Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11964:11984
Extra
PDB:
ATOM 1 O3' C A1963 -2.118 -16.731 117.627 1.00 44.12 O
ATOM 2 P G A1964 -3.159 -16.844 118.853 1.00 48.16 P
ATOM 3 OP1 G A1964 -2.808 -18.074 119.609 1.00 48.35 O
ATOM 4 OP2 G A1964 -4.540 -16.718 118.279 1.00 48.22 O
ATOM 5 O5' G A1964 -2.804 -15.586 119.758 1.00 48.36 O
ATOM 6 C5' G A1964 -1.792 -15.701 120.736 1.00 48.50 C
ATOM 7 C4' G A1964 -2.280 -15.356 122.119 1.00 49.02 C
ATOM 8 O4' G A1964 -3.070 -14.145 122.073 1.00 49.13 O
ATOM 9 C3' G A1964 -3.136 -16.410 122.811 1.00 49.39 C
ATOM 10 O3' G A1964 -2.712 -16.564 124.153 1.00 49.77 O
ATOM 11 C2' G A1964 -4.522 -15.797 122.824 1.00 49.62 C
ATOM 12 O2' G A1964 -5.299 -16.200 123.929 1.00 50.12 O
ATOM 13 C1' G A1964 -4.205 -14.309 122.878 1.00 49.58 C
ATOM 14 N9 G A1964 -5.276 -13.451 122.365 1.00 49.60 N
ATOM 15 C8 G A1964 -6.296 -13.858 121.572 1.00 49.52 C
ATOM 16 N7 G A1964 -7.110 -12.894 121.291 1.00 49.59 N
ATOM 17 C5 G A1964 -6.618 -11.791 121.940 1.00 49.72 C
ATOM 18 C6 G A1964 -7.098 -10.456 121.999 1.00 49.86 C
ATOM 19 O6 G A1964 -8.101 -9.946 121.470 1.00 49.89 O
ATOM 20 N1 G A1964 -6.269 -9.647 122.774 1.00 49.98 N
ATOM 21 C2 G A1964 -5.138 -10.051 123.415 1.00 49.98 C
ATOM 22 N2 G A1964 -4.488 -9.111 124.121 1.00 50.13 N
ATOM 23 N3 G A1964 -4.719 -11.312 123.358 1.00 49.85 N
ATOM 24 C4 G A1964 -5.484 -12.121 122.610 1.00 49.73 C
ATOM 25 P A A1965 -1.572 -17.624 124.520 1.00 49.30 P
ATOM 26 OP1 A A1965 -1.767 -18.824 123.674 1.00 49.08 O
ATOM 27 OP2 A A1965 -1.589 -17.782 125.993 1.00 49.81 O
ATOM 28 O5' A A1965 -0.259 -16.842 124.063 1.00 48.94 O
TER
ATOM 1 O3' U B1983 0.300 -1.475 124.401 1.00 52.18 O
ATOM 2 P G B1984 -1.067 -1.850 125.130 1.00 54.24 P
ATOM 3 OP1 G B1984 -2.044 -0.833 124.685 1.00 54.33 O
ATOM 4 OP2 G B1984 -0.784 -1.997 126.568 1.00 54.69 O
ATOM 5 O5' G B1984 -1.431 -3.258 124.513 1.00 53.98 O
ATOM 6 C5' G B1984 -1.640 -3.415 123.126 1.00 53.53 C
ATOM 7 C4' G B1984 -2.278 -4.733 122.838 1.00 53.46 C
ATOM 8 O4' G B1984 -1.328 -5.805 123.139 1.00 53.34 O
ATOM 9 C3' G B1984 -3.523 -5.025 123.675 1.00 53.92 C
ATOM 10 O3' G B1984 -4.443 -5.801 122.897 1.00 53.78 O
ATOM 11 C2' G B1984 -2.956 -5.883 124.787 1.00 54.16 C
ATOM 12 O2' G B1984 -3.910 -6.673 125.452 1.00 54.50 O
ATOM 13 C1' G B1984 -1.945 -6.722 124.003 1.00 53.68 C
ATOM 14 N9 G B1984 -0.917 -7.382 124.820 1.00 53.77 N
ATOM 15 C8 G B1984 0.107 -6.784 125.484 1.00 53.87 C
ATOM 16 N7 G B1984 0.848 -7.601 126.172 1.00 53.96 N
ATOM 17 C5 G B1984 0.283 -8.810 125.934 1.00 53.92 C
ATOM 18 C6 G B1984 0.693 -10.058 126.420 1.00 53.99 C
ATOM 19 O6 G B1984 1.665 -10.232 127.138 1.00 54.10 O
ATOM 20 N1 G B1984 -0.095 -11.133 126.008 1.00 53.93 N
ATOM 21 C2 G B1984 -1.174 -10.965 125.186 1.00 53.82 C
ATOM 22 N2 G B1984 -1.815 -12.103 124.887 1.00 53.79 N
ATOM 23 N3 G B1984 -1.579 -9.774 124.715 1.00 53.75 N
ATOM 24 C4 G B1984 -0.801 -8.728 125.112 1.00 53.80 C
ATOM 25 P A B1985 -6.015 -5.790 123.228 1.00 46.48 P
ATOM 26 OP1 A B1985 -6.330 -4.518 123.926 1.00 46.84 O
ATOM 27 OP2 A B1985 -6.308 -7.049 123.911 1.00 46.69 O
ATOM 28 O5' A B1985 -6.672 -5.804 121.785 1.00 46.13 O
TER
ATOM 2 P G A1964 -3.159 -16.844 118.853 1.00 48.16 P
ATOM 3 OP1 G A1964 -2.808 -18.074 119.609 1.00 48.35 O
ATOM 4 OP2 G A1964 -4.540 -16.718 118.279 1.00 48.22 O
ATOM 5 O5' G A1964 -2.804 -15.586 119.758 1.00 48.36 O
ATOM 6 C5' G A1964 -1.792 -15.701 120.736 1.00 48.50 C
ATOM 7 C4' G A1964 -2.280 -15.356 122.119 1.00 49.02 C
ATOM 8 O4' G A1964 -3.070 -14.145 122.073 1.00 49.13 O
ATOM 9 C3' G A1964 -3.136 -16.410 122.811 1.00 49.39 C
ATOM 10 O3' G A1964 -2.712 -16.564 124.153 1.00 49.77 O
ATOM 11 C2' G A1964 -4.522 -15.797 122.824 1.00 49.62 C
ATOM 12 O2' G A1964 -5.299 -16.200 123.929 1.00 50.12 O
ATOM 13 C1' G A1964 -4.205 -14.309 122.878 1.00 49.58 C
ATOM 14 N9 G A1964 -5.276 -13.451 122.365 1.00 49.60 N
ATOM 15 C8 G A1964 -6.296 -13.858 121.572 1.00 49.52 C
ATOM 16 N7 G A1964 -7.110 -12.894 121.291 1.00 49.59 N
ATOM 17 C5 G A1964 -6.618 -11.791 121.940 1.00 49.72 C
ATOM 18 C6 G A1964 -7.098 -10.456 121.999 1.00 49.86 C
ATOM 19 O6 G A1964 -8.101 -9.946 121.470 1.00 49.89 O
ATOM 20 N1 G A1964 -6.269 -9.647 122.774 1.00 49.98 N
ATOM 21 C2 G A1964 -5.138 -10.051 123.415 1.00 49.98 C
ATOM 22 N2 G A1964 -4.488 -9.111 124.121 1.00 50.13 N
ATOM 23 N3 G A1964 -4.719 -11.312 123.358 1.00 49.85 N
ATOM 24 C4 G A1964 -5.484 -12.121 122.610 1.00 49.73 C
ATOM 25 P A A1965 -1.572 -17.624 124.520 1.00 49.30 P
ATOM 26 OP1 A A1965 -1.767 -18.824 123.674 1.00 49.08 O
ATOM 27 OP2 A A1965 -1.589 -17.782 125.993 1.00 49.81 O
ATOM 28 O5' A A1965 -0.259 -16.842 124.063 1.00 48.94 O
TER
ATOM 1 O3' U B1983 0.300 -1.475 124.401 1.00 52.18 O
ATOM 2 P G B1984 -1.067 -1.850 125.130 1.00 54.24 P
ATOM 3 OP1 G B1984 -2.044 -0.833 124.685 1.00 54.33 O
ATOM 4 OP2 G B1984 -0.784 -1.997 126.568 1.00 54.69 O
ATOM 5 O5' G B1984 -1.431 -3.258 124.513 1.00 53.98 O
ATOM 6 C5' G B1984 -1.640 -3.415 123.126 1.00 53.53 C
ATOM 7 C4' G B1984 -2.278 -4.733 122.838 1.00 53.46 C
ATOM 8 O4' G B1984 -1.328 -5.805 123.139 1.00 53.34 O
ATOM 9 C3' G B1984 -3.523 -5.025 123.675 1.00 53.92 C
ATOM 10 O3' G B1984 -4.443 -5.801 122.897 1.00 53.78 O
ATOM 11 C2' G B1984 -2.956 -5.883 124.787 1.00 54.16 C
ATOM 12 O2' G B1984 -3.910 -6.673 125.452 1.00 54.50 O
ATOM 13 C1' G B1984 -1.945 -6.722 124.003 1.00 53.68 C
ATOM 14 N9 G B1984 -0.917 -7.382 124.820 1.00 53.77 N
ATOM 15 C8 G B1984 0.107 -6.784 125.484 1.00 53.87 C
ATOM 16 N7 G B1984 0.848 -7.601 126.172 1.00 53.96 N
ATOM 17 C5 G B1984 0.283 -8.810 125.934 1.00 53.92 C
ATOM 18 C6 G B1984 0.693 -10.058 126.420 1.00 53.99 C
ATOM 19 O6 G B1984 1.665 -10.232 127.138 1.00 54.10 O
ATOM 20 N1 G B1984 -0.095 -11.133 126.008 1.00 53.93 N
ATOM 21 C2 G B1984 -1.174 -10.965 125.186 1.00 53.82 C
ATOM 22 N2 G B1984 -1.815 -12.103 124.887 1.00 53.79 N
ATOM 23 N3 G B1984 -1.579 -9.774 124.715 1.00 53.75 N
ATOM 24 C4 G B1984 -0.801 -8.728 125.112 1.00 53.80 C
ATOM 25 P A B1985 -6.015 -5.790 123.228 1.00 46.48 P
ATOM 26 OP1 A B1985 -6.330 -4.518 123.926 1.00 46.84 O
ATOM 27 OP2 A B1985 -6.308 -7.049 123.911 1.00 46.69 O
ATOM 28 O5' A B1985 -6.672 -5.804 121.785 1.00 46.13 O
TER
Atoms:
OP1: (-2.808,-18.074,119.609)
OP2: (-4.540,-16.718,118.279)
C3': (-3.136,-16.410,122.811)
C1': (-4.205,-14.309,122.878)
C5': (-1.792,-15.701,120.736)
O6: (-8.101,-9.946,121.470)
O4': (-3.070,-14.145,122.073)
C8: (-6.296,-13.858,121.572)
C2: (-5.138,-10.051,123.415)
C6: (-7.098,-10.456,121.999)
C5: (-6.618,-11.791,121.940)
C4: (-5.484,-12.121,122.610)
P: (-3.159,-16.844,118.853)
C4': (-2.280,-15.356,122.119)
C2': (-4.522,-15.797,122.824)
O2': (-5.299,-16.200,123.929)
N1: (-6.269,-9.647,122.774)
N2: (-4.488,-9.111,124.121)
N3: (-4.719,-11.312,123.358)
N7: (-7.110,-12.894,121.291)
N9: (-5.276,-13.451,122.365)
O5': (-2.804,-15.586,119.758)
O3': (-2.712,-16.564,124.153)
OP2: (-4.540,-16.718,118.279)
C3': (-3.136,-16.410,122.811)
C1': (-4.205,-14.309,122.878)
C5': (-1.792,-15.701,120.736)
O6: (-8.101,-9.946,121.470)
O4': (-3.070,-14.145,122.073)
C8: (-6.296,-13.858,121.572)
C2: (-5.138,-10.051,123.415)
C6: (-7.098,-10.456,121.999)
C5: (-6.618,-11.791,121.940)
C4: (-5.484,-12.121,122.610)
P: (-3.159,-16.844,118.853)
C4': (-2.280,-15.356,122.119)
C2': (-4.522,-15.797,122.824)
O2': (-5.299,-16.200,123.929)
N1: (-6.269,-9.647,122.774)
N2: (-4.488,-9.111,124.121)
N3: (-4.719,-11.312,123.358)
N7: (-7.110,-12.894,121.291)
N9: (-5.276,-13.451,122.365)
O5': (-2.804,-15.586,119.758)
O3': (-2.712,-16.564,124.153)
OP1: (-2.044,-0.833,124.685)
OP2: (-0.784,-1.997,126.568)
C3': (-3.523,-5.025,123.675)
C1': (-1.945,-6.722,124.003)
C5': (-1.640,-3.415,123.126)
O6: (1.665,-10.232,127.138)
O4': (-1.328,-5.805,123.139)
C8: (0.107,-6.784,125.484)
C2: (-1.174,-10.965,125.186)
C6: (0.693,-10.058,126.420)
C5: (0.283,-8.810,125.934)
C4: (-0.801,-8.728,125.112)
P: (-1.067,-1.850,125.130)
C4': (-2.278,-4.733,122.838)
C2': (-2.956,-5.883,124.787)
O2': (-3.910,-6.673,125.452)
N1: (-0.095,-11.133,126.008)
N2: (-1.815,-12.103,124.887)
N3: (-1.579,-9.774,124.715)
N7: (0.848,-7.601,126.172)
N9: (-0.917,-7.382,124.820)
O5': (-1.431,-3.258,124.513)
O3': (-4.443,-5.801,122.897)
OP2: (-0.784,-1.997,126.568)
C3': (-3.523,-5.025,123.675)
C1': (-1.945,-6.722,124.003)
C5': (-1.640,-3.415,123.126)
O6: (1.665,-10.232,127.138)
O4': (-1.328,-5.805,123.139)
C8: (0.107,-6.784,125.484)
C2: (-1.174,-10.965,125.186)
C6: (0.693,-10.058,126.420)
C5: (0.283,-8.810,125.934)
C4: (-0.801,-8.728,125.112)
P: (-1.067,-1.850,125.130)
C4': (-2.278,-4.733,122.838)
C2': (-2.956,-5.883,124.787)
O2': (-3.910,-6.673,125.452)
N1: (-0.095,-11.133,126.008)
N2: (-1.815,-12.103,124.887)
N3: (-1.579,-9.774,124.715)
N7: (0.848,-7.601,126.172)
N9: (-0.917,-7.382,124.820)
O5': (-1.431,-3.258,124.513)
O3': (-4.443,-5.801,122.897)
Image (generated by PyMOL):