ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJW:0314:0317

Extra

PDB:
ATOM 1 O3' U A 313 4.891 132.590 22.296 1.00 52.62 O
ATOM 2 P G A 314 5.519 131.208 21.765 1.00 52.11 P
ATOM 3 OP1 G A 314 5.322 131.159 20.299 1.00 53.33 O
ATOM 4 OP2 G A 314 4.993 130.109 22.612 1.00 52.34 O
ATOM 5 O5' G A 314 7.085 131.350 22.019 1.00 51.10 O
ATOM 6 C5' G A 314 7.847 132.376 21.356 1.00 48.32 C
ATOM 7 C4' G A 314 9.285 132.347 21.814 1.00 46.82 C
ATOM 8 O4' G A 314 9.346 132.569 23.244 1.00 47.52 O
ATOM 9 C3' G A 314 10.021 131.038 21.607 1.00 45.17 C
ATOM 10 O3' G A 314 10.540 130.982 20.294 1.00 44.62 O
ATOM 11 C2' G A 314 11.136 131.131 22.637 1.00 46.14 C
ATOM 12 O2' G A 314 12.181 131.989 22.234 1.00 45.54 O
ATOM 13 C1' G A 314 10.410 131.809 23.797 1.00 48.27 C
ATOM 14 N9 G A 314 9.859 130.878 24.781 1.00 50.10 N
ATOM 15 C8 G A 314 8.536 130.559 24.976 1.00 50.20 C
ATOM 16 N7 G A 314 8.351 129.730 25.965 1.00 50.48 N
ATOM 17 C5 G A 314 9.628 129.476 26.445 1.00 50.37 C
ATOM 18 C6 G A 314 10.056 128.660 27.516 1.00 50.83 C
ATOM 19 O6 G A 314 9.371 127.981 28.287 1.00 52.85 O
ATOM 20 N1 G A 314 11.439 128.681 27.653 1.00 49.99 N
ATOM 21 C2 G A 314 12.299 129.398 26.867 1.00 48.66 C
ATOM 22 N2 G A 314 13.600 129.272 27.150 1.00 48.48 N
ATOM 23 N3 G A 314 11.913 130.175 25.874 1.00 49.37 N
ATOM 24 C4 G A 314 10.571 130.166 25.719 1.00 49.86 C
ATOM 25 P A A 315 10.728 129.566 19.568 1.00 46.13 P
ATOM 26 OP1 A A 315 11.359 129.840 18.252 1.00 44.87 O
ATOM 27 OP2 A A 315 9.437 128.835 19.635 1.00 46.35 O
ATOM 28 O5' A A 315 11.794 128.791 20.460 1.00 46.73 O
TER

ATOM 1 O3' U B 316 18.905 124.575 21.494 1.00 44.79 O
ATOM 2 P A B 317 18.481 124.506 23.045 1.00 45.57 P
ATOM 3 OP1 A B 317 19.358 123.487 23.669 1.00 45.17 O
ATOM 4 OP2 A B 317 17.005 124.345 23.112 1.00 45.77 O
ATOM 5 O5' A B 317 18.823 125.946 23.647 1.00 44.67 O
ATOM 6 C5' A B 317 19.967 126.152 24.512 1.00 42.99 C
ATOM 7 C4' A B 317 19.965 127.555 25.084 1.00 42.09 C
ATOM 8 O4' A B 317 19.873 128.505 23.985 1.00 43.39 O
ATOM 9 C3' A B 317 18.818 127.904 26.033 1.00 42.53 C
ATOM 10 O3' A B 317 19.223 128.926 26.956 1.00 42.77 O
ATOM 11 C2' A B 317 17.817 128.554 25.085 1.00 43.33 C
ATOM 12 O2' A B 317 16.908 129.419 25.733 1.00 43.83 O
ATOM 13 C1' A B 317 18.759 129.346 24.186 1.00 43.96 C
ATOM 14 N9 A B 317 18.220 129.742 22.886 1.00 46.35 N
ATOM 15 C8 A B 317 17.460 129.016 22.002 1.00 47.70 C
ATOM 16 N7 A B 317 17.116 129.683 20.927 1.00 48.19 N
ATOM 17 C5 A B 317 17.693 130.932 21.113 1.00 48.81 C
ATOM 18 C6 A B 317 17.693 132.100 20.331 1.00 48.12 C
ATOM 19 N6 A B 317 17.058 132.212 19.165 1.00 48.59 N
ATOM 20 N1 A B 317 18.372 133.167 20.799 1.00 48.18 N
ATOM 21 C2 A B 317 19.001 133.062 21.975 1.00 49.89 C
ATOM 22 N3 A B 317 19.069 132.024 22.806 1.00 49.97 N
ATOM 23 C4 A B 317 18.384 130.978 22.310 1.00 48.94 C
ATOM 24 P C B 318 19.995 128.552 28.320 1.00 43.10 P
ATOM 25 OP1 C B 318 19.949 129.782 29.149 1.00 41.69 O
ATOM 26 OP2 C B 318 21.308 127.951 27.961 1.00 41.57 O
ATOM 27 O5' C B 318 19.105 127.443 29.048 1.00 42.76 O
TER

Atoms:
OP1: (5.322,131.159,20.299)
OP2: (4.993,130.109,22.612)
C3': (10.021,131.038,21.607)
C1': (10.410,131.809,23.797)
C5': (7.847,132.376,21.356)
O6: (9.371,127.981,28.287)
O4': (9.346,132.569,23.244)
C8: (8.536,130.559,24.976)
C2: (12.299,129.398,26.867)
C6: (10.056,128.660,27.516)
C5: (9.628,129.476,26.445)
C4: (10.571,130.166,25.719)
P: (5.519,131.208,21.765)
C4': (9.285,132.347,21.814)
C2': (11.136,131.131,22.637)
O2': (12.181,131.989,22.234)
N1: (11.439,128.681,27.653)
N2: (13.600,129.272,27.150)
N3: (11.913,130.175,25.874)
N7: (8.351,129.730,25.965)
N9: (9.859,130.878,24.781)
O5': (7.085,131.350,22.019)
O3': (10.540,130.982,20.294)
OP1: (19.358,123.487,23.669)
OP2: (17.005,124.345,23.112)
C3': (18.818,127.904,26.033)
C1': (18.759,129.346,24.186)
C5': (19.967,126.152,24.512)
O4': (19.873,128.505,23.985)
C8: (17.460,129.016,22.002)
O2': (16.908,129.419,25.733)
C6: (17.693,132.100,20.331)
C5: (17.693,130.932,21.113)
C4: (18.384,130.978,22.310)
P: (18.481,124.506,23.045)
C4': (19.965,127.555,25.084)
C2': (17.817,128.554,25.085)
C2: (19.001,133.062,21.975)
N1: (18.372,133.167,20.799)
N3: (19.069,132.024,22.806)
N6: (17.058,132.212,19.165)
N7: (17.116,129.683,20.927)
N9: (18.220,129.742,22.886)
O5': (18.823,125.946,23.647)
O3': (19.223,128.926,26.956)
Image (generated by PyMOL):
PyMOL image
show in jmol