ClaRNA

Doublet info:

Details

Nucleotide types: GG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1342:423

Extra

PDB:
ATOM 1 O3' A A 341 68.441 -3.404 89.041 1.00 35.22 O
ATOM 2 P G A 342 67.674 -4.106 90.221 1.00 36.29 P
ATOM 3 OP1 G A 342 67.394 -5.539 89.835 1.00 36.15 O
ATOM 4 OP2 G A 342 66.609 -3.256 90.528 1.00 36.23 O
ATOM 5 O5' G A 342 68.728 -3.994 91.416 1.00 36.65 O
ATOM 6 C5' G A 342 69.511 -5.084 91.831 1.00 36.81 C
ATOM 7 C4' G A 342 70.254 -4.745 93.082 1.00 37.16 C
ATOM 8 O4' G A 342 70.747 -3.385 93.012 1.00 37.26 O
ATOM 9 C3' G A 342 69.450 -4.716 94.331 1.00 37.30 C
ATOM 10 O3' G A 342 69.096 -5.980 94.776 1.00 37.31 O
ATOM 11 C2' G A 342 70.367 -3.963 95.271 1.00 37.64 C
ATOM 12 O2' G A 342 71.468 -4.775 95.618 1.00 37.86 O
ATOM 13 C1' G A 342 70.890 -2.875 94.333 1.00 37.56 C
ATOM 14 N9 G A 342 70.128 -1.617 94.455 1.00 37.53 N
ATOM 15 C8 G A 342 69.230 -1.230 93.559 1.00 37.24 C
ATOM 16 N7 G A 342 68.682 -0.114 93.855 1.00 37.28 N
ATOM 17 C5 G A 342 69.264 0.261 95.023 1.00 37.62 C
ATOM 18 C6 G A 342 69.026 1.441 95.785 1.00 37.82 C
ATOM 19 O6 G A 342 68.201 2.337 95.510 1.00 37.71 O
ATOM 20 N1 G A 342 69.830 1.543 96.893 1.00 38.18 N
ATOM 21 C2 G A 342 70.725 0.581 97.214 1.00 38.32 C
ATOM 22 N2 G A 342 71.387 0.808 98.367 1.00 38.70 N
ATOM 23 N3 G A 342 70.954 -0.524 96.488 1.00 38.13 N
ATOM 24 C4 G A 342 70.183 -0.637 95.398 1.00 37.78 C
ATOM 25 P C A 343 67.581 -6.240 95.116 1.00 37.75 P
ATOM 26 OP1 C A 343 67.443 -7.642 95.563 1.00 37.81 O
ATOM 27 OP2 C A 343 66.822 -5.788 93.941 1.00 37.42 O
ATOM 28 O5' C A 343 67.318 -5.246 96.339 1.00 37.99 O
TER

ATOM 1 O3' U B 22 78.750 2.015 105.151 1.00 46.46 O
ATOM 2 P G B 23 77.990 0.599 105.087 1.00 45.25 P
ATOM 3 OP1 G B 23 77.350 0.384 106.403 1.00 45.43 O
ATOM 4 OP2 G B 23 78.947 -0.409 104.637 1.00 45.36 O
ATOM 5 O5' G B 23 76.887 0.841 103.953 1.00 44.59 O
ATOM 6 C5' G B 23 75.722 1.617 104.219 1.00 44.37 C
ATOM 7 C4' G B 23 74.666 1.467 103.146 1.00 43.73 C
ATOM 8 O4' G B 23 75.182 1.854 101.860 1.00 43.57 O
ATOM 9 C3' G B 23 74.119 0.073 102.915 1.00 43.40 C
ATOM 10 O3' G B 23 73.129 -0.274 103.853 1.00 43.35 O
ATOM 11 C2' G B 23 73.561 0.193 101.529 1.00 42.87 C
ATOM 12 O2' G B 23 72.354 0.921 101.584 1.00 42.60 O
ATOM 13 C1' G B 23 74.612 1.063 100.863 1.00 43.07 C
ATOM 14 N9 G B 23 75.671 0.256 100.244 1.00 43.17 N
ATOM 15 C8 G B 23 76.964 0.089 100.676 1.00 43.67 C
ATOM 16 N7 G B 23 77.672 -0.699 99.927 1.00 43.66 N
ATOM 17 C5 G B 23 76.769 -1.095 98.966 1.00 43.11 C
ATOM 18 C6 G B 23 76.953 -1.967 97.890 1.00 42.88 C
ATOM 19 O6 G B 23 77.975 -2.558 97.576 1.00 43.12 O
ATOM 20 N1 G B 23 75.809 -2.121 97.116 1.00 42.35 N
ATOM 21 C2 G B 23 74.620 -1.513 97.388 1.00 42.07 C
ATOM 22 N2 G B 23 73.648 -1.820 96.522 1.00 41.59 N
ATOM 23 N3 G B 23 74.421 -0.694 98.403 1.00 42.29 N
ATOM 24 C4 G B 23 75.540 -0.521 99.130 1.00 42.80 C
ATOM 25 P G B 24 72.797 -1.807 104.142 1.00 45.47 P
ATOM 26 OP1 G B 24 71.740 -1.801 105.188 1.00 45.49 O
ATOM 27 OP2 G B 24 74.092 -2.509 104.439 1.00 45.87 O
ATOM 28 O5' G B 24 72.236 -2.321 102.725 1.00 44.89 O
TER

Atoms:
OP1: (67.394,-5.539,89.835)
OP2: (66.609,-3.256,90.528)
C3': (69.450,-4.716,94.331)
C1': (70.890,-2.875,94.333)
C5': (69.511,-5.084,91.831)
O6: (68.201,2.337,95.510)
O4': (70.747,-3.385,93.012)
C8: (69.230,-1.230,93.559)
C2: (70.725,0.581,97.214)
C6: (69.026,1.441,95.785)
C5: (69.264,0.261,95.023)
C4: (70.183,-0.637,95.398)
P: (67.674,-4.106,90.221)
C4': (70.254,-4.745,93.082)
C2': (70.367,-3.963,95.271)
O2': (71.468,-4.775,95.618)
N1: (69.830,1.543,96.893)
N2: (71.387,0.808,98.367)
N3: (70.954,-0.524,96.488)
N7: (68.682,-0.114,93.855)
N9: (70.128,-1.617,94.455)
O5': (68.728,-3.994,91.416)
O3': (69.096,-5.980,94.776)
OP1: (77.350,0.384,106.403)
OP2: (78.947,-0.409,104.637)
C3': (74.119,0.073,102.915)
C1': (74.612,1.063,100.863)
C5': (75.722,1.617,104.219)
O6: (77.975,-2.558,97.576)
O4': (75.182,1.854,101.860)
C8: (76.964,0.089,100.676)
C2: (74.620,-1.513,97.388)
C6: (76.953,-1.967,97.890)
C5: (76.769,-1.095,98.966)
C4: (75.540,-0.521,99.130)
P: (77.990,0.599,105.087)
C4': (74.666,1.467,103.146)
C2': (73.561,0.193,101.529)
O2': (72.354,0.921,101.584)
N1: (75.809,-2.121,97.116)
N2: (73.648,-1.820,96.522)
N3: (74.421,-0.694,98.403)
N7: (77.672,-0.699,99.927)
N9: (75.671,0.256,100.244)
O5': (76.887,0.841,103.953)
O3': (73.129,-0.274,103.853)
Image (generated by PyMOL):
PyMOL image
show in jmol