ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A314:A317

Extra

PDB:
ATOM 1 O3' U A 313 5.030 132.519 22.760 1.00 61.03 O
ATOM 2 P G A 314 5.817 131.188 22.286 1.00 59.98 P
ATOM 3 OP1 G A 314 5.730 131.122 20.807 1.00 61.72 O
ATOM 4 OP2 G A 314 5.361 130.036 23.089 1.00 59.89 O
ATOM 5 O5' G A 314 7.345 131.496 22.612 1.00 60.64 O
ATOM 6 C5' G A 314 8.081 132.488 21.844 1.00 59.63 C
ATOM 7 C4' G A 314 9.556 132.410 22.162 1.00 58.69 C
ATOM 8 O4' G A 314 9.705 132.665 23.583 1.00 59.15 O
ATOM 9 C3' G A 314 10.252 131.066 21.929 1.00 57.62 C
ATOM 10 O3' G A 314 10.759 130.913 20.588 1.00 57.36 O
ATOM 11 C2' G A 314 11.392 131.133 22.934 1.00 58.04 C
ATOM 12 O2' G A 314 12.441 131.971 22.491 1.00 57.33 O
ATOM 13 C1' G A 314 10.718 131.835 24.110 1.00 58.99 C
ATOM 14 N9 G A 314 10.131 130.926 25.095 1.00 59.71 N
ATOM 15 C8 G A 314 8.800 130.641 25.313 1.00 59.40 C
ATOM 16 N7 G A 314 8.613 129.793 26.287 1.00 58.98 N
ATOM 17 C5 G A 314 9.896 129.489 26.724 1.00 59.51 C
ATOM 18 C6 G A 314 10.338 128.626 27.753 1.00 59.56 C
ATOM 19 O6 G A 314 9.667 127.900 28.488 1.00 59.97 O
ATOM 20 N1 G A 314 11.722 128.654 27.885 1.00 59.30 N
ATOM 21 C2 G A 314 12.574 129.406 27.122 1.00 58.62 C
ATOM 22 N2 G A 314 13.870 129.325 27.426 1.00 58.47 N
ATOM 23 N3 G A 314 12.181 130.188 26.143 1.00 59.28 N
ATOM 24 C4 G A 314 10.838 130.187 26.003 1.00 59.61 C
ATOM 25 P A A 315 10.967 129.435 19.939 1.00 57.44 P
ATOM 26 OP1 A A 315 11.643 129.608 18.639 1.00 56.59 O
ATOM 27 OP2 A A 315 9.698 128.654 20.018 1.00 58.45 O
ATOM 28 O5' A A 315 12.066 128.735 20.840 1.00 57.98 O
TER

ATOM 1 O3' U B 316 19.173 124.741 21.770 1.00 55.24 O
ATOM 2 P A B 317 18.821 124.563 23.316 1.00 55.02 P
ATOM 3 OP1 A B 317 19.759 123.548 23.853 1.00 51.84 O
ATOM 4 OP2 A B 317 17.358 124.317 23.368 1.00 54.24 O
ATOM 5 O5' A B 317 19.117 125.993 23.968 1.00 53.97 O
ATOM 6 C5' A B 317 20.279 126.232 24.781 1.00 53.71 C
ATOM 7 C4' A B 317 20.237 127.633 25.347 1.00 53.88 C
ATOM 8 O4' A B 317 20.080 128.575 24.242 1.00 53.96 O
ATOM 9 C3' A B 317 19.088 127.915 26.316 1.00 54.17 C
ATOM 10 O3' A B 317 19.496 128.886 27.313 1.00 55.06 O
ATOM 11 C2' A B 317 18.051 128.528 25.374 1.00 54.17 C
ATOM 12 O2' A B 317 17.059 129.320 25.988 1.00 54.58 O
ATOM 13 C1' A B 317 18.947 129.377 24.476 1.00 55.02 C
ATOM 14 N9 A B 317 18.399 129.828 23.191 1.00 57.19 N
ATOM 15 C8 A B 317 17.679 129.115 22.256 1.00 58.13 C
ATOM 16 N7 A B 317 17.350 129.814 21.196 1.00 58.34 N
ATOM 17 C5 A B 317 17.886 131.069 21.444 1.00 57.56 C
ATOM 18 C6 A B 317 17.899 132.257 20.692 1.00 57.28 C
ATOM 19 N6 A B 317 17.360 132.385 19.478 1.00 55.55 N
ATOM 20 N1 A B 317 18.509 133.332 21.234 1.00 57.71 N
ATOM 21 C2 A B 317 19.082 133.214 22.440 1.00 58.25 C
ATOM 22 N3 A B 317 19.151 132.152 23.235 1.00 57.88 N
ATOM 23 C4 A B 317 18.527 131.097 22.673 1.00 57.86 C
ATOM 24 P C B 318 20.319 128.428 28.636 1.00 53.87 P
ATOM 25 OP1 C B 318 20.370 129.631 29.493 1.00 54.03 O
ATOM 26 OP2 C B 318 21.589 127.721 28.262 1.00 51.34 O
ATOM 27 O5' C B 318 19.373 127.400 29.407 1.00 54.11 O
TER

Atoms:
OP1: (5.730,131.122,20.807)
OP2: (5.361,130.036,23.089)
C3': (10.252,131.066,21.929)
C1': (10.718,131.835,24.110)
C5': (8.081,132.488,21.844)
O6: (9.667,127.900,28.488)
O4': (9.705,132.665,23.583)
C8: (8.800,130.641,25.313)
C2: (12.574,129.406,27.122)
C6: (10.338,128.626,27.753)
C5: (9.896,129.489,26.724)
C4: (10.838,130.187,26.003)
P: (5.817,131.188,22.286)
C4': (9.556,132.410,22.162)
C2': (11.392,131.133,22.934)
O2': (12.441,131.971,22.491)
N1: (11.722,128.654,27.885)
N2: (13.870,129.325,27.426)
N3: (12.181,130.188,26.143)
N7: (8.613,129.793,26.287)
N9: (10.131,130.926,25.095)
O5': (7.345,131.496,22.612)
O3': (10.759,130.913,20.588)
OP1: (19.759,123.548,23.853)
OP2: (17.358,124.317,23.368)
C3': (19.088,127.915,26.316)
C1': (18.947,129.377,24.476)
C5': (20.279,126.232,24.781)
O4': (20.080,128.575,24.242)
C8: (17.679,129.115,22.256)
O2': (17.059,129.320,25.988)
C6: (17.899,132.257,20.692)
C5: (17.886,131.069,21.444)
C4: (18.527,131.097,22.673)
P: (18.821,124.563,23.316)
C4': (20.237,127.633,25.347)
C2': (18.051,128.528,25.374)
C2: (19.082,133.214,22.440)
N1: (18.509,133.332,21.234)
N3: (19.151,132.152,23.235)
N6: (17.360,132.385,19.478)
N7: (17.350,129.814,21.196)
N9: (18.399,129.828,23.191)
O5': (19.117,125.993,23.968)
O3': (19.496,128.886,27.313)
Image (generated by PyMOL):
PyMOL image
show in jmol