Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1498:1501
Extra
PDB:
ATOM 1 O3' U A 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 2 P A A 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 3 OP1 A A 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 4 OP2 A A 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 5 O5' A A 498 42.166 -7.905 -44.388 1.00132.52 O
ATOM 6 C5' A A 498 42.791 -7.615 -45.630 1.00133.32 C
ATOM 7 C4' A A 498 44.038 -6.808 -45.423 1.00133.06 C
ATOM 8 O4' A A 498 43.702 -5.576 -44.748 1.00132.58 O
ATOM 9 C3' A A 498 45.094 -7.461 -44.553 1.00132.39 C
ATOM 10 O3' A A 498 45.960 -8.283 -45.308 1.00132.88 O
ATOM 11 C2' A A 498 45.808 -6.282 -43.910 1.00131.86 C
ATOM 12 O2' A A 498 46.833 -5.802 -44.769 1.00132.38 O
ATOM 13 C1' A A 498 44.703 -5.228 -43.836 1.00131.87 C
ATOM 14 N9 A A 498 44.088 -5.125 -42.504 1.00131.00 N
ATOM 15 C8 A A 498 43.027 -5.841 -42.008 1.00130.76 C
ATOM 16 N7 A A 498 42.676 -5.483 -40.795 1.00129.96 N
ATOM 17 C5 A A 498 43.558 -4.449 -40.488 1.00129.67 C
ATOM 18 C6 A A 498 43.723 -3.633 -39.351 1.00128.90 C
ATOM 19 N6 A A 498 42.961 -3.740 -38.259 1.00128.24 N
ATOM 20 N1 A A 498 44.700 -2.691 -39.372 1.00128.84 N
ATOM 21 C2 A A 498 45.468 -2.578 -40.461 1.00129.51 C
ATOM 22 N3 A A 498 45.409 -3.286 -41.587 1.00130.27 N
ATOM 23 C4 A A 498 44.427 -4.211 -41.537 1.00130.31 C
ATOM 24 P U A 499 46.293 -9.777 -44.836 1.00107.80 P
ATOM 25 OP1 U A 499 47.443 -10.246 -45.663 1.00108.33 O
ATOM 26 OP2 U A 499 45.027 -10.545 -44.863 1.00107.94 O
ATOM 27 O5' U A 499 46.762 -9.587 -43.331 1.00106.73 O
TER
ATOM 1 O3' U B 500 57.387 -8.109 -42.404 1.00106.49 O
ATOM 2 P A B 501 58.024 -8.205 -43.889 1.00 95.49 P
ATOM 3 OP1 A B 501 57.506 -9.448 -44.520 1.00 95.98 O
ATOM 4 OP2 A B 501 59.501 -8.035 -43.746 1.00 95.37 O
ATOM 5 O5' A B 501 57.401 -6.941 -44.616 1.00 95.94 O
ATOM 6 C5' A B 501 57.786 -5.618 -44.266 1.00 95.66 C
ATOM 7 C4' A B 501 57.107 -4.629 -45.167 1.00 96.27 C
ATOM 8 O4' A B 501 55.700 -4.956 -45.223 1.00 96.34 O
ATOM 9 C3' A B 501 57.211 -3.156 -44.767 1.00 95.97 C
ATOM 10 O3' A B 501 57.456 -2.358 -45.928 1.00 96.76 O
ATOM 11 C2' A B 501 55.824 -2.835 -44.209 1.00 95.62 C
ATOM 12 O2' A B 501 55.398 -1.505 -44.431 1.00 95.78 O
ATOM 13 C1' A B 501 54.925 -3.825 -44.938 1.00 96.15 C
ATOM 14 N9 A B 501 53.811 -4.272 -44.137 1.00 95.64 N
ATOM 15 C8 A B 501 53.541 -3.966 -42.840 1.00 94.76 C
ATOM 16 N7 A B 501 52.456 -4.543 -42.407 1.00 94.52 N
ATOM 17 C5 A B 501 52.011 -5.278 -43.500 1.00 95.29 C
ATOM 18 C6 A B 501 50.904 -6.119 -43.698 1.00 95.49 C
ATOM 19 N6 A B 501 49.999 -6.372 -42.744 1.00 94.88 N
ATOM 20 N1 A B 501 50.761 -6.694 -44.912 1.00 96.34 N
ATOM 21 C2 A B 501 51.672 -6.430 -45.849 1.00 96.94 C
ATOM 22 N3 A B 501 52.754 -5.661 -45.787 1.00 96.84 N
ATOM 23 C4 A B 501 52.858 -5.126 -44.568 1.00 95.98 C
ATOM 24 P U B 502 58.914 -1.724 -46.187 1.00117.52 P
ATOM 25 OP1 U B 502 58.730 -0.616 -47.159 1.00118.20 O
ATOM 26 OP2 U B 502 59.826 -2.846 -46.535 1.00117.75 O
ATOM 27 O5' U B 502 59.306 -1.136 -44.766 1.00116.54 O
TER
ATOM 2 P A A 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 3 OP1 A A 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 4 OP2 A A 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 5 O5' A A 498 42.166 -7.905 -44.388 1.00132.52 O
ATOM 6 C5' A A 498 42.791 -7.615 -45.630 1.00133.32 C
ATOM 7 C4' A A 498 44.038 -6.808 -45.423 1.00133.06 C
ATOM 8 O4' A A 498 43.702 -5.576 -44.748 1.00132.58 O
ATOM 9 C3' A A 498 45.094 -7.461 -44.553 1.00132.39 C
ATOM 10 O3' A A 498 45.960 -8.283 -45.308 1.00132.88 O
ATOM 11 C2' A A 498 45.808 -6.282 -43.910 1.00131.86 C
ATOM 12 O2' A A 498 46.833 -5.802 -44.769 1.00132.38 O
ATOM 13 C1' A A 498 44.703 -5.228 -43.836 1.00131.87 C
ATOM 14 N9 A A 498 44.088 -5.125 -42.504 1.00131.00 N
ATOM 15 C8 A A 498 43.027 -5.841 -42.008 1.00130.76 C
ATOM 16 N7 A A 498 42.676 -5.483 -40.795 1.00129.96 N
ATOM 17 C5 A A 498 43.558 -4.449 -40.488 1.00129.67 C
ATOM 18 C6 A A 498 43.723 -3.633 -39.351 1.00128.90 C
ATOM 19 N6 A A 498 42.961 -3.740 -38.259 1.00128.24 N
ATOM 20 N1 A A 498 44.700 -2.691 -39.372 1.00128.84 N
ATOM 21 C2 A A 498 45.468 -2.578 -40.461 1.00129.51 C
ATOM 22 N3 A A 498 45.409 -3.286 -41.587 1.00130.27 N
ATOM 23 C4 A A 498 44.427 -4.211 -41.537 1.00130.31 C
ATOM 24 P U A 499 46.293 -9.777 -44.836 1.00107.80 P
ATOM 25 OP1 U A 499 47.443 -10.246 -45.663 1.00108.33 O
ATOM 26 OP2 U A 499 45.027 -10.545 -44.863 1.00107.94 O
ATOM 27 O5' U A 499 46.762 -9.587 -43.331 1.00106.73 O
TER
ATOM 1 O3' U B 500 57.387 -8.109 -42.404 1.00106.49 O
ATOM 2 P A B 501 58.024 -8.205 -43.889 1.00 95.49 P
ATOM 3 OP1 A B 501 57.506 -9.448 -44.520 1.00 95.98 O
ATOM 4 OP2 A B 501 59.501 -8.035 -43.746 1.00 95.37 O
ATOM 5 O5' A B 501 57.401 -6.941 -44.616 1.00 95.94 O
ATOM 6 C5' A B 501 57.786 -5.618 -44.266 1.00 95.66 C
ATOM 7 C4' A B 501 57.107 -4.629 -45.167 1.00 96.27 C
ATOM 8 O4' A B 501 55.700 -4.956 -45.223 1.00 96.34 O
ATOM 9 C3' A B 501 57.211 -3.156 -44.767 1.00 95.97 C
ATOM 10 O3' A B 501 57.456 -2.358 -45.928 1.00 96.76 O
ATOM 11 C2' A B 501 55.824 -2.835 -44.209 1.00 95.62 C
ATOM 12 O2' A B 501 55.398 -1.505 -44.431 1.00 95.78 O
ATOM 13 C1' A B 501 54.925 -3.825 -44.938 1.00 96.15 C
ATOM 14 N9 A B 501 53.811 -4.272 -44.137 1.00 95.64 N
ATOM 15 C8 A B 501 53.541 -3.966 -42.840 1.00 94.76 C
ATOM 16 N7 A B 501 52.456 -4.543 -42.407 1.00 94.52 N
ATOM 17 C5 A B 501 52.011 -5.278 -43.500 1.00 95.29 C
ATOM 18 C6 A B 501 50.904 -6.119 -43.698 1.00 95.49 C
ATOM 19 N6 A B 501 49.999 -6.372 -42.744 1.00 94.88 N
ATOM 20 N1 A B 501 50.761 -6.694 -44.912 1.00 96.34 N
ATOM 21 C2 A B 501 51.672 -6.430 -45.849 1.00 96.94 C
ATOM 22 N3 A B 501 52.754 -5.661 -45.787 1.00 96.84 N
ATOM 23 C4 A B 501 52.858 -5.126 -44.568 1.00 95.98 C
ATOM 24 P U B 502 58.914 -1.724 -46.187 1.00117.52 P
ATOM 25 OP1 U B 502 58.730 -0.616 -47.159 1.00118.20 O
ATOM 26 OP2 U B 502 59.826 -2.846 -46.535 1.00117.75 O
ATOM 27 O5' U B 502 59.306 -1.136 -44.766 1.00116.54 O
TER
Atoms:
OP1: (40.558,-9.681,-45.179)
OP2: (40.214,-8.523,-42.913)
C3': (45.094,-7.461,-44.553)
C1': (44.703,-5.228,-43.836)
C5': (42.791,-7.615,-45.630)
O4': (43.702,-5.576,-44.748)
C8: (43.027,-5.841,-42.008)
O2': (46.833,-5.802,-44.769)
C6: (43.723,-3.633,-39.351)
C5: (43.558,-4.449,-40.488)
C4: (44.427,-4.211,-41.537)
P: (40.675,-8.461,-44.330)
C4': (44.038,-6.808,-45.423)
C2': (45.808,-6.282,-43.910)
C2: (45.468,-2.578,-40.461)
N1: (44.700,-2.691,-39.372)
N3: (45.409,-3.286,-41.587)
N6: (42.961,-3.740,-38.259)
N7: (42.676,-5.483,-40.795)
N9: (44.088,-5.125,-42.504)
O5': (42.166,-7.905,-44.388)
O3': (45.960,-8.283,-45.308)
OP2: (40.214,-8.523,-42.913)
C3': (45.094,-7.461,-44.553)
C1': (44.703,-5.228,-43.836)
C5': (42.791,-7.615,-45.630)
O4': (43.702,-5.576,-44.748)
C8: (43.027,-5.841,-42.008)
O2': (46.833,-5.802,-44.769)
C6: (43.723,-3.633,-39.351)
C5: (43.558,-4.449,-40.488)
C4: (44.427,-4.211,-41.537)
P: (40.675,-8.461,-44.330)
C4': (44.038,-6.808,-45.423)
C2': (45.808,-6.282,-43.910)
C2: (45.468,-2.578,-40.461)
N1: (44.700,-2.691,-39.372)
N3: (45.409,-3.286,-41.587)
N6: (42.961,-3.740,-38.259)
N7: (42.676,-5.483,-40.795)
N9: (44.088,-5.125,-42.504)
O5': (42.166,-7.905,-44.388)
O3': (45.960,-8.283,-45.308)
OP1: (57.506,-9.448,-44.520)
OP2: (59.501,-8.035,-43.746)
C3': (57.211,-3.156,-44.767)
C1': (54.925,-3.825,-44.938)
C5': (57.786,-5.618,-44.266)
O4': (55.700,-4.956,-45.223)
C8: (53.541,-3.966,-42.840)
O2': (55.398,-1.505,-44.431)
C6: (50.904,-6.119,-43.698)
C5: (52.011,-5.278,-43.500)
C4: (52.858,-5.126,-44.568)
P: (58.024,-8.205,-43.889)
C4': (57.107,-4.629,-45.167)
C2': (55.824,-2.835,-44.209)
C2: (51.672,-6.430,-45.849)
N1: (50.761,-6.694,-44.912)
N3: (52.754,-5.661,-45.787)
N6: (49.999,-6.372,-42.744)
N7: (52.456,-4.543,-42.407)
N9: (53.811,-4.272,-44.137)
O5': (57.401,-6.941,-44.616)
O3': (57.456,-2.358,-45.928)
OP2: (59.501,-8.035,-43.746)
C3': (57.211,-3.156,-44.767)
C1': (54.925,-3.825,-44.938)
C5': (57.786,-5.618,-44.266)
O4': (55.700,-4.956,-45.223)
C8: (53.541,-3.966,-42.840)
O2': (55.398,-1.505,-44.431)
C6: (50.904,-6.119,-43.698)
C5: (52.011,-5.278,-43.500)
C4: (52.858,-5.126,-44.568)
P: (58.024,-8.205,-43.889)
C4': (57.107,-4.629,-45.167)
C2': (55.824,-2.835,-44.209)
C2: (51.672,-6.430,-45.849)
N1: (50.761,-6.694,-44.912)
N3: (52.754,-5.661,-45.787)
N6: (49.999,-6.372,-42.744)
N7: (52.456,-4.543,-42.407)
N9: (53.811,-4.272,-44.137)
O5': (57.401,-6.941,-44.616)
O3': (57.456,-2.358,-45.928)
Image (generated by PyMOL):