ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3SLM:A48:A49

Extra

PDB:
ATOM 1 O3' C A 47 -10.626 -1.297 35.768 1.00 45.62 O
ATOM 2 P U A 48 -12.045 -0.587 36.087 1.00 54.65 P
ATOM 3 OP1 U A 48 -11.837 0.288 37.271 1.00 53.40 O
ATOM 4 OP2 U A 48 -13.070 -1.664 36.158 1.00 33.69 O
ATOM 5 O5' U A 48 -12.303 0.308 34.802 1.00 38.37 O
ATOM 6 C5' U A 48 -11.349 1.267 34.400 1.00 36.42 C
ATOM 7 C4' U A 48 -11.966 2.617 34.184 1.00 39.63 C
ATOM 8 O4' U A 48 -13.387 2.581 34.464 1.00 43.70 O
ATOM 9 C3' U A 48 -11.448 3.722 35.073 1.00 40.06 C
ATOM 10 O3' U A 48 -10.197 4.211 34.636 1.00 38.25 O
ATOM 11 C2' U A 48 -12.576 4.750 35.006 1.00 38.45 C
ATOM 12 O2' U A 48 -12.509 5.488 33.796 1.00 41.26 O
ATOM 13 C1' U A 48 -13.808 3.846 34.940 1.00 40.69 C
ATOM 14 N1 U A 48 -14.435 3.664 36.259 1.00 49.94 N
ATOM 15 C2 U A 48 -15.599 4.360 36.537 1.00 50.35 C
ATOM 16 O2 U A 48 -16.123 5.128 35.741 1.00 52.34 O
ATOM 17 N3 U A 48 -16.117 4.112 37.790 1.00 49.86 N
ATOM 18 C4 U A 48 -15.610 3.262 38.761 1.00 44.43 C
ATOM 19 O4 U A 48 -16.185 3.138 39.846 1.00 40.40 O
ATOM 20 C5 U A 48 -14.410 2.583 38.384 1.00 48.98 C
ATOM 21 C6 U A 48 -13.881 2.799 37.177 1.00 48.75 C
ATOM 22 P A A 49 -9.212 4.938 35.660 1.00 32.80 P
ATOM 23 OP1 A A 49 -9.344 4.241 36.963 1.00 33.12 O
ATOM 24 OP2 A A 49 -9.511 6.389 35.588 1.00 38.60 O
ATOM 25 O5' A A 49 -7.785 4.646 35.032 1.00 33.55 O
TER

ATOM 1 O3' U B 48 -10.197 4.211 34.636 1.00 38.25 O
ATOM 2 P A B 49 -9.212 4.938 35.660 1.00 32.80 P
ATOM 3 OP1 A B 49 -9.344 4.241 36.963 1.00 33.12 O
ATOM 4 OP2 A B 49 -9.511 6.389 35.588 1.00 38.60 O
ATOM 5 O5' A B 49 -7.785 4.646 35.032 1.00 33.55 O
ATOM 6 C5' A B 49 -7.421 3.327 34.649 1.00 33.26 C
ATOM 7 C4' A B 49 -6.478 3.334 33.485 1.00 31.11 C
ATOM 8 O4' A B 49 -7.172 3.848 32.314 1.00 35.85 O
ATOM 9 C3' A B 49 -5.232 4.210 33.663 1.00 30.86 C
ATOM 10 O3' A B 49 -4.120 3.593 33.036 1.00 37.57 O
ATOM 11 C2' A B 49 -5.577 5.455 32.871 1.00 27.25 C
ATOM 12 O2' A B 49 -4.454 6.148 32.383 1.00 33.64 O
ATOM 13 C1' A B 49 -6.386 4.869 31.732 1.00 29.94 C
ATOM 14 N9 A B 49 -7.255 5.843 31.085 1.00 29.46 N
ATOM 15 C8 A B 49 -8.343 6.482 31.615 1.00 31.49 C
ATOM 16 N7 A B 49 -8.880 7.341 30.793 1.00 31.94 N
ATOM 17 C5 A B 49 -8.086 7.274 29.660 1.00 28.10 C
ATOM 18 C6 A B 49 -8.141 7.956 28.437 1.00 29.72 C
ATOM 19 N6 A B 49 -9.081 8.869 28.144 1.00 29.93 N
ATOM 20 N1 A B 49 -7.191 7.657 27.521 1.00 29.07 N
ATOM 21 C2 A B 49 -6.259 6.744 27.824 1.00 31.16 C
ATOM 22 N3 A B 49 -6.111 6.041 28.947 1.00 32.74 N
ATOM 23 C4 A B 49 -7.069 6.362 29.834 1.00 28.71 C
ATOM 24 P U B 50 -3.073 2.721 33.875 1.00 38.24 P
ATOM 25 OP1 U B 50 -3.833 2.000 34.931 1.00 37.93 O
ATOM 26 OP2 U B 50 -1.967 3.614 34.278 1.00 34.86 O
ATOM 27 O5' U B 50 -2.568 1.702 32.776 1.00 38.89 O
TER

Atoms:
C4: (-15.610,3.262,38.761)
N3: (-16.117,4.112,37.790)
OP1: (-11.837,0.288,37.271)
OP2: (-13.070,-1.664,36.158)
C2: (-15.599,4.360,36.537)
C1': (-13.808,3.846,34.940)
C3': (-11.448,3.722,35.073)
O5': (-12.303,0.308,34.802)
O4': (-13.387,2.581,34.464)
C5': (-11.349,1.267,34.400)
P: (-12.045,-0.587,36.087)
C4': (-11.966,2.617,34.184)
C2': (-12.576,4.750,35.006)
O2': (-12.509,5.488,33.796)
N1: (-14.435,3.664,36.259)
O4: (-16.185,3.138,39.846)
O2: (-16.123,5.128,35.741)
C6: (-13.881,2.799,37.177)
C5: (-14.410,2.583,38.384)
O3': (-10.197,4.211,34.636)
OP1: (-9.344,4.241,36.963)
OP2: (-9.511,6.389,35.588)
C3': (-5.232,4.210,33.663)
C1': (-6.386,4.869,31.732)
C5': (-7.421,3.327,34.649)
O4': (-7.172,3.848,32.314)
C8: (-8.343,6.482,31.615)
O2': (-4.454,6.148,32.383)
C6: (-8.141,7.956,28.437)
C5: (-8.086,7.274,29.660)
C4: (-7.069,6.362,29.834)
P: (-9.212,4.938,35.660)
C4': (-6.478,3.334,33.485)
C2': (-5.577,5.455,32.871)
C2: (-6.259,6.744,27.824)
N1: (-7.191,7.657,27.521)
N3: (-6.111,6.041,28.947)
N6: (-9.081,8.869,28.144)
N7: (-8.880,7.341,30.793)
N9: (-7.255,5.843,31.085)
O5': (-7.785,4.646,35.032)
O3': (-4.120,3.593,33.036)
Image (generated by PyMOL):
PyMOL image
show in jmol