Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12053:12054
Extra
PDB:
ATOM 1 O3' C A2052 -0.441 -12.673 89.726 1.00 41.75 O
ATOM 2 P G A2053 -0.897 -11.757 88.510 1.00 46.37 P
ATOM 3 OP1 G A2053 0.320 -11.125 87.968 1.00 46.10 O
ATOM 4 OP2 G A2053 -1.962 -10.906 88.988 1.00 46.62 O
ATOM 5 O5' G A2053 -1.445 -12.802 87.473 1.00 46.36 O
ATOM 6 C5' G A2053 -2.689 -12.644 86.831 1.00 46.52 C
ATOM 7 C4' G A2053 -3.232 -13.990 86.495 1.00 46.60 C
ATOM 8 O4' G A2053 -3.703 -14.611 87.706 1.00 46.82 O
ATOM 9 C3' G A2053 -4.414 -14.041 85.571 1.00 46.74 C
ATOM 10 O3' G A2053 -4.051 -13.948 84.213 1.00 46.55 O
ATOM 11 C2' G A2053 -5.041 -15.369 85.933 1.00 46.92 C
ATOM 12 O2' G A2053 -4.280 -16.433 85.375 1.00 46.74 O
ATOM 13 C1' G A2053 -4.828 -15.392 87.442 1.00 47.02 C
ATOM 14 N9 G A2053 -5.968 -14.844 88.203 1.00 47.32 N
ATOM 15 C8 G A2053 -6.007 -13.811 89.086 1.00 47.42 C
ATOM 16 N7 G A2053 -7.179 -13.596 89.637 1.00 47.72 N
ATOM 17 C5 G A2053 -7.983 -14.564 89.068 1.00 47.83 C
ATOM 18 C6 G A2053 -9.373 -14.888 89.228 1.00 48.15 C
ATOM 19 O6 G A2053 -10.252 -14.344 89.938 1.00 48.42 O
ATOM 20 N1 G A2053 -9.728 -15.982 88.455 1.00 48.16 N
ATOM 21 C2 G A2053 -8.893 -16.644 87.634 1.00 47.91 C
ATOM 22 N2 G A2053 -9.345 -17.663 86.930 1.00 47.97 N
ATOM 23 N3 G A2053 -7.644 -16.355 87.459 1.00 47.62 N
ATOM 24 C4 G A2053 -7.237 -15.318 88.200 1.00 47.59 C
ATOM 25 P G A2054 -5.016 -13.181 83.194 1.00 45.45 P
ATOM 26 OP1 G A2054 -4.260 -12.908 81.968 1.00 45.21 O
ATOM 27 OP2 G A2054 -5.576 -12.055 83.916 1.00 45.62 O
ATOM 28 O5' G A2054 -6.135 -14.263 82.913 1.00 45.67 O
TER
ATOM 1 O3' G B2053 -4.051 -13.948 84.213 1.00 46.55 O
ATOM 2 P G B2054 -5.016 -13.181 83.194 1.00 45.45 P
ATOM 3 OP1 G B2054 -4.260 -12.908 81.968 1.00 45.21 O
ATOM 4 OP2 G B2054 -5.576 -12.055 83.916 1.00 45.62 O
ATOM 5 O5' G B2054 -6.135 -14.263 82.913 1.00 45.67 O
ATOM 6 C5' G B2054 -5.890 -15.371 82.068 1.00 45.58 C
ATOM 7 C4' G B2054 -7.074 -16.311 82.020 1.00 45.84 C
ATOM 8 O4' G B2054 -7.485 -16.644 83.360 1.00 46.03 O
ATOM 9 C3' G B2054 -8.353 -15.785 81.365 1.00 46.07 C
ATOM 10 O3' G B2054 -8.343 -15.935 79.975 1.00 45.99 O
ATOM 11 C2' G B2054 -9.409 -16.642 82.003 1.00 46.36 C
ATOM 12 O2' G B2054 -9.354 -17.947 81.445 1.00 46.35 O
ATOM 13 C1' G B2054 -8.894 -16.724 83.420 1.00 46.34 C
ATOM 14 N9 G B2054 -9.386 -15.620 84.263 1.00 46.49 N
ATOM 15 C8 G B2054 -8.606 -14.616 84.784 1.00 46.35 C
ATOM 16 N7 G B2054 -9.252 -13.785 85.533 1.00 46.54 N
ATOM 17 C5 G B2054 -10.540 -14.284 85.519 1.00 46.83 C
ATOM 18 C6 G B2054 -11.666 -13.771 86.173 1.00 47.14 C
ATOM 19 O6 G B2054 -11.652 -12.757 86.910 1.00 47.21 O
ATOM 20 N1 G B2054 -12.777 -14.588 85.940 1.00 47.39 N
ATOM 21 C2 G B2054 -12.777 -15.729 85.157 1.00 47.34 C
ATOM 22 N2 G B2054 -13.923 -16.408 84.973 1.00 47.61 N
ATOM 23 N3 G B2054 -11.719 -16.189 84.529 1.00 47.05 N
ATOM 24 C4 G B2054 -10.645 -15.422 84.759 1.00 46.81 C
ATOM 25 P C B2055 -8.825 -14.755 79.060 1.00 54.93 P
ATOM 26 OP1 C B2055 -8.295 -15.001 77.710 1.00 54.76 O
ATOM 27 OP2 C B2055 -8.449 -13.530 79.731 1.00 54.86 O
ATOM 28 O5' C B2055 -10.419 -14.904 79.090 1.00 55.29 O
TER
ATOM 2 P G A2053 -0.897 -11.757 88.510 1.00 46.37 P
ATOM 3 OP1 G A2053 0.320 -11.125 87.968 1.00 46.10 O
ATOM 4 OP2 G A2053 -1.962 -10.906 88.988 1.00 46.62 O
ATOM 5 O5' G A2053 -1.445 -12.802 87.473 1.00 46.36 O
ATOM 6 C5' G A2053 -2.689 -12.644 86.831 1.00 46.52 C
ATOM 7 C4' G A2053 -3.232 -13.990 86.495 1.00 46.60 C
ATOM 8 O4' G A2053 -3.703 -14.611 87.706 1.00 46.82 O
ATOM 9 C3' G A2053 -4.414 -14.041 85.571 1.00 46.74 C
ATOM 10 O3' G A2053 -4.051 -13.948 84.213 1.00 46.55 O
ATOM 11 C2' G A2053 -5.041 -15.369 85.933 1.00 46.92 C
ATOM 12 O2' G A2053 -4.280 -16.433 85.375 1.00 46.74 O
ATOM 13 C1' G A2053 -4.828 -15.392 87.442 1.00 47.02 C
ATOM 14 N9 G A2053 -5.968 -14.844 88.203 1.00 47.32 N
ATOM 15 C8 G A2053 -6.007 -13.811 89.086 1.00 47.42 C
ATOM 16 N7 G A2053 -7.179 -13.596 89.637 1.00 47.72 N
ATOM 17 C5 G A2053 -7.983 -14.564 89.068 1.00 47.83 C
ATOM 18 C6 G A2053 -9.373 -14.888 89.228 1.00 48.15 C
ATOM 19 O6 G A2053 -10.252 -14.344 89.938 1.00 48.42 O
ATOM 20 N1 G A2053 -9.728 -15.982 88.455 1.00 48.16 N
ATOM 21 C2 G A2053 -8.893 -16.644 87.634 1.00 47.91 C
ATOM 22 N2 G A2053 -9.345 -17.663 86.930 1.00 47.97 N
ATOM 23 N3 G A2053 -7.644 -16.355 87.459 1.00 47.62 N
ATOM 24 C4 G A2053 -7.237 -15.318 88.200 1.00 47.59 C
ATOM 25 P G A2054 -5.016 -13.181 83.194 1.00 45.45 P
ATOM 26 OP1 G A2054 -4.260 -12.908 81.968 1.00 45.21 O
ATOM 27 OP2 G A2054 -5.576 -12.055 83.916 1.00 45.62 O
ATOM 28 O5' G A2054 -6.135 -14.263 82.913 1.00 45.67 O
TER
ATOM 1 O3' G B2053 -4.051 -13.948 84.213 1.00 46.55 O
ATOM 2 P G B2054 -5.016 -13.181 83.194 1.00 45.45 P
ATOM 3 OP1 G B2054 -4.260 -12.908 81.968 1.00 45.21 O
ATOM 4 OP2 G B2054 -5.576 -12.055 83.916 1.00 45.62 O
ATOM 5 O5' G B2054 -6.135 -14.263 82.913 1.00 45.67 O
ATOM 6 C5' G B2054 -5.890 -15.371 82.068 1.00 45.58 C
ATOM 7 C4' G B2054 -7.074 -16.311 82.020 1.00 45.84 C
ATOM 8 O4' G B2054 -7.485 -16.644 83.360 1.00 46.03 O
ATOM 9 C3' G B2054 -8.353 -15.785 81.365 1.00 46.07 C
ATOM 10 O3' G B2054 -8.343 -15.935 79.975 1.00 45.99 O
ATOM 11 C2' G B2054 -9.409 -16.642 82.003 1.00 46.36 C
ATOM 12 O2' G B2054 -9.354 -17.947 81.445 1.00 46.35 O
ATOM 13 C1' G B2054 -8.894 -16.724 83.420 1.00 46.34 C
ATOM 14 N9 G B2054 -9.386 -15.620 84.263 1.00 46.49 N
ATOM 15 C8 G B2054 -8.606 -14.616 84.784 1.00 46.35 C
ATOM 16 N7 G B2054 -9.252 -13.785 85.533 1.00 46.54 N
ATOM 17 C5 G B2054 -10.540 -14.284 85.519 1.00 46.83 C
ATOM 18 C6 G B2054 -11.666 -13.771 86.173 1.00 47.14 C
ATOM 19 O6 G B2054 -11.652 -12.757 86.910 1.00 47.21 O
ATOM 20 N1 G B2054 -12.777 -14.588 85.940 1.00 47.39 N
ATOM 21 C2 G B2054 -12.777 -15.729 85.157 1.00 47.34 C
ATOM 22 N2 G B2054 -13.923 -16.408 84.973 1.00 47.61 N
ATOM 23 N3 G B2054 -11.719 -16.189 84.529 1.00 47.05 N
ATOM 24 C4 G B2054 -10.645 -15.422 84.759 1.00 46.81 C
ATOM 25 P C B2055 -8.825 -14.755 79.060 1.00 54.93 P
ATOM 26 OP1 C B2055 -8.295 -15.001 77.710 1.00 54.76 O
ATOM 27 OP2 C B2055 -8.449 -13.530 79.731 1.00 54.86 O
ATOM 28 O5' C B2055 -10.419 -14.904 79.090 1.00 55.29 O
TER
Atoms:
OP1: (0.320,-11.125,87.968)
OP2: (-1.962,-10.906,88.988)
C3': (-4.414,-14.041,85.571)
C1': (-4.828,-15.392,87.442)
C5': (-2.689,-12.644,86.831)
O6: (-10.252,-14.344,89.938)
O4': (-3.703,-14.611,87.706)
C8: (-6.007,-13.811,89.086)
C2: (-8.893,-16.644,87.634)
C6: (-9.373,-14.888,89.228)
C5: (-7.983,-14.564,89.068)
C4: (-7.237,-15.318,88.200)
P: (-0.897,-11.757,88.510)
C4': (-3.232,-13.990,86.495)
C2': (-5.041,-15.369,85.933)
O2': (-4.280,-16.433,85.375)
N1: (-9.728,-15.982,88.455)
N2: (-9.345,-17.663,86.930)
N3: (-7.644,-16.355,87.459)
N7: (-7.179,-13.596,89.637)
N9: (-5.968,-14.844,88.203)
O5': (-1.445,-12.802,87.473)
O3': (-4.051,-13.948,84.213)
OP2: (-1.962,-10.906,88.988)
C3': (-4.414,-14.041,85.571)
C1': (-4.828,-15.392,87.442)
C5': (-2.689,-12.644,86.831)
O6: (-10.252,-14.344,89.938)
O4': (-3.703,-14.611,87.706)
C8: (-6.007,-13.811,89.086)
C2: (-8.893,-16.644,87.634)
C6: (-9.373,-14.888,89.228)
C5: (-7.983,-14.564,89.068)
C4: (-7.237,-15.318,88.200)
P: (-0.897,-11.757,88.510)
C4': (-3.232,-13.990,86.495)
C2': (-5.041,-15.369,85.933)
O2': (-4.280,-16.433,85.375)
N1: (-9.728,-15.982,88.455)
N2: (-9.345,-17.663,86.930)
N3: (-7.644,-16.355,87.459)
N7: (-7.179,-13.596,89.637)
N9: (-5.968,-14.844,88.203)
O5': (-1.445,-12.802,87.473)
O3': (-4.051,-13.948,84.213)
OP1: (-4.260,-12.908,81.968)
OP2: (-5.576,-12.055,83.916)
C3': (-8.353,-15.785,81.365)
C1': (-8.894,-16.724,83.420)
C5': (-5.890,-15.371,82.068)
O6: (-11.652,-12.757,86.910)
O4': (-7.485,-16.644,83.360)
C8: (-8.606,-14.616,84.784)
C2: (-12.777,-15.729,85.157)
C6: (-11.666,-13.771,86.173)
C5: (-10.540,-14.284,85.519)
C4: (-10.645,-15.422,84.759)
P: (-5.016,-13.181,83.194)
C4': (-7.074,-16.311,82.020)
C2': (-9.409,-16.642,82.003)
O2': (-9.354,-17.947,81.445)
N1: (-12.777,-14.588,85.940)
N2: (-13.923,-16.408,84.973)
N3: (-11.719,-16.189,84.529)
N7: (-9.252,-13.785,85.533)
N9: (-9.386,-15.620,84.263)
O5': (-6.135,-14.263,82.913)
O3': (-8.343,-15.935,79.975)
OP2: (-5.576,-12.055,83.916)
C3': (-8.353,-15.785,81.365)
C1': (-8.894,-16.724,83.420)
C5': (-5.890,-15.371,82.068)
O6: (-11.652,-12.757,86.910)
O4': (-7.485,-16.644,83.360)
C8: (-8.606,-14.616,84.784)
C2: (-12.777,-15.729,85.157)
C6: (-11.666,-13.771,86.173)
C5: (-10.540,-14.284,85.519)
C4: (-10.645,-15.422,84.759)
P: (-5.016,-13.181,83.194)
C4': (-7.074,-16.311,82.020)
C2': (-9.409,-16.642,82.003)
O2': (-9.354,-17.947,81.445)
N1: (-12.777,-14.588,85.940)
N2: (-13.923,-16.408,84.973)
N3: (-11.719,-16.189,84.529)
N7: (-9.252,-13.785,85.533)
N9: (-9.386,-15.620,84.263)
O5': (-6.135,-14.263,82.913)
O3': (-8.343,-15.935,79.975)
Image (generated by PyMOL):