Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X9:X32
Extra
PDB:
ATOM 1 O3' G A 8 -21.763 -2.592 -1.239 1.00 34.88 O
ATOM 2 P G A 9 -21.152 -2.109 0.155 1.00 35.04 P
ATOM 3 OP1 G A 9 -22.240 -2.167 1.149 1.00 34.57 O
ATOM 4 OP2 G A 9 -20.402 -0.852 -0.061 1.00 35.48 O
ATOM 5 O5' G A 9 -20.078 -3.247 0.480 1.00 33.44 O
ATOM 6 C5' G A 9 -20.484 -4.593 0.699 1.00 33.07 C
ATOM 7 C4' G A 9 -19.267 -5.499 0.698 1.00 32.33 C
ATOM 8 O4' G A 9 -18.648 -5.461 -0.610 1.00 31.80 O
ATOM 9 C3' G A 9 -18.159 -5.095 1.658 1.00 31.86 C
ATOM 10 O3' G A 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 11 C2' G A 9 -16.936 -5.716 0.992 1.00 31.74 C
ATOM 12 O2' G A 9 -16.856 -7.109 1.231 1.00 32.06 O
ATOM 13 C1' G A 9 -17.238 -5.478 -0.484 1.00 31.54 C
ATOM 14 N9 G A 9 -16.737 -4.229 -1.059 1.00 30.37 N
ATOM 15 C8 G A 9 -17.283 -2.976 -0.913 1.00 30.07 C
ATOM 16 N7 G A 9 -16.642 -2.050 -1.570 1.00 30.50 N
ATOM 17 C5 G A 9 -15.610 -2.737 -2.198 1.00 30.03 C
ATOM 18 C6 G A 9 -14.584 -2.261 -3.048 1.00 29.79 C
ATOM 19 O6 G A 9 -14.381 -1.101 -3.428 1.00 28.24 O
ATOM 20 N1 G A 9 -13.745 -3.289 -3.474 1.00 29.32 N
ATOM 21 C2 G A 9 -13.869 -4.611 -3.118 1.00 29.29 C
ATOM 22 N2 G A 9 -12.960 -5.460 -3.638 1.00 27.53 N
ATOM 23 N3 G A 9 -14.825 -5.068 -2.319 1.00 29.24 N
ATOM 24 C4 G A 9 -15.659 -4.080 -1.901 1.00 30.11 C
ATOM 25 P U A 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 26 OP1 U A 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 27 OP2 U A 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 28 O5' U A 10 -16.454 -4.897 4.286 1.00 32.18 O
TER
ATOM 1 O3' A B 31 -8.207 -12.422 -6.822 1.00 31.40 O
ATOM 2 P G B 32 -7.704 -12.544 -5.307 1.00 31.72 P
ATOM 3 OP1 G B 32 -6.233 -12.722 -5.332 1.00 33.26 O
ATOM 4 OP2 G B 32 -8.556 -13.561 -4.646 1.00 31.74 O
ATOM 5 O5' G B 32 -8.013 -11.120 -4.654 1.00 31.39 O
ATOM 6 C5' G B 32 -7.525 -9.926 -5.266 1.00 30.57 C
ATOM 7 C4' G B 32 -8.384 -8.730 -4.884 1.00 31.20 C
ATOM 8 O4' G B 32 -9.716 -8.896 -5.432 1.00 30.22 O
ATOM 9 C3' G B 32 -8.585 -8.526 -3.389 1.00 31.63 C
ATOM 10 O3' G B 32 -7.558 -7.695 -2.864 1.00 32.11 O
ATOM 11 C2' G B 32 -9.956 -7.850 -3.314 1.00 31.15 C
ATOM 12 O2' G B 32 -9.887 -6.447 -3.488 1.00 31.75 O
ATOM 13 C1' G B 32 -10.690 -8.490 -4.487 1.00 30.45 C
ATOM 14 N9 G B 32 -11.512 -9.654 -4.152 1.00 29.48 N
ATOM 15 C8 G B 32 -11.159 -10.977 -4.256 1.00 28.97 C
ATOM 16 N7 G B 32 -12.115 -11.794 -3.916 1.00 29.61 N
ATOM 17 C5 G B 32 -13.172 -10.967 -3.564 1.00 29.30 C
ATOM 18 C6 G B 32 -14.474 -11.288 -3.103 1.00 29.88 C
ATOM 19 O6 G B 32 -14.963 -12.410 -2.912 1.00 30.21 O
ATOM 20 N1 G B 32 -15.233 -10.145 -2.861 1.00 27.99 N
ATOM 21 C2 G B 32 -14.785 -8.855 -3.042 1.00 28.56 C
ATOM 22 N2 G B 32 -15.650 -7.870 -2.763 1.00 26.86 N
ATOM 23 N3 G B 32 -13.567 -8.543 -3.466 1.00 28.13 N
ATOM 24 C4 G B 32 -12.817 -9.645 -3.707 1.00 29.05 C
ATOM 25 P A B 33 -7.040 -7.912 -1.364 1.00 33.67 P
ATOM 26 OP1 A B 33 -6.146 -6.784 -1.031 1.00 33.21 O
ATOM 27 OP2 A B 33 -6.560 -9.305 -1.231 1.00 32.34 O
ATOM 28 O5' A B 33 -8.381 -7.783 -0.507 1.00 33.59 O
TER
ATOM 2 P G A 9 -21.152 -2.109 0.155 1.00 35.04 P
ATOM 3 OP1 G A 9 -22.240 -2.167 1.149 1.00 34.57 O
ATOM 4 OP2 G A 9 -20.402 -0.852 -0.061 1.00 35.48 O
ATOM 5 O5' G A 9 -20.078 -3.247 0.480 1.00 33.44 O
ATOM 6 C5' G A 9 -20.484 -4.593 0.699 1.00 33.07 C
ATOM 7 C4' G A 9 -19.267 -5.499 0.698 1.00 32.33 C
ATOM 8 O4' G A 9 -18.648 -5.461 -0.610 1.00 31.80 O
ATOM 9 C3' G A 9 -18.159 -5.095 1.658 1.00 31.86 C
ATOM 10 O3' G A 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 11 C2' G A 9 -16.936 -5.716 0.992 1.00 31.74 C
ATOM 12 O2' G A 9 -16.856 -7.109 1.231 1.00 32.06 O
ATOM 13 C1' G A 9 -17.238 -5.478 -0.484 1.00 31.54 C
ATOM 14 N9 G A 9 -16.737 -4.229 -1.059 1.00 30.37 N
ATOM 15 C8 G A 9 -17.283 -2.976 -0.913 1.00 30.07 C
ATOM 16 N7 G A 9 -16.642 -2.050 -1.570 1.00 30.50 N
ATOM 17 C5 G A 9 -15.610 -2.737 -2.198 1.00 30.03 C
ATOM 18 C6 G A 9 -14.584 -2.261 -3.048 1.00 29.79 C
ATOM 19 O6 G A 9 -14.381 -1.101 -3.428 1.00 28.24 O
ATOM 20 N1 G A 9 -13.745 -3.289 -3.474 1.00 29.32 N
ATOM 21 C2 G A 9 -13.869 -4.611 -3.118 1.00 29.29 C
ATOM 22 N2 G A 9 -12.960 -5.460 -3.638 1.00 27.53 N
ATOM 23 N3 G A 9 -14.825 -5.068 -2.319 1.00 29.24 N
ATOM 24 C4 G A 9 -15.659 -4.080 -1.901 1.00 30.11 C
ATOM 25 P U A 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 26 OP1 U A 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 27 OP2 U A 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 28 O5' U A 10 -16.454 -4.897 4.286 1.00 32.18 O
TER
ATOM 1 O3' A B 31 -8.207 -12.422 -6.822 1.00 31.40 O
ATOM 2 P G B 32 -7.704 -12.544 -5.307 1.00 31.72 P
ATOM 3 OP1 G B 32 -6.233 -12.722 -5.332 1.00 33.26 O
ATOM 4 OP2 G B 32 -8.556 -13.561 -4.646 1.00 31.74 O
ATOM 5 O5' G B 32 -8.013 -11.120 -4.654 1.00 31.39 O
ATOM 6 C5' G B 32 -7.525 -9.926 -5.266 1.00 30.57 C
ATOM 7 C4' G B 32 -8.384 -8.730 -4.884 1.00 31.20 C
ATOM 8 O4' G B 32 -9.716 -8.896 -5.432 1.00 30.22 O
ATOM 9 C3' G B 32 -8.585 -8.526 -3.389 1.00 31.63 C
ATOM 10 O3' G B 32 -7.558 -7.695 -2.864 1.00 32.11 O
ATOM 11 C2' G B 32 -9.956 -7.850 -3.314 1.00 31.15 C
ATOM 12 O2' G B 32 -9.887 -6.447 -3.488 1.00 31.75 O
ATOM 13 C1' G B 32 -10.690 -8.490 -4.487 1.00 30.45 C
ATOM 14 N9 G B 32 -11.512 -9.654 -4.152 1.00 29.48 N
ATOM 15 C8 G B 32 -11.159 -10.977 -4.256 1.00 28.97 C
ATOM 16 N7 G B 32 -12.115 -11.794 -3.916 1.00 29.61 N
ATOM 17 C5 G B 32 -13.172 -10.967 -3.564 1.00 29.30 C
ATOM 18 C6 G B 32 -14.474 -11.288 -3.103 1.00 29.88 C
ATOM 19 O6 G B 32 -14.963 -12.410 -2.912 1.00 30.21 O
ATOM 20 N1 G B 32 -15.233 -10.145 -2.861 1.00 27.99 N
ATOM 21 C2 G B 32 -14.785 -8.855 -3.042 1.00 28.56 C
ATOM 22 N2 G B 32 -15.650 -7.870 -2.763 1.00 26.86 N
ATOM 23 N3 G B 32 -13.567 -8.543 -3.466 1.00 28.13 N
ATOM 24 C4 G B 32 -12.817 -9.645 -3.707 1.00 29.05 C
ATOM 25 P A B 33 -7.040 -7.912 -1.364 1.00 33.67 P
ATOM 26 OP1 A B 33 -6.146 -6.784 -1.031 1.00 33.21 O
ATOM 27 OP2 A B 33 -6.560 -9.305 -1.231 1.00 32.34 O
ATOM 28 O5' A B 33 -8.381 -7.783 -0.507 1.00 33.59 O
TER
Atoms:
OP1: (-22.240,-2.167,1.149)
OP2: (-20.402,-0.852,-0.061)
C3': (-18.159,-5.095,1.658)
C1': (-17.238,-5.478,-0.484)
C5': (-20.484,-4.593,0.699)
O6: (-14.381,-1.101,-3.428)
O4': (-18.648,-5.461,-0.610)
C8: (-17.283,-2.976,-0.913)
C2: (-13.869,-4.611,-3.118)
C6: (-14.584,-2.261,-3.048)
C5: (-15.610,-2.737,-2.198)
C4: (-15.659,-4.080,-1.901)
P: (-21.152,-2.109,0.155)
C4': (-19.267,-5.499,0.698)
C2': (-16.936,-5.716,0.992)
O2': (-16.856,-7.109,1.231)
N1: (-13.745,-3.289,-3.474)
N2: (-12.960,-5.460,-3.638)
N3: (-14.825,-5.068,-2.319)
N7: (-16.642,-2.050,-1.570)
N9: (-16.737,-4.229,-1.059)
O5': (-20.078,-3.247,0.480)
O3': (-18.409,-5.648,2.944)
OP2: (-20.402,-0.852,-0.061)
C3': (-18.159,-5.095,1.658)
C1': (-17.238,-5.478,-0.484)
C5': (-20.484,-4.593,0.699)
O6: (-14.381,-1.101,-3.428)
O4': (-18.648,-5.461,-0.610)
C8: (-17.283,-2.976,-0.913)
C2: (-13.869,-4.611,-3.118)
C6: (-14.584,-2.261,-3.048)
C5: (-15.610,-2.737,-2.198)
C4: (-15.659,-4.080,-1.901)
P: (-21.152,-2.109,0.155)
C4': (-19.267,-5.499,0.698)
C2': (-16.936,-5.716,0.992)
O2': (-16.856,-7.109,1.231)
N1: (-13.745,-3.289,-3.474)
N2: (-12.960,-5.460,-3.638)
N3: (-14.825,-5.068,-2.319)
N7: (-16.642,-2.050,-1.570)
N9: (-16.737,-4.229,-1.059)
O5': (-20.078,-3.247,0.480)
O3': (-18.409,-5.648,2.944)
OP1: (-6.233,-12.722,-5.332)
OP2: (-8.556,-13.561,-4.646)
C3': (-8.585,-8.526,-3.389)
C1': (-10.690,-8.490,-4.487)
C5': (-7.525,-9.926,-5.266)
O6: (-14.963,-12.410,-2.912)
O4': (-9.716,-8.896,-5.432)
C8: (-11.159,-10.977,-4.256)
C2: (-14.785,-8.855,-3.042)
C6: (-14.474,-11.288,-3.103)
C5: (-13.172,-10.967,-3.564)
C4: (-12.817,-9.645,-3.707)
P: (-7.704,-12.544,-5.307)
C4': (-8.384,-8.730,-4.884)
C2': (-9.956,-7.850,-3.314)
O2': (-9.887,-6.447,-3.488)
N1: (-15.233,-10.145,-2.861)
N2: (-15.650,-7.870,-2.763)
N3: (-13.567,-8.543,-3.466)
N7: (-12.115,-11.794,-3.916)
N9: (-11.512,-9.654,-4.152)
O5': (-8.013,-11.120,-4.654)
O3': (-7.558,-7.695,-2.864)
OP2: (-8.556,-13.561,-4.646)
C3': (-8.585,-8.526,-3.389)
C1': (-10.690,-8.490,-4.487)
C5': (-7.525,-9.926,-5.266)
O6: (-14.963,-12.410,-2.912)
O4': (-9.716,-8.896,-5.432)
C8: (-11.159,-10.977,-4.256)
C2: (-14.785,-8.855,-3.042)
C6: (-14.474,-11.288,-3.103)
C5: (-13.172,-10.967,-3.564)
C4: (-12.817,-9.645,-3.707)
P: (-7.704,-12.544,-5.307)
C4': (-8.384,-8.730,-4.884)
C2': (-9.956,-7.850,-3.314)
O2': (-9.887,-6.447,-3.488)
N1: (-15.233,-10.145,-2.861)
N2: (-15.650,-7.870,-2.763)
N3: (-13.567,-8.543,-3.466)
N7: (-12.115,-11.794,-3.916)
N9: (-11.512,-9.654,-4.152)
O5': (-8.013,-11.120,-4.654)
O3': (-7.558,-7.695,-2.864)
Image (generated by PyMOL):