838,39.567)
C3': (-7.244,8.110,41.001)
O5': (-4.483,9.388,41.281)
O4': (-7.118,10.402,40.538)
C5': (-5.525,9.601,42.211)
P: (-2.998,9.545,41.804)
C4': (-6.903,9.454,41.615)
C2': (-8.399,8.462,40.073)
O2': (-9.585,8.656,40.823)
N1: (-7.297,9.905,38.247)
O4: (-5.381,10.215,34.752)
O2: (-9.249,9.717,37.025)
C6: (-5.933,10.076,38.211)
C5: (-5.238,10.183,37.079)
O3': (-7.585,7.155,41.985)
N3: (-7.277,9.966,35.924)
OP1: (-2.944,9.149,43.212)
OP2: (-2.002,8.899,40.938)
C2: (-8.033,9.858,37.068)
C1': (-7.980,9.838,39.567)
C3': (-7.244,8.110,41.001)
O5': (-4.483,9.388,41.281)
O4': (-7.118,10.402,40.538)
C5': (-5.525,9.601,42.211)
P: (-2.998,9.545,41.804)
C4': (-6.903,9.454,41.615)
C2': (-8.399,8.462,40.073)
O2': (-9.585,8.656,40.823)
N1: (-7.297,9.905,38.247)
O4: (-5.381,10.215,34.752)
O2: (-9.249,9.717,37.025)
C6: (-5.933,10.076,38.211)
C5: (-5.238,10.183,37.079)
O3': (-7.585,7.155,41.985)
Image (generated by PyMOL):