ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0314:0317

Extra

PDB:
ATOM 1 O3' U A 313 5.027 132.692 22.336 1.00 59.15 O
ATOM 2 P G A 314 5.695 131.334 21.795 1.00 58.42 P
ATOM 3 OP1 G A 314 5.497 131.301 20.332 1.00 59.98 O
ATOM 4 OP2 G A 314 5.215 130.205 22.621 1.00 59.49 O
ATOM 5 O5' G A 314 7.254 131.516 22.057 1.00 58.19 O
ATOM 6 C5' G A 314 8.006 132.545 21.387 1.00 55.19 C
ATOM 7 C4' G A 314 9.455 132.496 21.813 1.00 53.35 C
ATOM 8 O4' G A 314 9.554 132.750 23.235 1.00 53.10 O
ATOM 9 C3' G A 314 10.152 131.161 21.621 1.00 51.72 C
ATOM 10 O3' G A 314 10.657 131.070 20.306 1.00 52.36 O
ATOM 11 C2' G A 314 11.284 131.242 22.632 1.00 52.00 C
ATOM 12 O2' G A 314 12.344 132.058 22.188 1.00 51.82 O
ATOM 13 C1' G A 314 10.599 131.969 23.785 1.00 53.44 C
ATOM 14 N9 G A 314 10.040 131.082 24.802 1.00 54.66 N
ATOM 15 C8 G A 314 8.714 130.817 25.043 1.00 54.17 C
ATOM 16 N7 G A 314 8.528 130.021 26.058 1.00 54.70 N
ATOM 17 C5 G A 314 9.809 129.732 26.508 1.00 55.18 C
ATOM 18 C6 G A 314 10.243 128.935 27.594 1.00 55.62 C
ATOM 19 O6 G A 314 9.561 128.308 28.408 1.00 57.70 O
ATOM 20 N1 G A 314 11.627 128.913 27.691 1.00 55.02 N
ATOM 21 C2 G A 314 12.487 129.575 26.858 1.00 53.96 C
ATOM 22 N2 G A 314 13.793 129.420 27.113 1.00 54.40 N
ATOM 23 N3 G A 314 12.099 130.329 25.851 1.00 54.57 N
ATOM 24 C4 G A 314 10.754 130.364 25.735 1.00 54.88 C
ATOM 25 P A A 315 10.874 129.636 19.629 1.00 54.75 P
ATOM 26 OP1 A A 315 11.444 129.898 18.289 1.00 53.57 O
ATOM 27 OP2 A A 315 9.608 128.874 19.768 1.00 54.10 O
ATOM 28 O5' A A 315 11.992 128.916 20.506 1.00 55.43 O
TER

ATOM 1 O3' U B 316 19.083 124.707 21.512 1.00 55.08 O
ATOM 2 P A B 317 18.610 124.627 23.051 1.00 56.28 P
ATOM 3 OP1 A B 317 19.475 123.618 23.717 1.00 53.30 O
ATOM 4 OP2 A B 317 17.134 124.452 23.066 1.00 55.62 O
ATOM 5 O5' A B 317 18.899 126.075 23.660 1.00 54.80 O
ATOM 6 C5' A B 317 20.086 126.328 24.439 1.00 53.74 C
ATOM 7 C4' A B 317 20.058 127.719 25.028 1.00 52.01 C
ATOM 8 O4' A B 317 19.958 128.683 23.945 1.00 52.44 O
ATOM 9 C3' A B 317 18.907 128.033 25.981 1.00 51.49 C
ATOM 10 O3' A B 317 19.315 129.025 26.937 1.00 52.91 O
ATOM 11 C2' A B 317 17.907 128.703 25.048 1.00 51.35 C
ATOM 12 O2' A B 317 17.010 129.556 25.725 1.00 50.11 O
ATOM 13 C1' A B 317 18.849 129.522 24.172 1.00 52.75 C
ATOM 14 N9 A B 317 18.323 129.977 22.883 1.00 55.40 N
ATOM 15 C8 A B 317 17.571 129.288 21.960 1.00 56.01 C
ATOM 16 N7 A B 317 17.241 130.000 20.910 1.00 56.10 N
ATOM 17 C5 A B 317 17.818 131.241 21.152 1.00 56.21 C
ATOM 18 C6 A B 317 17.835 132.440 20.415 1.00 55.45 C
ATOM 19 N6 A B 317 17.233 132.596 19.234 1.00 53.70 N
ATOM 20 N1 A B 317 18.504 133.489 20.940 1.00 55.66 N
ATOM 21 C2 A B 317 19.114 133.334 22.121 1.00 55.78 C
ATOM 22 N3 A B 317 19.171 132.264 22.906 1.00 55.97 N
ATOM 23 C4 A B 317 18.494 131.238 22.360 1.00 56.42 C
ATOM 24 P C B 318 20.086 128.602 28.290 1.00 52.43 P
ATOM 25 OP1 C B 318 20.087 129.798 29.168 1.00 50.18 O
ATOM 26 OP2 C B 318 21.376 127.949 27.911 1.00 50.72 O
ATOM 27 O5' C B 318 19.160 127.523 29.006 1.00 52.32 O
TER

Atoms:
OP1: (5.497,131.301,20.332)
OP2: (5.215,130.205,22.621)
C3': (10.152,131.161,21.621)
C1': (10.599,131.969,23.785)
C5': (8.006,132.545,21.387)
O6: (9.561,128.308,28.408)
O4': (9.554,132.750,23.235)
C8: (8.714,130.817,25.043)
C2: (12.487,129.575,26.858)
C6: (10.243,128.935,27.594)
C5: (9.809,129.732,26.508)
C4: (10.754,130.364,25.735)
P: (5.695,131.334,21.795)
C4': (9.455,132.496,21.813)
C2': (11.284,131.242,22.632)
O2': (12.344,132.058,22.188)
N1: (11.627,128.913,27.691)
N2: (13.793,129.420,27.113)
N3: (12.099,130.329,25.851)
N7: (8.528,130.021,26.058)
N9: (10.040,131.082,24.802)
O5': (7.254,131.516,22.057)
O3': (10.657,131.070,20.306)
OP1: (19.475,123.618,23.717)
OP2: (17.134,124.452,23.066)
C3': (18.907,128.033,25.981)
C1': (18.849,129.522,24.172)
C5': (20.086,126.328,24.439)
O4': (19.958,128.683,23.945)
C8: (17.571,129.288,21.960)
O2': (17.010,129.556,25.725)
C6: (17.835,132.440,20.415)
C5: (17.818,131.241,21.152)
C4: (18.494,131.238,22.360)
P: (18.610,124.627,23.051)
C4': (20.058,127.719,25.028)
C2': (17.907,128.703,25.048)
C2: (19.114,133.334,22.121)
N1: (18.504,133.489,20.940)
N3: (19.171,132.264,22.906)
N6: (17.233,132.596,19.234)
N7: (17.241,130.000,20.910)
N9: (18.323,129.977,22.883)
O5': (18.899,126.075,23.660)
O3': (19.315,129.025,26.937)
Image (generated by PyMOL):
PyMOL image
show in jmol