Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3K5Y:B5:B6
Extra
PDB:
ATOM 1 O3' C A 4 -11.728 -29.188 -1.287 1.00 66.15 O
ATOM 2 P C A 5 -11.650 -29.286 0.308 1.00 59.09 P
ATOM 3 OP1 C A 5 -11.166 -27.994 0.838 1.00 63.04 O
ATOM 4 OP2 C A 5 -10.902 -30.528 0.669 1.00 51.22 O
ATOM 5 O5' C A 5 -13.152 -29.550 0.755 1.00 55.25 O
ATOM 6 C5' C A 5 -14.277 -28.894 0.158 1.00 54.13 C
ATOM 7 C4' C A 5 -15.572 -29.496 0.690 1.00 55.03 C
ATOM 8 O4' C A 5 -15.974 -30.615 -0.144 1.00 55.50 O
ATOM 9 C3' C A 5 -15.492 -30.091 2.094 1.00 54.93 C
ATOM 10 O3' C A 5 -15.624 -29.085 3.093 1.00 58.41 O
ATOM 11 C2' C A 5 -16.677 -31.058 2.074 1.00 60.97 C
ATOM 12 O2' C A 5 -17.931 -30.419 2.241 1.00 67.53 O
ATOM 13 C1' C A 5 -16.559 -31.624 0.661 1.00 57.37 C
ATOM 14 N1 C A 5 -15.724 -32.865 0.608 1.00 59.75 N
ATOM 15 C2 C A 5 -16.361 -34.107 0.691 1.00 66.43 C
ATOM 16 O2 C A 5 -17.595 -34.140 0.799 1.00 66.87 O
ATOM 17 N3 C A 5 -15.612 -35.238 0.651 1.00 69.16 N
ATOM 18 C4 C A 5 -14.287 -35.164 0.539 1.00 68.27 C
ATOM 19 N4 C A 5 -13.605 -36.314 0.501 1.00 73.77 N
ATOM 20 C5 C A 5 -13.613 -33.906 0.457 1.00 59.81 C
ATOM 21 C6 C A 5 -14.364 -32.795 0.492 1.00 56.91 C
ATOM 22 P A A 6 -14.949 -29.268 4.538 1.00 55.38 P
ATOM 23 OP1 A A 6 -13.805 -30.209 4.422 1.00 60.61 O
ATOM 24 OP2 A A 6 -16.037 -29.531 5.509 1.00 62.99 O
ATOM 25 O5' A A 6 -14.361 -27.816 4.834 1.00 57.20 O
TER
ATOM 1 O3' C B 5 -15.624 -29.085 3.093 1.00 58.41 O
ATOM 2 P A B 6 -14.949 -29.268 4.538 1.00 55.38 P
ATOM 3 OP1 A B 6 -13.805 -30.209 4.422 1.00 60.61 O
ATOM 4 OP2 A B 6 -16.037 -29.531 5.509 1.00 62.99 O
ATOM 5 O5' A B 6 -14.361 -27.816 4.834 1.00 57.20 O
ATOM 6 C5' A B 6 -13.206 -27.353 4.134 1.00 56.91 C
ATOM 7 C4' A B 6 -13.423 -25.940 3.617 1.00 57.92 C
ATOM 8 O4' A B 6 -14.303 -25.969 2.464 1.00 55.06 O
ATOM 9 C3' A B 6 -14.097 -24.975 4.589 1.00 55.93 C
ATOM 10 O3' A B 6 -13.137 -24.387 5.466 1.00 55.72 O
ATOM 11 C2' A B 6 -14.602 -23.923 3.624 1.00 52.47 C
ATOM 12 O2' A B 6 -13.560 -23.049 3.239 1.00 59.00 O
ATOM 13 C1' A B 6 -15.032 -24.756 2.421 1.00 50.05 C
ATOM 14 N9 A B 6 -16.467 -25.031 2.416 1.00 56.32 N
ATOM 15 C8 A B 6 -17.095 -26.210 2.725 1.00 54.26 C
ATOM 16 N7 A B 6 -18.401 -26.147 2.634 1.00 54.42 N
ATOM 17 C5 A B 6 -18.650 -24.842 2.246 1.00 57.67 C
ATOM 18 C6 A B 6 -19.842 -24.141 1.977 1.00 51.86 C
ATOM 19 N6 A B 6 -21.052 -24.695 2.075 1.00 48.85 N
ATOM 20 N1 A B 6 -19.735 -22.846 1.608 1.00 46.04 N
ATOM 21 C2 A B 6 -18.520 -22.293 1.523 1.00 50.24 C
ATOM 22 N3 A B 6 -17.327 -22.849 1.753 1.00 49.71 N
ATOM 23 C4 A B 6 -17.465 -24.138 2.112 1.00 57.99 C
ATOM 24 P U B 7 -13.441 -24.285 7.027 1.00 70.37 P
ATOM 25 OP1 U B 7 -12.330 -23.534 7.667 1.00 76.61 O
ATOM 26 OP2 U B 7 -13.781 -25.647 7.509 1.00 65.65 O
ATOM 27 O5' U B 7 -14.764 -23.410 7.091 1.00 58.07 O
TER
ATOM 2 P C A 5 -11.650 -29.286 0.308 1.00 59.09 P
ATOM 3 OP1 C A 5 -11.166 -27.994 0.838 1.00 63.04 O
ATOM 4 OP2 C A 5 -10.902 -30.528 0.669 1.00 51.22 O
ATOM 5 O5' C A 5 -13.152 -29.550 0.755 1.00 55.25 O
ATOM 6 C5' C A 5 -14.277 -28.894 0.158 1.00 54.13 C
ATOM 7 C4' C A 5 -15.572 -29.496 0.690 1.00 55.03 C
ATOM 8 O4' C A 5 -15.974 -30.615 -0.144 1.00 55.50 O
ATOM 9 C3' C A 5 -15.492 -30.091 2.094 1.00 54.93 C
ATOM 10 O3' C A 5 -15.624 -29.085 3.093 1.00 58.41 O
ATOM 11 C2' C A 5 -16.677 -31.058 2.074 1.00 60.97 C
ATOM 12 O2' C A 5 -17.931 -30.419 2.241 1.00 67.53 O
ATOM 13 C1' C A 5 -16.559 -31.624 0.661 1.00 57.37 C
ATOM 14 N1 C A 5 -15.724 -32.865 0.608 1.00 59.75 N
ATOM 15 C2 C A 5 -16.361 -34.107 0.691 1.00 66.43 C
ATOM 16 O2 C A 5 -17.595 -34.140 0.799 1.00 66.87 O
ATOM 17 N3 C A 5 -15.612 -35.238 0.651 1.00 69.16 N
ATOM 18 C4 C A 5 -14.287 -35.164 0.539 1.00 68.27 C
ATOM 19 N4 C A 5 -13.605 -36.314 0.501 1.00 73.77 N
ATOM 20 C5 C A 5 -13.613 -33.906 0.457 1.00 59.81 C
ATOM 21 C6 C A 5 -14.364 -32.795 0.492 1.00 56.91 C
ATOM 22 P A A 6 -14.949 -29.268 4.538 1.00 55.38 P
ATOM 23 OP1 A A 6 -13.805 -30.209 4.422 1.00 60.61 O
ATOM 24 OP2 A A 6 -16.037 -29.531 5.509 1.00 62.99 O
ATOM 25 O5' A A 6 -14.361 -27.816 4.834 1.00 57.20 O
TER
ATOM 1 O3' C B 5 -15.624 -29.085 3.093 1.00 58.41 O
ATOM 2 P A B 6 -14.949 -29.268 4.538 1.00 55.38 P
ATOM 3 OP1 A B 6 -13.805 -30.209 4.422 1.00 60.61 O
ATOM 4 OP2 A B 6 -16.037 -29.531 5.509 1.00 62.99 O
ATOM 5 O5' A B 6 -14.361 -27.816 4.834 1.00 57.20 O
ATOM 6 C5' A B 6 -13.206 -27.353 4.134 1.00 56.91 C
ATOM 7 C4' A B 6 -13.423 -25.940 3.617 1.00 57.92 C
ATOM 8 O4' A B 6 -14.303 -25.969 2.464 1.00 55.06 O
ATOM 9 C3' A B 6 -14.097 -24.975 4.589 1.00 55.93 C
ATOM 10 O3' A B 6 -13.137 -24.387 5.466 1.00 55.72 O
ATOM 11 C2' A B 6 -14.602 -23.923 3.624 1.00 52.47 C
ATOM 12 O2' A B 6 -13.560 -23.049 3.239 1.00 59.00 O
ATOM 13 C1' A B 6 -15.032 -24.756 2.421 1.00 50.05 C
ATOM 14 N9 A B 6 -16.467 -25.031 2.416 1.00 56.32 N
ATOM 15 C8 A B 6 -17.095 -26.210 2.725 1.00 54.26 C
ATOM 16 N7 A B 6 -18.401 -26.147 2.634 1.00 54.42 N
ATOM 17 C5 A B 6 -18.650 -24.842 2.246 1.00 57.67 C
ATOM 18 C6 A B 6 -19.842 -24.141 1.977 1.00 51.86 C
ATOM 19 N6 A B 6 -21.052 -24.695 2.075 1.00 48.85 N
ATOM 20 N1 A B 6 -19.735 -22.846 1.608 1.00 46.04 N
ATOM 21 C2 A B 6 -18.520 -22.293 1.523 1.00 50.24 C
ATOM 22 N3 A B 6 -17.327 -22.849 1.753 1.00 49.71 N
ATOM 23 C4 A B 6 -17.465 -24.138 2.112 1.00 57.99 C
ATOM 24 P U B 7 -13.441 -24.285 7.027 1.00 70.37 P
ATOM 25 OP1 U B 7 -12.330 -23.534 7.667 1.00 76.61 O
ATOM 26 OP2 U B 7 -13.781 -25.647 7.509 1.00 65.65 O
ATOM 27 O5' U B 7 -14.764 -23.410 7.091 1.00 58.07 O
TER
Atoms:
C2: (-16.361,-34.107,0.691)
OP1: (-11.166,-27.994,0.838)
OP2: (-10.902,-30.528,0.669)
C4: (-14.287,-35.164,0.539)
O5': (-13.152,-29.550,0.755)
C3': (-15.492,-30.091,2.094)
C1': (-16.559,-31.624,0.661)
O4': (-15.974,-30.615,-0.144)
C5': (-14.277,-28.894,0.158)
P: (-11.650,-29.286,0.308)
O2: (-17.595,-34.140,0.799)
C4': (-15.572,-29.496,0.690)
C2': (-16.677,-31.058,2.074)
O2': (-17.931,-30.419,2.241)
N1: (-15.724,-32.865,0.608)
N3: (-15.612,-35.238,0.651)
N4: (-13.605,-36.314,0.501)
C6: (-14.364,-32.795,0.492)
C5: (-13.613,-33.906,0.457)
O3': (-15.624,-29.085,3.093)
OP1: (-11.166,-27.994,0.838)
OP2: (-10.902,-30.528,0.669)
C4: (-14.287,-35.164,0.539)
O5': (-13.152,-29.550,0.755)
C3': (-15.492,-30.091,2.094)
C1': (-16.559,-31.624,0.661)
O4': (-15.974,-30.615,-0.144)
C5': (-14.277,-28.894,0.158)
P: (-11.650,-29.286,0.308)
O2: (-17.595,-34.140,0.799)
C4': (-15.572,-29.496,0.690)
C2': (-16.677,-31.058,2.074)
O2': (-17.931,-30.419,2.241)
N1: (-15.724,-32.865,0.608)
N3: (-15.612,-35.238,0.651)
N4: (-13.605,-36.314,0.501)
C6: (-14.364,-32.795,0.492)
C5: (-13.613,-33.906,0.457)
O3': (-15.624,-29.085,3.093)
OP1: (-13.805,-30.209,4.422)
OP2: (-16.037,-29.531,5.509)
C3': (-14.097,-24.975,4.589)
C1': (-15.032,-24.756,2.421)
C5': (-13.206,-27.353,4.134)
O4': (-14.303,-25.969,2.464)
C8: (-17.095,-26.210,2.725)
O2': (-13.560,-23.049,3.239)
C6: (-19.842,-24.141,1.977)
C5: (-18.650,-24.842,2.246)
C4: (-17.465,-24.138,2.112)
P: (-14.949,-29.268,4.538)
C4': (-13.423,-25.940,3.617)
C2': (-14.602,-23.923,3.624)
C2: (-18.520,-22.293,1.523)
N1: (-19.735,-22.846,1.608)
N3: (-17.327,-22.849,1.753)
N6: (-21.052,-24.695,2.075)
N7: (-18.401,-26.147,2.634)
N9: (-16.467,-25.031,2.416)
O5': (-14.361,-27.816,4.834)
O3': (-13.137,-24.387,5.466)
OP2: (-16.037,-29.531,5.509)
C3': (-14.097,-24.975,4.589)
C1': (-15.032,-24.756,2.421)
C5': (-13.206,-27.353,4.134)
O4': (-14.303,-25.969,2.464)
C8: (-17.095,-26.210,2.725)
O2': (-13.560,-23.049,3.239)
C6: (-19.842,-24.141,1.977)
C5: (-18.650,-24.842,2.246)
C4: (-17.465,-24.138,2.112)
P: (-14.949,-29.268,4.538)
C4': (-13.423,-25.940,3.617)
C2': (-14.602,-23.923,3.624)
C2: (-18.520,-22.293,1.523)
N1: (-19.735,-22.846,1.608)
N3: (-17.327,-22.849,1.753)
N6: (-21.052,-24.695,2.075)
N7: (-18.401,-26.147,2.634)
N9: (-16.467,-25.031,2.416)
O5': (-14.361,-27.816,4.834)
O3': (-13.137,-24.387,5.466)
Image (generated by PyMOL):