Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:438:4102
Extra
PDB:
ATOM 1 O3' U A 37 61.165 -3.344 136.789 1.00 54.08 O
ATOM 2 P G A 38 60.449 -1.983 136.289 1.00 52.34 P
ATOM 3 OP1 G A 38 61.425 -1.252 135.494 1.00 52.12 O
ATOM 4 OP2 G A 38 59.841 -1.320 137.445 1.00 53.05 O
ATOM 5 O5' G A 38 59.305 -2.523 135.368 1.00 51.58 O
ATOM 6 C5' G A 38 59.573 -3.084 134.101 1.00 50.82 C
ATOM 7 C4' G A 38 58.546 -2.621 133.145 1.00 50.21 C
ATOM 8 O4' G A 38 57.248 -2.979 133.695 1.00 50.33 O
ATOM 9 C3' G A 38 58.529 -1.111 132.963 1.00 50.30 C
ATOM 10 O3' G A 38 58.168 -0.778 131.622 1.00 49.56 O
ATOM 11 C2' G A 38 57.451 -0.659 133.934 1.00 50.80 C
ATOM 12 O2' G A 38 56.812 0.530 133.571 1.00 50.70 O
ATOM 13 C1' G A 38 56.480 -1.824 133.917 1.00 50.53 C
ATOM 14 N9 G A 38 55.764 -1.982 135.173 1.00 51.16 N
ATOM 15 C8 G A 38 56.353 -1.829 136.406 1.00 51.96 C
ATOM 16 N7 G A 38 55.529 -1.979 137.398 1.00 52.46 N
ATOM 17 C5 G A 38 54.303 -2.208 136.772 1.00 51.96 C
ATOM 18 C6 G A 38 53.020 -2.436 137.330 1.00 52.17 C
ATOM 19 O6 G A 38 52.635 -2.496 138.496 1.00 52.85 O
ATOM 20 N1 G A 38 52.065 -2.630 136.367 1.00 51.52 N
ATOM 21 C2 G A 38 52.265 -2.615 135.040 1.00 50.75 C
ATOM 22 N2 G A 38 51.107 -2.853 134.409 1.00 50.30 N
ATOM 23 N3 G A 38 53.452 -2.408 134.457 1.00 50.51 N
ATOM 24 C4 G A 38 54.423 -2.220 135.386 1.00 51.15 C
ATOM 25 P A A 39 59.295 -0.268 130.594 1.00 46.64 P
ATOM 26 OP1 A A 39 60.537 -0.150 131.360 1.00 47.24 O
ATOM 27 OP2 A A 39 58.761 0.935 129.910 1.00 46.38 O
ATOM 28 O5' A A 39 59.413 -1.472 129.562 1.00 45.94 O
TER
ATOM 1 O3' U B 101 48.768 6.238 129.469 1.00 50.40 O
ATOM 2 P G B 102 48.187 4.819 129.886 1.00 46.34 P
ATOM 3 OP1 G B 102 46.714 4.867 129.690 1.00 46.23 O
ATOM 4 OP2 G B 102 48.701 4.524 131.204 1.00 47.04 O
ATOM 5 O5' G B 102 48.857 3.859 128.825 1.00 45.61 O
ATOM 6 C5' G B 102 48.582 3.983 127.441 1.00 44.88 C
ATOM 7 C4' G B 102 49.467 3.082 126.655 1.00 44.35 C
ATOM 8 O4' G B 102 50.839 3.518 126.805 1.00 44.55 O
ATOM 9 C3' G B 102 49.467 1.633 127.106 1.00 44.36 C
ATOM 10 O3' G B 102 48.434 0.882 126.481 1.00 43.91 O
ATOM 11 C2' G B 102 50.866 1.140 126.740 1.00 44.16 C
ATOM 12 O2' G B 102 50.882 0.651 125.391 1.00 43.41 O
ATOM 13 C1' G B 102 51.713 2.418 126.837 1.00 44.44 C
ATOM 14 N9 G B 102 52.499 2.499 128.093 1.00 45.15 N
ATOM 15 C8 G B 102 51.990 3.024 129.274 1.00 45.84 C
ATOM 16 N7 G B 102 52.845 3.048 130.269 1.00 46.44 N
ATOM 17 C5 G B 102 54.044 2.522 129.742 1.00 46.15 C
ATOM 18 C6 G B 102 55.326 2.280 130.340 1.00 46.54 C
ATOM 19 O6 G B 102 55.745 2.469 131.468 1.00 47.24 O
ATOM 20 N1 G B 102 56.228 1.738 129.474 1.00 46.07 N
ATOM 21 C2 G B 102 55.944 1.459 128.180 1.00 45.31 C
ATOM 22 N2 G B 102 56.943 0.931 127.483 1.00 44.97 N
ATOM 23 N3 G B 102 54.790 1.671 127.593 1.00 44.93 N
ATOM 24 C4 G B 102 53.853 2.201 128.401 1.00 45.36 C
ATOM 25 P A B 103 47.356 0.055 127.344 1.00 46.85 P
ATOM 26 OP1 A B 103 46.296 -0.310 126.410 1.00 46.32 O
ATOM 27 OP2 A B 103 47.016 0.875 128.546 1.00 47.59 O
ATOM 28 O5' A B 103 48.157 -1.263 127.768 1.00 46.92 O
TER
ATOM 2 P G A 38 60.449 -1.983 136.289 1.00 52.34 P
ATOM 3 OP1 G A 38 61.425 -1.252 135.494 1.00 52.12 O
ATOM 4 OP2 G A 38 59.841 -1.320 137.445 1.00 53.05 O
ATOM 5 O5' G A 38 59.305 -2.523 135.368 1.00 51.58 O
ATOM 6 C5' G A 38 59.573 -3.084 134.101 1.00 50.82 C
ATOM 7 C4' G A 38 58.546 -2.621 133.145 1.00 50.21 C
ATOM 8 O4' G A 38 57.248 -2.979 133.695 1.00 50.33 O
ATOM 9 C3' G A 38 58.529 -1.111 132.963 1.00 50.30 C
ATOM 10 O3' G A 38 58.168 -0.778 131.622 1.00 49.56 O
ATOM 11 C2' G A 38 57.451 -0.659 133.934 1.00 50.80 C
ATOM 12 O2' G A 38 56.812 0.530 133.571 1.00 50.70 O
ATOM 13 C1' G A 38 56.480 -1.824 133.917 1.00 50.53 C
ATOM 14 N9 G A 38 55.764 -1.982 135.173 1.00 51.16 N
ATOM 15 C8 G A 38 56.353 -1.829 136.406 1.00 51.96 C
ATOM 16 N7 G A 38 55.529 -1.979 137.398 1.00 52.46 N
ATOM 17 C5 G A 38 54.303 -2.208 136.772 1.00 51.96 C
ATOM 18 C6 G A 38 53.020 -2.436 137.330 1.00 52.17 C
ATOM 19 O6 G A 38 52.635 -2.496 138.496 1.00 52.85 O
ATOM 20 N1 G A 38 52.065 -2.630 136.367 1.00 51.52 N
ATOM 21 C2 G A 38 52.265 -2.615 135.040 1.00 50.75 C
ATOM 22 N2 G A 38 51.107 -2.853 134.409 1.00 50.30 N
ATOM 23 N3 G A 38 53.452 -2.408 134.457 1.00 50.51 N
ATOM 24 C4 G A 38 54.423 -2.220 135.386 1.00 51.15 C
ATOM 25 P A A 39 59.295 -0.268 130.594 1.00 46.64 P
ATOM 26 OP1 A A 39 60.537 -0.150 131.360 1.00 47.24 O
ATOM 27 OP2 A A 39 58.761 0.935 129.910 1.00 46.38 O
ATOM 28 O5' A A 39 59.413 -1.472 129.562 1.00 45.94 O
TER
ATOM 1 O3' U B 101 48.768 6.238 129.469 1.00 50.40 O
ATOM 2 P G B 102 48.187 4.819 129.886 1.00 46.34 P
ATOM 3 OP1 G B 102 46.714 4.867 129.690 1.00 46.23 O
ATOM 4 OP2 G B 102 48.701 4.524 131.204 1.00 47.04 O
ATOM 5 O5' G B 102 48.857 3.859 128.825 1.00 45.61 O
ATOM 6 C5' G B 102 48.582 3.983 127.441 1.00 44.88 C
ATOM 7 C4' G B 102 49.467 3.082 126.655 1.00 44.35 C
ATOM 8 O4' G B 102 50.839 3.518 126.805 1.00 44.55 O
ATOM 9 C3' G B 102 49.467 1.633 127.106 1.00 44.36 C
ATOM 10 O3' G B 102 48.434 0.882 126.481 1.00 43.91 O
ATOM 11 C2' G B 102 50.866 1.140 126.740 1.00 44.16 C
ATOM 12 O2' G B 102 50.882 0.651 125.391 1.00 43.41 O
ATOM 13 C1' G B 102 51.713 2.418 126.837 1.00 44.44 C
ATOM 14 N9 G B 102 52.499 2.499 128.093 1.00 45.15 N
ATOM 15 C8 G B 102 51.990 3.024 129.274 1.00 45.84 C
ATOM 16 N7 G B 102 52.845 3.048 130.269 1.00 46.44 N
ATOM 17 C5 G B 102 54.044 2.522 129.742 1.00 46.15 C
ATOM 18 C6 G B 102 55.326 2.280 130.340 1.00 46.54 C
ATOM 19 O6 G B 102 55.745 2.469 131.468 1.00 47.24 O
ATOM 20 N1 G B 102 56.228 1.738 129.474 1.00 46.07 N
ATOM 21 C2 G B 102 55.944 1.459 128.180 1.00 45.31 C
ATOM 22 N2 G B 102 56.943 0.931 127.483 1.00 44.97 N
ATOM 23 N3 G B 102 54.790 1.671 127.593 1.00 44.93 N
ATOM 24 C4 G B 102 53.853 2.201 128.401 1.00 45.36 C
ATOM 25 P A B 103 47.356 0.055 127.344 1.00 46.85 P
ATOM 26 OP1 A B 103 46.296 -0.310 126.410 1.00 46.32 O
ATOM 27 OP2 A B 103 47.016 0.875 128.546 1.00 47.59 O
ATOM 28 O5' A B 103 48.157 -1.263 127.768 1.00 46.92 O
TER
Atoms:
OP1: (61.425,-1.252,135.494)
OP2: (59.841,-1.320,137.445)
C3': (58.529,-1.111,132.963)
C1': (56.480,-1.824,133.917)
C5': (59.573,-3.084,134.101)
O6: (52.635,-2.496,138.496)
O4': (57.248,-2.979,133.695)
C8: (56.353,-1.829,136.406)
C2: (52.265,-2.615,135.040)
C6: (53.020,-2.436,137.330)
C5: (54.303,-2.208,136.772)
C4: (54.423,-2.220,135.386)
P: (60.449,-1.983,136.289)
C4': (58.546,-2.621,133.145)
C2': (57.451,-0.659,133.934)
O2': (56.812,0.530,133.571)
N1: (52.065,-2.630,136.367)
N2: (51.107,-2.853,134.409)
N3: (53.452,-2.408,134.457)
N7: (55.529,-1.979,137.398)
N9: (55.764,-1.982,135.173)
O5': (59.305,-2.523,135.368)
O3': (58.168,-0.778,131.622)
OP2: (59.841,-1.320,137.445)
C3': (58.529,-1.111,132.963)
C1': (56.480,-1.824,133.917)
C5': (59.573,-3.084,134.101)
O6: (52.635,-2.496,138.496)
O4': (57.248,-2.979,133.695)
C8: (56.353,-1.829,136.406)
C2: (52.265,-2.615,135.040)
C6: (53.020,-2.436,137.330)
C5: (54.303,-2.208,136.772)
C4: (54.423,-2.220,135.386)
P: (60.449,-1.983,136.289)
C4': (58.546,-2.621,133.145)
C2': (57.451,-0.659,133.934)
O2': (56.812,0.530,133.571)
N1: (52.065,-2.630,136.367)
N2: (51.107,-2.853,134.409)
N3: (53.452,-2.408,134.457)
N7: (55.529,-1.979,137.398)
N9: (55.764,-1.982,135.173)
O5': (59.305,-2.523,135.368)
O3': (58.168,-0.778,131.622)
OP1: (46.714,4.867,129.690)
OP2: (48.701,4.524,131.204)
C3': (49.467,1.633,127.106)
C1': (51.713,2.418,126.837)
C5': (48.582,3.983,127.441)
O6: (55.745,2.469,131.468)
O4': (50.839,3.518,126.805)
C8: (51.990,3.024,129.274)
C2: (55.944,1.459,128.180)
C6: (55.326,2.280,130.340)
C5: (54.044,2.522,129.742)
C4: (53.853,2.201,128.401)
P: (48.187,4.819,129.886)
C4': (49.467,3.082,126.655)
C2': (50.866,1.140,126.740)
O2': (50.882,0.651,125.391)
N1: (56.228,1.738,129.474)
N2: (56.943,0.931,127.483)
N3: (54.790,1.671,127.593)
N7: (52.845,3.048,130.269)
N9: (52.499,2.499,128.093)
O5': (48.857,3.859,128.825)
O3': (48.434,0.882,126.481)
OP2: (48.701,4.524,131.204)
C3': (49.467,1.633,127.106)
C1': (51.713,2.418,126.837)
C5': (48.582,3.983,127.441)
O6: (55.745,2.469,131.468)
O4': (50.839,3.518,126.805)
C8: (51.990,3.024,129.274)
C2: (55.944,1.459,128.180)
C6: (55.326,2.280,130.340)
C5: (54.044,2.522,129.742)
C4: (53.853,2.201,128.401)
P: (48.187,4.819,129.886)
C4': (49.467,3.082,126.655)
C2': (50.866,1.140,126.740)
O2': (50.882,0.651,125.391)
N1: (56.228,1.738,129.474)
N2: (56.943,0.931,127.483)
N3: (54.790,1.671,127.593)
N7: (52.845,3.048,130.269)
N9: (52.499,2.499,128.093)
O5': (48.857,3.859,128.825)
O3': (48.434,0.882,126.481)
Image (generated by PyMOL):