Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:V9:V10
Extra
PDB:
ATOM 1 O3' G A 8 2.118 14.666 -5.712 1.00 67.57 O
ATOM 2 P A A 9 2.979 14.128 -6.962 1.00 67.22 P
ATOM 3 OP1 A A 9 4.416 14.316 -6.648 1.00 67.08 O
ATOM 4 OP2 A A 9 2.455 12.774 -7.266 1.00 65.89 O
ATOM 5 O5' A A 9 2.581 15.155 -8.101 1.00 69.03 O
ATOM 6 C5' A A 9 3.449 15.317 -9.219 1.00 69.57 C
ATOM 7 C4' A A 9 3.204 16.606 -9.954 1.00 71.68 C
ATOM 8 O4' A A 9 3.878 16.538 -11.233 1.00 72.18 O
ATOM 9 C3' A A 9 1.742 16.911 -10.268 1.00 72.62 C
ATOM 10 O3' A A 9 1.564 18.330 -10.330 1.00 74.66 O
ATOM 11 C2' A A 9 1.592 16.326 -11.666 1.00 72.69 C
ATOM 12 O2' A A 9 0.506 16.836 -12.403 1.00 74.22 O
ATOM 13 C1' A A 9 2.928 16.739 -12.264 1.00 73.26 C
ATOM 14 N9 A A 9 3.365 15.991 -13.444 1.00 72.87 N
ATOM 15 C8 A A 9 3.867 16.528 -14.595 1.00 74.29 C
ATOM 16 N7 A A 9 4.212 15.643 -15.491 1.00 73.57 N
ATOM 17 C5 A A 9 3.927 14.433 -14.880 1.00 71.52 C
ATOM 18 C6 A A 9 4.073 13.105 -15.307 1.00 69.96 C
ATOM 19 N6 A A 9 4.560 12.775 -16.506 1.00 70.19 N
ATOM 20 N1 A A 9 3.700 12.117 -14.469 1.00 68.25 N
ATOM 21 C2 A A 9 3.218 12.463 -13.282 1.00 68.12 C
ATOM 22 N3 A A 9 3.037 13.671 -12.767 1.00 69.42 N
ATOM 23 C4 A A 9 3.413 14.630 -13.621 1.00 71.10 C
ATOM 24 P U A 10 1.053 19.218 -9.086 1.00 75.31 P
ATOM 25 OP1 U A 10 1.371 20.634 -9.375 1.00 77.43 O
ATOM 26 OP2 U A 10 1.593 18.662 -7.829 1.00 73.69 O
ATOM 27 O5' U A 10 -0.489 18.930 -9.218 1.00 75.52 O
TER
ATOM 1 O3' A B 9 1.564 18.330 -10.330 1.00 74.66 O
ATOM 2 P U B 10 1.053 19.218 -9.086 1.00 75.31 P
ATOM 3 OP1 U B 10 1.371 20.634 -9.375 1.00 77.43 O
ATOM 4 OP2 U B 10 1.593 18.662 -7.829 1.00 73.69 O
ATOM 5 O5' U B 10 -0.489 18.930 -9.218 1.00 75.52 O
ATOM 6 C5' U B 10 -1.101 19.363 -10.412 1.00 77.13 C
ATOM 7 C4' U B 10 -2.551 18.991 -10.412 1.00 77.30 C
ATOM 8 O4' U B 10 -2.670 17.567 -10.617 1.00 75.53 O
ATOM 9 C3' U B 10 -3.266 19.242 -9.103 1.00 77.20 C
ATOM 10 O3' U B 10 -3.656 20.596 -8.955 1.00 79.21 O
ATOM 11 C2' U B 10 -4.419 18.247 -9.156 1.00 76.57 C
ATOM 12 O2' U B 10 -5.483 18.750 -9.949 1.00 78.44 O
ATOM 13 C1' U B 10 -3.776 17.073 -9.898 1.00 75.07 C
ATOM 14 N1 U B 10 -3.323 15.879 -9.141 1.00 72.85 N
ATOM 15 C2 U B 10 -4.305 15.042 -8.667 1.00 72.17 C
ATOM 16 O2 U B 10 -5.484 15.305 -8.825 1.00 73.37 O
ATOM 17 N3 U B 10 -3.870 13.920 -8.003 1.00 70.26 N
ATOM 18 C4 U B 10 -2.559 13.557 -7.789 1.00 68.99 C
ATOM 19 O4 U B 10 -2.314 12.516 -7.177 1.00 67.44 O
ATOM 20 C5 U B 10 -1.594 14.471 -8.324 1.00 69.80 C
ATOM 21 C6 U B 10 -1.996 15.570 -8.971 1.00 71.65 C
ATOM 22 P U B 11 -3.586 21.331 -7.523 1.00 79.31 P
ATOM 23 OP1 U B 11 -2.281 21.180 -6.829 1.00 78.03 O
ATOM 24 OP2 U B 11 -4.074 22.679 -7.889 1.00 81.77 O
ATOM 25 O5' U B 11 -4.682 20.556 -6.690 1.00 78.38 O
TER
ATOM 2 P A A 9 2.979 14.128 -6.962 1.00 67.22 P
ATOM 3 OP1 A A 9 4.416 14.316 -6.648 1.00 67.08 O
ATOM 4 OP2 A A 9 2.455 12.774 -7.266 1.00 65.89 O
ATOM 5 O5' A A 9 2.581 15.155 -8.101 1.00 69.03 O
ATOM 6 C5' A A 9 3.449 15.317 -9.219 1.00 69.57 C
ATOM 7 C4' A A 9 3.204 16.606 -9.954 1.00 71.68 C
ATOM 8 O4' A A 9 3.878 16.538 -11.233 1.00 72.18 O
ATOM 9 C3' A A 9 1.742 16.911 -10.268 1.00 72.62 C
ATOM 10 O3' A A 9 1.564 18.330 -10.330 1.00 74.66 O
ATOM 11 C2' A A 9 1.592 16.326 -11.666 1.00 72.69 C
ATOM 12 O2' A A 9 0.506 16.836 -12.403 1.00 74.22 O
ATOM 13 C1' A A 9 2.928 16.739 -12.264 1.00 73.26 C
ATOM 14 N9 A A 9 3.365 15.991 -13.444 1.00 72.87 N
ATOM 15 C8 A A 9 3.867 16.528 -14.595 1.00 74.29 C
ATOM 16 N7 A A 9 4.212 15.643 -15.491 1.00 73.57 N
ATOM 17 C5 A A 9 3.927 14.433 -14.880 1.00 71.52 C
ATOM 18 C6 A A 9 4.073 13.105 -15.307 1.00 69.96 C
ATOM 19 N6 A A 9 4.560 12.775 -16.506 1.00 70.19 N
ATOM 20 N1 A A 9 3.700 12.117 -14.469 1.00 68.25 N
ATOM 21 C2 A A 9 3.218 12.463 -13.282 1.00 68.12 C
ATOM 22 N3 A A 9 3.037 13.671 -12.767 1.00 69.42 N
ATOM 23 C4 A A 9 3.413 14.630 -13.621 1.00 71.10 C
ATOM 24 P U A 10 1.053 19.218 -9.086 1.00 75.31 P
ATOM 25 OP1 U A 10 1.371 20.634 -9.375 1.00 77.43 O
ATOM 26 OP2 U A 10 1.593 18.662 -7.829 1.00 73.69 O
ATOM 27 O5' U A 10 -0.489 18.930 -9.218 1.00 75.52 O
TER
ATOM 1 O3' A B 9 1.564 18.330 -10.330 1.00 74.66 O
ATOM 2 P U B 10 1.053 19.218 -9.086 1.00 75.31 P
ATOM 3 OP1 U B 10 1.371 20.634 -9.375 1.00 77.43 O
ATOM 4 OP2 U B 10 1.593 18.662 -7.829 1.00 73.69 O
ATOM 5 O5' U B 10 -0.489 18.930 -9.218 1.00 75.52 O
ATOM 6 C5' U B 10 -1.101 19.363 -10.412 1.00 77.13 C
ATOM 7 C4' U B 10 -2.551 18.991 -10.412 1.00 77.30 C
ATOM 8 O4' U B 10 -2.670 17.567 -10.617 1.00 75.53 O
ATOM 9 C3' U B 10 -3.266 19.242 -9.103 1.00 77.20 C
ATOM 10 O3' U B 10 -3.656 20.596 -8.955 1.00 79.21 O
ATOM 11 C2' U B 10 -4.419 18.247 -9.156 1.00 76.57 C
ATOM 12 O2' U B 10 -5.483 18.750 -9.949 1.00 78.44 O
ATOM 13 C1' U B 10 -3.776 17.073 -9.898 1.00 75.07 C
ATOM 14 N1 U B 10 -3.323 15.879 -9.141 1.00 72.85 N
ATOM 15 C2 U B 10 -4.305 15.042 -8.667 1.00 72.17 C
ATOM 16 O2 U B 10 -5.484 15.305 -8.825 1.00 73.37 O
ATOM 17 N3 U B 10 -3.870 13.920 -8.003 1.00 70.26 N
ATOM 18 C4 U B 10 -2.559 13.557 -7.789 1.00 68.99 C
ATOM 19 O4 U B 10 -2.314 12.516 -7.177 1.00 67.44 O
ATOM 20 C5 U B 10 -1.594 14.471 -8.324 1.00 69.80 C
ATOM 21 C6 U B 10 -1.996 15.570 -8.971 1.00 71.65 C
ATOM 22 P U B 11 -3.586 21.331 -7.523 1.00 79.31 P
ATOM 23 OP1 U B 11 -2.281 21.180 -6.829 1.00 78.03 O
ATOM 24 OP2 U B 11 -4.074 22.679 -7.889 1.00 81.77 O
ATOM 25 O5' U B 11 -4.682 20.556 -6.690 1.00 78.38 O
TER
Atoms:
OP1: (4.416,14.316,-6.648)
OP2: (2.455,12.774,-7.266)
C3': (1.742,16.911,-10.268)
C1': (2.928,16.739,-12.264)
C5': (3.449,15.317,-9.219)
O4': (3.878,16.538,-11.233)
C8: (3.867,16.528,-14.595)
O2': (0.506,16.836,-12.403)
C6: (4.073,13.105,-15.307)
C5: (3.927,14.433,-14.880)
C4: (3.413,14.630,-13.621)
P: (2.979,14.128,-6.962)
C4': (3.204,16.606,-9.954)
C2': (1.592,16.326,-11.666)
C2: (3.218,12.463,-13.282)
N1: (3.700,12.117,-14.469)
N3: (3.037,13.671,-12.767)
N6: (4.560,12.775,-16.506)
N7: (4.212,15.643,-15.491)
N9: (3.365,15.991,-13.444)
O5': (2.581,15.155,-8.101)
O3': (1.564,18.330,-10.330)
OP2: (2.455,12.774,-7.266)
C3': (1.742,16.911,-10.268)
C1': (2.928,16.739,-12.264)
C5': (3.449,15.317,-9.219)
O4': (3.878,16.538,-11.233)
C8: (3.867,16.528,-14.595)
O2': (0.506,16.836,-12.403)
C6: (4.073,13.105,-15.307)
C5: (3.927,14.433,-14.880)
C4: (3.413,14.630,-13.621)
P: (2.979,14.128,-6.962)
C4': (3.204,16.606,-9.954)
C2': (1.592,16.326,-11.666)
C2: (3.218,12.463,-13.282)
N1: (3.700,12.117,-14.469)
N3: (3.037,13.671,-12.767)
N6: (4.560,12.775,-16.506)
N7: (4.212,15.643,-15.491)
N9: (3.365,15.991,-13.444)
O5': (2.581,15.155,-8.101)
O3': (1.564,18.330,-10.330)
C4: (-2.559,13.557,-7.789)
N3: (-3.870,13.920,-8.003)
OP1: (1.371,20.634,-9.375)
OP2: (1.593,18.662,-7.829)
C2: (-4.305,15.042,-8.667)
C1': (-3.776,17.073,-9.898)
C3': (-3.266,19.242,-9.103)
O5': (-0.489,18.930,-9.218)
O4': (-2.670,17.567,-10.617)
C5': (-1.101,19.363,-10.412)
P: (1.053,19.218,-9.086)
C4': (-2.551,18.991,-10.412)
C2': (-4.419,18.247,-9.156)
O2': (-5.483,18.750,-9.949)
N1: (-3.323,15.879,-9.141)
O4: (-2.314,12.516,-7.177)
O2: (-5.484,15.305,-8.825)
C6: (-1.996,15.570,-8.971)
C5: (-1.594,14.471,-8.324)
O3': (-3.656,20.596,-8.955)
N3: (-3.870,13.920,-8.003)
OP1: (1.371,20.634,-9.375)
OP2: (1.593,18.662,-7.829)
C2: (-4.305,15.042,-8.667)
C1': (-3.776,17.073,-9.898)
C3': (-3.266,19.242,-9.103)
O5': (-0.489,18.930,-9.218)
O4': (-2.670,17.567,-10.617)
C5': (-1.101,19.363,-10.412)
P: (1.053,19.218,-9.086)
C4': (-2.551,18.991,-10.412)
C2': (-4.419,18.247,-9.156)
O2': (-5.483,18.750,-9.949)
N1: (-3.323,15.879,-9.141)
O4: (-2.314,12.516,-7.177)
O2: (-5.484,15.305,-8.825)
C6: (-1.996,15.570,-8.971)
C5: (-1.594,14.471,-8.324)
O3': (-3.656,20.596,-8.955)
Image (generated by PyMOL):