Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y58:Y61
Extra
PDB:
ATOM 1 O3' A A 57 4.127 29.091 50.249 1.00 30.43 O
ATOM 2 P U A 58 3.196 28.925 48.957 1.00 30.05 P
ATOM 3 OP1 U A 58 3.452 30.077 48.064 1.00 30.05 O
ATOM 4 OP2 U A 58 1.818 28.632 49.412 1.00 29.80 O
ATOM 5 O5' U A 58 3.762 27.598 48.266 1.00 29.58 O
ATOM 6 C5' U A 58 5.011 27.615 47.591 1.00 28.98 C
ATOM 7 C4' U A 58 5.389 26.210 47.165 1.00 28.65 C
ATOM 8 O4' U A 58 5.314 25.308 48.299 1.00 28.41 O
ATOM 9 C3' U A 58 4.451 25.589 46.146 1.00 28.48 C
ATOM 10 O3' U A 58 4.785 26.032 44.841 1.00 29.01 O
ATOM 11 C2' U A 58 4.756 24.109 46.334 1.00 28.28 C
ATOM 12 O2' U A 58 5.938 23.719 45.664 1.00 28.65 O
ATOM 13 C1' U A 58 4.937 24.018 47.849 1.00 27.64 C
ATOM 14 N1 U A 58 3.697 23.577 48.564 1.00 26.87 N
ATOM 15 C2 U A 58 3.458 22.225 48.714 1.00 26.52 C
ATOM 16 O2 U A 58 4.215 21.364 48.306 1.00 25.32 O
ATOM 17 N3 U A 58 2.296 21.909 49.374 1.00 26.03 N
ATOM 18 C4 U A 58 1.360 22.791 49.882 1.00 26.65 C
ATOM 19 O4 U A 58 0.363 22.353 50.447 1.00 26.62 O
ATOM 20 C5 U A 58 1.672 24.185 49.683 1.00 26.45 C
ATOM 21 C6 U A 58 2.803 24.516 49.045 1.00 26.80 C
ATOM 22 P A A 59 3.629 26.267 43.763 1.00 28.93 P
ATOM 23 OP1 A A 59 4.246 26.903 42.579 1.00 29.16 O
ATOM 24 OP2 A A 59 2.492 26.925 44.447 1.00 28.86 O
ATOM 25 O5' A A 59 3.180 24.779 43.378 1.00 28.95 O
TER
ATOM 1 O3' A B 60 1.717 17.447 48.253 1.00 30.22 O
ATOM 2 P U B 61 1.842 17.808 49.805 1.00 31.15 P
ATOM 3 OP1 U B 61 0.607 17.331 50.466 1.00 31.19 O
ATOM 4 OP2 U B 61 2.238 19.229 49.923 1.00 31.29 O
ATOM 5 O5' U B 61 3.079 16.912 50.285 1.00 30.53 O
ATOM 6 C5' U B 61 3.047 15.501 50.106 1.00 30.12 C
ATOM 7 C4' U B 61 4.440 14.895 50.165 1.00 30.38 C
ATOM 8 O4' U B 61 5.249 15.360 49.054 1.00 29.06 O
ATOM 9 C3' U B 61 5.265 15.243 51.395 1.00 30.73 C
ATOM 10 O3' U B 61 4.875 14.428 52.498 1.00 33.04 O
ATOM 11 C2' U B 61 6.663 14.894 50.893 1.00 29.78 C
ATOM 12 O2' U B 61 6.913 13.502 50.933 1.00 29.36 O
ATOM 13 C1' U B 61 6.610 15.376 49.442 1.00 28.58 C
ATOM 14 N1 U B 61 7.150 16.759 49.270 1.00 27.92 N
ATOM 15 C2 U B 61 8.474 16.932 48.909 1.00 27.52 C
ATOM 16 O2 U B 61 9.241 16.007 48.702 1.00 26.13 O
ATOM 17 N3 U B 61 8.873 18.243 48.793 1.00 26.96 N
ATOM 18 C4 U B 61 8.098 19.369 48.999 1.00 26.74 C
ATOM 19 O4 U B 61 8.594 20.481 48.856 1.00 27.37 O
ATOM 20 C5 U B 61 6.733 19.108 49.375 1.00 27.12 C
ATOM 21 C6 U B 61 6.321 17.842 49.496 1.00 27.30 C
ATOM 22 P G B 62 5.040 14.960 53.999 1.00 35.32 P
ATOM 23 OP1 G B 62 4.569 13.886 54.901 1.00 36.12 O
ATOM 24 OP2 G B 62 4.434 16.304 54.080 1.00 35.22 O
ATOM 25 O5' G B 62 6.624 15.124 54.168 1.00 37.88 O
TER
ATOM 2 P U A 58 3.196 28.925 48.957 1.00 30.05 P
ATOM 3 OP1 U A 58 3.452 30.077 48.064 1.00 30.05 O
ATOM 4 OP2 U A 58 1.818 28.632 49.412 1.00 29.80 O
ATOM 5 O5' U A 58 3.762 27.598 48.266 1.00 29.58 O
ATOM 6 C5' U A 58 5.011 27.615 47.591 1.00 28.98 C
ATOM 7 C4' U A 58 5.389 26.210 47.165 1.00 28.65 C
ATOM 8 O4' U A 58 5.314 25.308 48.299 1.00 28.41 O
ATOM 9 C3' U A 58 4.451 25.589 46.146 1.00 28.48 C
ATOM 10 O3' U A 58 4.785 26.032 44.841 1.00 29.01 O
ATOM 11 C2' U A 58 4.756 24.109 46.334 1.00 28.28 C
ATOM 12 O2' U A 58 5.938 23.719 45.664 1.00 28.65 O
ATOM 13 C1' U A 58 4.937 24.018 47.849 1.00 27.64 C
ATOM 14 N1 U A 58 3.697 23.577 48.564 1.00 26.87 N
ATOM 15 C2 U A 58 3.458 22.225 48.714 1.00 26.52 C
ATOM 16 O2 U A 58 4.215 21.364 48.306 1.00 25.32 O
ATOM 17 N3 U A 58 2.296 21.909 49.374 1.00 26.03 N
ATOM 18 C4 U A 58 1.360 22.791 49.882 1.00 26.65 C
ATOM 19 O4 U A 58 0.363 22.353 50.447 1.00 26.62 O
ATOM 20 C5 U A 58 1.672 24.185 49.683 1.00 26.45 C
ATOM 21 C6 U A 58 2.803 24.516 49.045 1.00 26.80 C
ATOM 22 P A A 59 3.629 26.267 43.763 1.00 28.93 P
ATOM 23 OP1 A A 59 4.246 26.903 42.579 1.00 29.16 O
ATOM 24 OP2 A A 59 2.492 26.925 44.447 1.00 28.86 O
ATOM 25 O5' A A 59 3.180 24.779 43.378 1.00 28.95 O
TER
ATOM 1 O3' A B 60 1.717 17.447 48.253 1.00 30.22 O
ATOM 2 P U B 61 1.842 17.808 49.805 1.00 31.15 P
ATOM 3 OP1 U B 61 0.607 17.331 50.466 1.00 31.19 O
ATOM 4 OP2 U B 61 2.238 19.229 49.923 1.00 31.29 O
ATOM 5 O5' U B 61 3.079 16.912 50.285 1.00 30.53 O
ATOM 6 C5' U B 61 3.047 15.501 50.106 1.00 30.12 C
ATOM 7 C4' U B 61 4.440 14.895 50.165 1.00 30.38 C
ATOM 8 O4' U B 61 5.249 15.360 49.054 1.00 29.06 O
ATOM 9 C3' U B 61 5.265 15.243 51.395 1.00 30.73 C
ATOM 10 O3' U B 61 4.875 14.428 52.498 1.00 33.04 O
ATOM 11 C2' U B 61 6.663 14.894 50.893 1.00 29.78 C
ATOM 12 O2' U B 61 6.913 13.502 50.933 1.00 29.36 O
ATOM 13 C1' U B 61 6.610 15.376 49.442 1.00 28.58 C
ATOM 14 N1 U B 61 7.150 16.759 49.270 1.00 27.92 N
ATOM 15 C2 U B 61 8.474 16.932 48.909 1.00 27.52 C
ATOM 16 O2 U B 61 9.241 16.007 48.702 1.00 26.13 O
ATOM 17 N3 U B 61 8.873 18.243 48.793 1.00 26.96 N
ATOM 18 C4 U B 61 8.098 19.369 48.999 1.00 26.74 C
ATOM 19 O4 U B 61 8.594 20.481 48.856 1.00 27.37 O
ATOM 20 C5 U B 61 6.733 19.108 49.375 1.00 27.12 C
ATOM 21 C6 U B 61 6.321 17.842 49.496 1.00 27.30 C
ATOM 22 P G B 62 5.040 14.960 53.999 1.00 35.32 P
ATOM 23 OP1 G B 62 4.569 13.886 54.901 1.00 36.12 O
ATOM 24 OP2 G B 62 4.434 16.304 54.080 1.00 35.22 O
ATOM 25 O5' G B 62 6.624 15.124 54.168 1.00 37.88 O
TER
Atoms:
C4: (1.360,22.791,49.882)
N3: (2.296,21.909,49.374)
OP1: (3.452,30.077,48.064)
OP2: (1.818,28.632,49.412)
C2: (3.458,22.225,48.714)
C1': (4.937,24.018,47.849)
C3': (4.451,25.589,46.146)
O5': (3.762,27.598,48.266)
O4': (5.314,25.308,48.299)
C5': (5.011,27.615,47.591)
P: (3.196,28.925,48.957)
C4': (5.389,26.210,47.165)
C2': (4.756,24.109,46.334)
O2': (5.938,23.719,45.664)
N1: (3.697,23.577,48.564)
O4: (0.363,22.353,50.447)
O2: (4.215,21.364,48.306)
C6: (2.803,24.516,49.045)
C5: (1.672,24.185,49.683)
O3': (4.785,26.032,44.841)
N3: (2.296,21.909,49.374)
OP1: (3.452,30.077,48.064)
OP2: (1.818,28.632,49.412)
C2: (3.458,22.225,48.714)
C1': (4.937,24.018,47.849)
C3': (4.451,25.589,46.146)
O5': (3.762,27.598,48.266)
O4': (5.314,25.308,48.299)
C5': (5.011,27.615,47.591)
P: (3.196,28.925,48.957)
C4': (5.389,26.210,47.165)
C2': (4.756,24.109,46.334)
O2': (5.938,23.719,45.664)
N1: (3.697,23.577,48.564)
O4: (0.363,22.353,50.447)
O2: (4.215,21.364,48.306)
C6: (2.803,24.516,49.045)
C5: (1.672,24.185,49.683)
O3': (4.785,26.032,44.841)
C4: (8.098,19.369,48.999)
N3: (8.873,18.243,48.793)
OP1: (0.607,17.331,50.466)
OP2: (2.238,19.229,49.923)
C2: (8.474,16.932,48.909)
C1': (6.610,15.376,49.442)
C3': (5.265,15.243,51.395)
O5': (3.079,16.912,50.285)
O4': (5.249,15.360,49.054)
C5': (3.047,15.501,50.106)
P: (1.842,17.808,49.805)
C4': (4.440,14.895,50.165)
C2': (6.663,14.894,50.893)
O2': (6.913,13.502,50.933)
N1: (7.150,16.759,49.270)
O4: (8.594,20.481,48.856)
O2: (9.241,16.007,48.702)
C6: (6.321,17.842,49.496)
C5: (6.733,19.108,49.375)
O3': (4.875,14.428,52.498)
N3: (8.873,18.243,48.793)
OP1: (0.607,17.331,50.466)
OP2: (2.238,19.229,49.923)
C2: (8.474,16.932,48.909)
C1': (6.610,15.376,49.442)
C3': (5.265,15.243,51.395)
O5': (3.079,16.912,50.285)
O4': (5.249,15.360,49.054)
C5': (3.047,15.501,50.106)
P: (1.842,17.808,49.805)
C4': (4.440,14.895,50.165)
C2': (6.663,14.894,50.893)
O2': (6.913,13.502,50.933)
N1: (7.150,16.759,49.270)
O4: (8.594,20.481,48.856)
O2: (9.241,16.007,48.702)
C6: (6.321,17.842,49.496)
C5: (6.733,19.108,49.375)
O3': (4.875,14.428,52.498)
Image (generated by PyMOL):