Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0314:0317
Extra
PDB:
ATOM 1 O3' U A 313 4.856 132.794 22.403 1.00 55.72 O
ATOM 2 P G A 314 5.566 131.455 21.869 1.00 55.64 P
ATOM 3 OP1 G A 314 5.404 131.439 20.394 1.00 57.61 O
ATOM 4 OP2 G A 314 5.087 130.304 22.670 1.00 54.83 O
ATOM 5 O5' G A 314 7.112 131.669 22.184 1.00 55.67 O
ATOM 6 C5' G A 314 7.882 132.665 21.482 1.00 53.27 C
ATOM 7 C4' G A 314 9.342 132.559 21.857 1.00 52.29 C
ATOM 8 O4' G A 314 9.494 132.786 23.282 1.00 53.66 O
ATOM 9 C3' G A 314 9.991 131.205 21.625 1.00 51.03 C
ATOM 10 O3' G A 314 10.427 131.094 20.281 1.00 49.64 O
ATOM 11 C2' G A 314 11.162 131.242 22.598 1.00 51.71 C
ATOM 12 O2' G A 314 12.242 132.026 22.134 1.00 51.21 O
ATOM 13 C1' G A 314 10.538 131.971 23.786 1.00 53.57 C
ATOM 14 N9 G A 314 9.985 131.075 24.799 1.00 55.92 N
ATOM 15 C8 G A 314 8.659 130.790 25.024 1.00 55.24 C
ATOM 16 N7 G A 314 8.473 129.976 26.024 1.00 56.06 N
ATOM 17 C5 G A 314 9.753 129.696 26.485 1.00 57.24 C
ATOM 18 C6 G A 314 10.186 128.873 27.559 1.00 57.87 C
ATOM 19 O6 G A 314 9.502 128.213 28.347 1.00 59.32 O
ATOM 20 N1 G A 314 11.572 128.865 27.672 1.00 57.31 N
ATOM 21 C2 G A 314 12.433 129.561 26.867 1.00 56.41 C
ATOM 22 N2 G A 314 13.737 129.417 27.137 1.00 55.58 N
ATOM 23 N3 G A 314 12.046 130.338 25.869 1.00 56.98 N
ATOM 24 C4 G A 314 10.699 130.358 25.736 1.00 56.86 C
ATOM 25 P A A 315 10.732 129.650 19.651 1.00 51.08 P
ATOM 26 OP1 A A 315 11.406 129.877 18.346 1.00 48.92 O
ATOM 27 OP2 A A 315 9.489 128.846 19.719 1.00 50.70 O
ATOM 28 O5' A A 315 11.807 128.990 20.620 1.00 52.77 O
TER
ATOM 1 O3' U B 316 18.987 124.752 21.566 1.00 50.64 O
ATOM 2 P A B 317 18.509 124.648 23.104 1.00 49.71 P
ATOM 3 OP1 A B 317 19.381 123.625 23.736 1.00 48.29 O
ATOM 4 OP2 A B 317 17.034 124.471 23.133 1.00 49.01 O
ATOM 5 O5' A B 317 18.803 126.085 23.743 1.00 48.44 O
ATOM 6 C5' A B 317 19.983 126.328 24.546 1.00 45.65 C
ATOM 7 C4' A B 317 19.955 127.723 25.135 1.00 44.99 C
ATOM 8 O4' A B 317 19.834 128.700 24.062 1.00 46.33 O
ATOM 9 C3' A B 317 18.819 128.035 26.108 1.00 45.49 C
ATOM 10 O3' A B 317 19.234 129.060 27.025 1.00 46.74 O
ATOM 11 C2' A B 317 17.791 128.682 25.190 1.00 45.29 C
ATOM 12 O2' A B 317 16.890 129.518 25.883 1.00 43.62 O
ATOM 13 C1' A B 317 18.706 129.516 24.298 1.00 46.82 C
ATOM 14 N9 A B 317 18.153 129.947 23.014 1.00 50.32 N
ATOM 15 C8 A B 317 17.343 129.259 22.144 1.00 50.99 C
ATOM 16 N7 A B 317 17.022 129.938 21.070 1.00 52.42 N
ATOM 17 C5 A B 317 17.663 131.156 21.240 1.00 52.54 C
ATOM 18 C6 A B 317 17.720 132.316 20.447 1.00 51.63 C
ATOM 19 N6 A B 317 17.092 132.448 19.279 1.00 50.08 N
ATOM 20 N1 A B 317 18.454 133.354 20.906 1.00 52.92 N
ATOM 21 C2 A B 317 19.079 133.228 22.083 1.00 53.27 C
ATOM 22 N3 A B 317 19.098 132.195 22.921 1.00 53.40 N
ATOM 23 C4 A B 317 18.364 131.176 22.434 1.00 53.21 C
ATOM 24 P C B 318 20.052 128.690 28.362 1.00 46.69 P
ATOM 25 OP1 C B 318 20.073 129.936 29.172 1.00 43.90 O
ATOM 26 OP2 C B 318 21.338 128.031 27.981 1.00 41.31 O
ATOM 27 O5' C B 318 19.143 127.620 29.121 1.00 45.84 O
TER
ATOM 2 P G A 314 5.566 131.455 21.869 1.00 55.64 P
ATOM 3 OP1 G A 314 5.404 131.439 20.394 1.00 57.61 O
ATOM 4 OP2 G A 314 5.087 130.304 22.670 1.00 54.83 O
ATOM 5 O5' G A 314 7.112 131.669 22.184 1.00 55.67 O
ATOM 6 C5' G A 314 7.882 132.665 21.482 1.00 53.27 C
ATOM 7 C4' G A 314 9.342 132.559 21.857 1.00 52.29 C
ATOM 8 O4' G A 314 9.494 132.786 23.282 1.00 53.66 O
ATOM 9 C3' G A 314 9.991 131.205 21.625 1.00 51.03 C
ATOM 10 O3' G A 314 10.427 131.094 20.281 1.00 49.64 O
ATOM 11 C2' G A 314 11.162 131.242 22.598 1.00 51.71 C
ATOM 12 O2' G A 314 12.242 132.026 22.134 1.00 51.21 O
ATOM 13 C1' G A 314 10.538 131.971 23.786 1.00 53.57 C
ATOM 14 N9 G A 314 9.985 131.075 24.799 1.00 55.92 N
ATOM 15 C8 G A 314 8.659 130.790 25.024 1.00 55.24 C
ATOM 16 N7 G A 314 8.473 129.976 26.024 1.00 56.06 N
ATOM 17 C5 G A 314 9.753 129.696 26.485 1.00 57.24 C
ATOM 18 C6 G A 314 10.186 128.873 27.559 1.00 57.87 C
ATOM 19 O6 G A 314 9.502 128.213 28.347 1.00 59.32 O
ATOM 20 N1 G A 314 11.572 128.865 27.672 1.00 57.31 N
ATOM 21 C2 G A 314 12.433 129.561 26.867 1.00 56.41 C
ATOM 22 N2 G A 314 13.737 129.417 27.137 1.00 55.58 N
ATOM 23 N3 G A 314 12.046 130.338 25.869 1.00 56.98 N
ATOM 24 C4 G A 314 10.699 130.358 25.736 1.00 56.86 C
ATOM 25 P A A 315 10.732 129.650 19.651 1.00 51.08 P
ATOM 26 OP1 A A 315 11.406 129.877 18.346 1.00 48.92 O
ATOM 27 OP2 A A 315 9.489 128.846 19.719 1.00 50.70 O
ATOM 28 O5' A A 315 11.807 128.990 20.620 1.00 52.77 O
TER
ATOM 1 O3' U B 316 18.987 124.752 21.566 1.00 50.64 O
ATOM 2 P A B 317 18.509 124.648 23.104 1.00 49.71 P
ATOM 3 OP1 A B 317 19.381 123.625 23.736 1.00 48.29 O
ATOM 4 OP2 A B 317 17.034 124.471 23.133 1.00 49.01 O
ATOM 5 O5' A B 317 18.803 126.085 23.743 1.00 48.44 O
ATOM 6 C5' A B 317 19.983 126.328 24.546 1.00 45.65 C
ATOM 7 C4' A B 317 19.955 127.723 25.135 1.00 44.99 C
ATOM 8 O4' A B 317 19.834 128.700 24.062 1.00 46.33 O
ATOM 9 C3' A B 317 18.819 128.035 26.108 1.00 45.49 C
ATOM 10 O3' A B 317 19.234 129.060 27.025 1.00 46.74 O
ATOM 11 C2' A B 317 17.791 128.682 25.190 1.00 45.29 C
ATOM 12 O2' A B 317 16.890 129.518 25.883 1.00 43.62 O
ATOM 13 C1' A B 317 18.706 129.516 24.298 1.00 46.82 C
ATOM 14 N9 A B 317 18.153 129.947 23.014 1.00 50.32 N
ATOM 15 C8 A B 317 17.343 129.259 22.144 1.00 50.99 C
ATOM 16 N7 A B 317 17.022 129.938 21.070 1.00 52.42 N
ATOM 17 C5 A B 317 17.663 131.156 21.240 1.00 52.54 C
ATOM 18 C6 A B 317 17.720 132.316 20.447 1.00 51.63 C
ATOM 19 N6 A B 317 17.092 132.448 19.279 1.00 50.08 N
ATOM 20 N1 A B 317 18.454 133.354 20.906 1.00 52.92 N
ATOM 21 C2 A B 317 19.079 133.228 22.083 1.00 53.27 C
ATOM 22 N3 A B 317 19.098 132.195 22.921 1.00 53.40 N
ATOM 23 C4 A B 317 18.364 131.176 22.434 1.00 53.21 C
ATOM 24 P C B 318 20.052 128.690 28.362 1.00 46.69 P
ATOM 25 OP1 C B 318 20.073 129.936 29.172 1.00 43.90 O
ATOM 26 OP2 C B 318 21.338 128.031 27.981 1.00 41.31 O
ATOM 27 O5' C B 318 19.143 127.620 29.121 1.00 45.84 O
TER
Atoms:
OP1: (5.404,131.439,20.394)
OP2: (5.087,130.304,22.670)
C3': (9.991,131.205,21.625)
C1': (10.538,131.971,23.786)
C5': (7.882,132.665,21.482)
O6: (9.502,128.213,28.347)
O4': (9.494,132.786,23.282)
C8: (8.659,130.790,25.024)
C2: (12.433,129.561,26.867)
C6: (10.186,128.873,27.559)
C5: (9.753,129.696,26.485)
C4: (10.699,130.358,25.736)
P: (5.566,131.455,21.869)
C4': (9.342,132.559,21.857)
C2': (11.162,131.242,22.598)
O2': (12.242,132.026,22.134)
N1: (11.572,128.865,27.672)
N2: (13.737,129.417,27.137)
N3: (12.046,130.338,25.869)
N7: (8.473,129.976,26.024)
N9: (9.985,131.075,24.799)
O5': (7.112,131.669,22.184)
O3': (10.427,131.094,20.281)
OP2: (5.087,130.304,22.670)
C3': (9.991,131.205,21.625)
C1': (10.538,131.971,23.786)
C5': (7.882,132.665,21.482)
O6: (9.502,128.213,28.347)
O4': (9.494,132.786,23.282)
C8: (8.659,130.790,25.024)
C2: (12.433,129.561,26.867)
C6: (10.186,128.873,27.559)
C5: (9.753,129.696,26.485)
C4: (10.699,130.358,25.736)
P: (5.566,131.455,21.869)
C4': (9.342,132.559,21.857)
C2': (11.162,131.242,22.598)
O2': (12.242,132.026,22.134)
N1: (11.572,128.865,27.672)
N2: (13.737,129.417,27.137)
N3: (12.046,130.338,25.869)
N7: (8.473,129.976,26.024)
N9: (9.985,131.075,24.799)
O5': (7.112,131.669,22.184)
O3': (10.427,131.094,20.281)
OP1: (19.381,123.625,23.736)
OP2: (17.034,124.471,23.133)
C3': (18.819,128.035,26.108)
C1': (18.706,129.516,24.298)
C5': (19.983,126.328,24.546)
O4': (19.834,128.700,24.062)
C8: (17.343,129.259,22.144)
O2': (16.890,129.518,25.883)
C6: (17.720,132.316,20.447)
C5: (17.663,131.156,21.240)
C4: (18.364,131.176,22.434)
P: (18.509,124.648,23.104)
C4': (19.955,127.723,25.135)
C2': (17.791,128.682,25.190)
C2: (19.079,133.228,22.083)
N1: (18.454,133.354,20.906)
N3: (19.098,132.195,22.921)
N6: (17.092,132.448,19.279)
N7: (17.022,129.938,21.070)
N9: (18.153,129.947,23.014)
O5': (18.803,126.085,23.743)
O3': (19.234,129.060,27.025)
OP2: (17.034,124.471,23.133)
C3': (18.819,128.035,26.108)
C1': (18.706,129.516,24.298)
C5': (19.983,126.328,24.546)
O4': (19.834,128.700,24.062)
C8: (17.343,129.259,22.144)
O2': (16.890,129.518,25.883)
C6: (17.720,132.316,20.447)
C5: (17.663,131.156,21.240)
C4: (18.364,131.176,22.434)
P: (18.509,124.648,23.104)
C4': (19.955,127.723,25.135)
C2': (17.791,128.682,25.190)
C2: (19.079,133.228,22.083)
N1: (18.454,133.354,20.906)
N3: (19.098,132.195,22.921)
N6: (17.092,132.448,19.279)
N7: (17.022,129.938,21.070)
N9: (18.153,129.947,23.014)
O5': (18.803,126.085,23.743)
O3': (19.234,129.060,27.025)
Image (generated by PyMOL):