Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0314:0317
Extra
PDB:
ATOM 1 O3' U A 313 5.025 132.593 22.392 1.00 55.83 O
ATOM 2 P G A 314 5.754 131.260 21.864 1.00 56.34 P
ATOM 3 OP1 G A 314 5.592 131.228 20.389 1.00 56.89 O
ATOM 4 OP2 G A 314 5.287 130.112 22.675 1.00 56.74 O
ATOM 5 O5' G A 314 7.297 131.488 22.181 1.00 55.14 O
ATOM 6 C5' G A 314 8.064 132.478 21.474 1.00 53.50 C
ATOM 7 C4' G A 314 9.512 132.423 21.904 1.00 52.86 C
ATOM 8 O4' G A 314 9.599 132.667 23.331 1.00 53.10 O
ATOM 9 C3' G A 314 10.215 131.089 21.708 1.00 51.92 C
ATOM 10 O3' G A 314 10.716 130.976 20.386 1.00 51.28 O
ATOM 11 C2' G A 314 11.344 131.173 22.724 1.00 53.15 C
ATOM 12 O2' G A 314 12.415 131.985 22.292 1.00 54.22 O
ATOM 13 C1' G A 314 10.652 131.894 23.880 1.00 54.49 C
ATOM 14 N9 G A 314 10.103 130.981 24.880 1.00 56.55 N
ATOM 15 C8 G A 314 8.779 130.689 25.116 1.00 55.91 C
ATOM 16 N7 G A 314 8.609 129.847 26.098 1.00 56.34 N
ATOM 17 C5 G A 314 9.898 129.561 26.533 1.00 57.28 C
ATOM 18 C6 G A 314 10.350 128.718 27.578 1.00 57.51 C
ATOM 19 O6 G A 314 9.684 128.031 28.355 1.00 59.59 O
ATOM 20 N1 G A 314 11.735 128.723 27.676 1.00 57.30 N
ATOM 21 C2 G A 314 12.581 129.445 26.878 1.00 56.43 C
ATOM 22 N2 G A 314 13.892 129.314 27.132 1.00 56.02 N
ATOM 23 N3 G A 314 12.175 130.236 25.905 1.00 56.18 N
ATOM 24 C4 G A 314 10.830 130.247 25.789 1.00 56.64 C
ATOM 25 P A A 315 10.935 129.526 19.728 1.00 52.90 P
ATOM 26 OP1 A A 315 11.564 129.732 18.397 1.00 50.86 O
ATOM 27 OP2 A A 315 9.658 128.772 19.841 1.00 52.91 O
ATOM 28 O5' A A 315 12.023 128.817 20.646 1.00 53.98 O
TER
ATOM 1 O3' U B 316 19.100 124.610 21.586 1.00 51.46 O
ATOM 2 P A B 317 18.629 124.495 23.123 1.00 52.00 P
ATOM 3 OP1 A B 317 19.490 123.466 23.766 1.00 49.82 O
ATOM 4 OP2 A B 317 17.154 124.328 23.137 1.00 52.12 O
ATOM 5 O5' A B 317 18.930 125.924 23.771 1.00 50.30 O
ATOM 6 C5' A B 317 20.085 126.138 24.612 1.00 47.94 C
ATOM 7 C4' A B 317 20.082 127.540 25.180 1.00 47.16 C
ATOM 8 O4' A B 317 19.992 128.494 24.086 1.00 48.49 O
ATOM 9 C3' A B 317 18.937 127.888 26.129 1.00 47.71 C
ATOM 10 O3' A B 317 19.353 128.915 27.047 1.00 48.60 O
ATOM 11 C2' A B 317 17.937 128.533 25.181 1.00 47.64 C
ATOM 12 O2' A B 317 17.039 129.397 25.835 1.00 47.79 O
ATOM 13 C1' A B 317 18.879 129.334 24.291 1.00 49.39 C
ATOM 14 N9 A B 317 18.353 129.757 22.993 1.00 52.64 N
ATOM 15 C8 A B 317 17.601 129.052 22.085 1.00 53.36 C
ATOM 16 N7 A B 317 17.285 129.739 21.014 1.00 54.47 N
ATOM 17 C5 A B 317 17.869 130.980 21.229 1.00 55.08 C
ATOM 18 C6 A B 317 17.901 132.157 20.463 1.00 55.11 C
ATOM 19 N6 A B 317 17.305 132.286 19.278 1.00 54.53 N
ATOM 20 N1 A B 317 18.575 133.215 20.965 1.00 56.38 N
ATOM 21 C2 A B 317 19.174 133.089 22.154 1.00 56.33 C
ATOM 22 N3 A B 317 19.214 132.038 22.968 1.00 55.90 N
ATOM 23 C4 A B 317 18.533 131.003 22.442 1.00 55.03 C
ATOM 24 P C B 318 20.141 128.543 28.405 1.00 48.48 P
ATOM 25 OP1 C B 318 20.097 129.772 29.239 1.00 46.25 O
ATOM 26 OP2 C B 318 21.455 127.935 28.051 1.00 44.43 O
ATOM 27 O5' C B 318 19.258 127.429 29.132 1.00 48.85 O
TER
ATOM 2 P G A 314 5.754 131.260 21.864 1.00 56.34 P
ATOM 3 OP1 G A 314 5.592 131.228 20.389 1.00 56.89 O
ATOM 4 OP2 G A 314 5.287 130.112 22.675 1.00 56.74 O
ATOM 5 O5' G A 314 7.297 131.488 22.181 1.00 55.14 O
ATOM 6 C5' G A 314 8.064 132.478 21.474 1.00 53.50 C
ATOM 7 C4' G A 314 9.512 132.423 21.904 1.00 52.86 C
ATOM 8 O4' G A 314 9.599 132.667 23.331 1.00 53.10 O
ATOM 9 C3' G A 314 10.215 131.089 21.708 1.00 51.92 C
ATOM 10 O3' G A 314 10.716 130.976 20.386 1.00 51.28 O
ATOM 11 C2' G A 314 11.344 131.173 22.724 1.00 53.15 C
ATOM 12 O2' G A 314 12.415 131.985 22.292 1.00 54.22 O
ATOM 13 C1' G A 314 10.652 131.894 23.880 1.00 54.49 C
ATOM 14 N9 G A 314 10.103 130.981 24.880 1.00 56.55 N
ATOM 15 C8 G A 314 8.779 130.689 25.116 1.00 55.91 C
ATOM 16 N7 G A 314 8.609 129.847 26.098 1.00 56.34 N
ATOM 17 C5 G A 314 9.898 129.561 26.533 1.00 57.28 C
ATOM 18 C6 G A 314 10.350 128.718 27.578 1.00 57.51 C
ATOM 19 O6 G A 314 9.684 128.031 28.355 1.00 59.59 O
ATOM 20 N1 G A 314 11.735 128.723 27.676 1.00 57.30 N
ATOM 21 C2 G A 314 12.581 129.445 26.878 1.00 56.43 C
ATOM 22 N2 G A 314 13.892 129.314 27.132 1.00 56.02 N
ATOM 23 N3 G A 314 12.175 130.236 25.905 1.00 56.18 N
ATOM 24 C4 G A 314 10.830 130.247 25.789 1.00 56.64 C
ATOM 25 P A A 315 10.935 129.526 19.728 1.00 52.90 P
ATOM 26 OP1 A A 315 11.564 129.732 18.397 1.00 50.86 O
ATOM 27 OP2 A A 315 9.658 128.772 19.841 1.00 52.91 O
ATOM 28 O5' A A 315 12.023 128.817 20.646 1.00 53.98 O
TER
ATOM 1 O3' U B 316 19.100 124.610 21.586 1.00 51.46 O
ATOM 2 P A B 317 18.629 124.495 23.123 1.00 52.00 P
ATOM 3 OP1 A B 317 19.490 123.466 23.766 1.00 49.82 O
ATOM 4 OP2 A B 317 17.154 124.328 23.137 1.00 52.12 O
ATOM 5 O5' A B 317 18.930 125.924 23.771 1.00 50.30 O
ATOM 6 C5' A B 317 20.085 126.138 24.612 1.00 47.94 C
ATOM 7 C4' A B 317 20.082 127.540 25.180 1.00 47.16 C
ATOM 8 O4' A B 317 19.992 128.494 24.086 1.00 48.49 O
ATOM 9 C3' A B 317 18.937 127.888 26.129 1.00 47.71 C
ATOM 10 O3' A B 317 19.353 128.915 27.047 1.00 48.60 O
ATOM 11 C2' A B 317 17.937 128.533 25.181 1.00 47.64 C
ATOM 12 O2' A B 317 17.039 129.397 25.835 1.00 47.79 O
ATOM 13 C1' A B 317 18.879 129.334 24.291 1.00 49.39 C
ATOM 14 N9 A B 317 18.353 129.757 22.993 1.00 52.64 N
ATOM 15 C8 A B 317 17.601 129.052 22.085 1.00 53.36 C
ATOM 16 N7 A B 317 17.285 129.739 21.014 1.00 54.47 N
ATOM 17 C5 A B 317 17.869 130.980 21.229 1.00 55.08 C
ATOM 18 C6 A B 317 17.901 132.157 20.463 1.00 55.11 C
ATOM 19 N6 A B 317 17.305 132.286 19.278 1.00 54.53 N
ATOM 20 N1 A B 317 18.575 133.215 20.965 1.00 56.38 N
ATOM 21 C2 A B 317 19.174 133.089 22.154 1.00 56.33 C
ATOM 22 N3 A B 317 19.214 132.038 22.968 1.00 55.90 N
ATOM 23 C4 A B 317 18.533 131.003 22.442 1.00 55.03 C
ATOM 24 P C B 318 20.141 128.543 28.405 1.00 48.48 P
ATOM 25 OP1 C B 318 20.097 129.772 29.239 1.00 46.25 O
ATOM 26 OP2 C B 318 21.455 127.935 28.051 1.00 44.43 O
ATOM 27 O5' C B 318 19.258 127.429 29.132 1.00 48.85 O
TER
Atoms:
OP1: (5.592,131.228,20.389)
OP2: (5.287,130.112,22.675)
C3': (10.215,131.089,21.708)
C1': (10.652,131.894,23.880)
C5': (8.064,132.478,21.474)
O6: (9.684,128.031,28.355)
O4': (9.599,132.667,23.331)
C8: (8.779,130.689,25.116)
C2: (12.581,129.445,26.878)
C6: (10.350,128.718,27.578)
C5: (9.898,129.561,26.533)
C4: (10.830,130.247,25.789)
P: (5.754,131.260,21.864)
C4': (9.512,132.423,21.904)
C2': (11.344,131.173,22.724)
O2': (12.415,131.985,22.292)
N1: (11.735,128.723,27.676)
N2: (13.892,129.314,27.132)
N3: (12.175,130.236,25.905)
N7: (8.609,129.847,26.098)
N9: (10.103,130.981,24.880)
O5': (7.297,131.488,22.181)
O3': (10.716,130.976,20.386)
OP2: (5.287,130.112,22.675)
C3': (10.215,131.089,21.708)
C1': (10.652,131.894,23.880)
C5': (8.064,132.478,21.474)
O6: (9.684,128.031,28.355)
O4': (9.599,132.667,23.331)
C8: (8.779,130.689,25.116)
C2: (12.581,129.445,26.878)
C6: (10.350,128.718,27.578)
C5: (9.898,129.561,26.533)
C4: (10.830,130.247,25.789)
P: (5.754,131.260,21.864)
C4': (9.512,132.423,21.904)
C2': (11.344,131.173,22.724)
O2': (12.415,131.985,22.292)
N1: (11.735,128.723,27.676)
N2: (13.892,129.314,27.132)
N3: (12.175,130.236,25.905)
N7: (8.609,129.847,26.098)
N9: (10.103,130.981,24.880)
O5': (7.297,131.488,22.181)
O3': (10.716,130.976,20.386)
OP1: (19.490,123.466,23.766)
OP2: (17.154,124.328,23.137)
C3': (18.937,127.888,26.129)
C1': (18.879,129.334,24.291)
C5': (20.085,126.138,24.612)
O4': (19.992,128.494,24.086)
C8: (17.601,129.052,22.085)
O2': (17.039,129.397,25.835)
C6: (17.901,132.157,20.463)
C5: (17.869,130.980,21.229)
C4: (18.533,131.003,22.442)
P: (18.629,124.495,23.123)
C4': (20.082,127.540,25.180)
C2': (17.937,128.533,25.181)
C2: (19.174,133.089,22.154)
N1: (18.575,133.215,20.965)
N3: (19.214,132.038,22.968)
N6: (17.305,132.286,19.278)
N7: (17.285,129.739,21.014)
N9: (18.353,129.757,22.993)
O5': (18.930,125.924,23.771)
O3': (19.353,128.915,27.047)
OP2: (17.154,124.328,23.137)
C3': (18.937,127.888,26.129)
C1': (18.879,129.334,24.291)
C5': (20.085,126.138,24.612)
O4': (19.992,128.494,24.086)
C8: (17.601,129.052,22.085)
O2': (17.039,129.397,25.835)
C6: (17.901,132.157,20.463)
C5: (17.869,130.980,21.229)
C4: (18.533,131.003,22.442)
P: (18.629,124.495,23.123)
C4': (20.082,127.540,25.180)
C2': (17.937,128.533,25.181)
C2: (19.174,133.089,22.154)
N1: (18.575,133.215,20.965)
N3: (19.214,132.038,22.968)
N6: (17.305,132.286,19.278)
N7: (17.285,129.739,21.014)
N9: (18.353,129.757,22.993)
O5': (18.930,125.924,23.771)
O3': (19.353,128.915,27.047)
Image (generated by PyMOL):