Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3CD6:01235:01238
Extra
PDB:
ATOM 1 O3' C A1234 2.462 83.108 63.905 1.00 51.99 O
ATOM 2 P U A1235 3.370 82.840 62.619 1.00 54.93 P
ATOM 3 OP1 U A1235 2.480 82.361 61.530 1.00 54.64 O
ATOM 4 OP2 U A1235 4.509 81.996 63.065 1.00 51.67 O
ATOM 5 O5' U A1235 3.892 84.298 62.233 1.00 55.55 O
ATOM 6 C5' U A1235 2.952 85.332 61.874 1.00 57.39 C
ATOM 7 C4' U A1235 3.650 86.658 61.667 1.00 58.27 C
ATOM 8 O4' U A1235 4.179 87.150 62.923 1.00 59.70 O
ATOM 9 C3' U A1235 4.853 86.697 60.741 1.00 59.36 C
ATOM 10 O3' U A1235 4.492 86.728 59.373 1.00 59.76 O
ATOM 11 C2' U A1235 5.494 88.009 61.150 1.00 60.57 C
ATOM 12 O2' U A1235 4.760 89.108 60.647 1.00 61.29 O
ATOM 13 C1' U A1235 5.326 87.949 62.669 1.00 60.82 C
ATOM 14 N1 U A1235 6.489 87.330 63.327 1.00 62.61 N
ATOM 15 C2 U A1235 7.510 88.164 63.756 1.00 62.52 C
ATOM 16 O2 U A1235 7.481 89.376 63.615 1.00 62.86 O
ATOM 17 N3 U A1235 8.567 87.523 64.357 1.00 62.23 N
ATOM 18 C4 U A1235 8.706 86.165 64.570 1.00 62.47 C
ATOM 19 O4 U A1235 9.706 85.739 65.150 1.00 63.62 O
ATOM 20 C5 U A1235 7.615 85.374 64.099 1.00 62.56 C
ATOM 21 C6 U A1235 6.571 85.965 63.510 1.00 63.02 C
ATOM 22 P C A1236 5.378 85.922 58.306 1.00 59.70 P
ATOM 23 OP1 C A1236 4.631 85.856 57.023 1.00 60.02 O
ATOM 24 OP2 C A1236 5.832 84.668 58.950 1.00 60.05 O
ATOM 25 O5' C A1236 6.646 86.853 58.087 1.00 60.14 O
TER
ATOM 1 O3' A B1237 12.124 90.921 63.781 1.00 82.31 O
ATOM 2 P U B1238 11.779 90.030 65.078 1.00 88.55 P
ATOM 3 OP1 U B1238 12.605 88.792 65.002 1.00 87.61 O
ATOM 4 OP2 U B1238 10.301 89.918 65.218 1.00 88.82 O
ATOM 5 O5' U B1238 12.313 90.920 66.290 1.00 91.90 O
ATOM 6 C5' U B1238 11.889 92.296 66.432 1.00 96.48 C
ATOM 7 C4' U B1238 13.083 93.229 66.395 1.00 99.34 C
ATOM 8 O4' U B1238 14.205 92.574 65.750 1.00101.15 O
ATOM 9 C3' U B1238 12.847 94.510 65.607 1.00 99.81 C
ATOM 10 O3' U B1238 12.256 95.524 66.424 1.00 97.87 O
ATOM 11 C2' U B1238 14.252 94.875 65.131 1.00101.38 C
ATOM 12 O2' U B1238 15.012 95.566 66.105 1.00101.29 O
ATOM 13 C1' U B1238 14.877 93.488 64.902 1.00102.62 C
ATOM 14 N1 U B1238 14.891 92.905 63.543 1.00104.48 N
ATOM 15 C2 U B1238 14.728 93.725 62.420 1.00105.69 C
ATOM 16 O2 U B1238 14.564 94.937 62.479 1.00105.99 O
ATOM 17 N3 U B1238 14.766 93.060 61.215 1.00106.35 N
ATOM 18 C4 U B1238 14.946 91.703 61.010 1.00106.42 C
ATOM 19 O4 U B1238 14.945 91.257 59.860 1.00106.84 O
ATOM 20 C5 U B1238 15.105 90.935 62.205 1.00105.32 C
ATOM 21 C6 U B1238 15.074 91.541 63.394 1.00104.34 C
ATOM 22 P A B1239 10.656 95.717 66.441 1.00 97.04 P
ATOM 23 OP1 A B1239 10.351 96.770 67.443 1.00 97.54 O
ATOM 24 OP2 A B1239 10.011 94.388 66.565 1.00 97.21 O
ATOM 25 O5' A B1239 10.309 96.298 65.000 1.00 93.79 O
TER
ATOM 2 P U A1235 3.370 82.840 62.619 1.00 54.93 P
ATOM 3 OP1 U A1235 2.480 82.361 61.530 1.00 54.64 O
ATOM 4 OP2 U A1235 4.509 81.996 63.065 1.00 51.67 O
ATOM 5 O5' U A1235 3.892 84.298 62.233 1.00 55.55 O
ATOM 6 C5' U A1235 2.952 85.332 61.874 1.00 57.39 C
ATOM 7 C4' U A1235 3.650 86.658 61.667 1.00 58.27 C
ATOM 8 O4' U A1235 4.179 87.150 62.923 1.00 59.70 O
ATOM 9 C3' U A1235 4.853 86.697 60.741 1.00 59.36 C
ATOM 10 O3' U A1235 4.492 86.728 59.373 1.00 59.76 O
ATOM 11 C2' U A1235 5.494 88.009 61.150 1.00 60.57 C
ATOM 12 O2' U A1235 4.760 89.108 60.647 1.00 61.29 O
ATOM 13 C1' U A1235 5.326 87.949 62.669 1.00 60.82 C
ATOM 14 N1 U A1235 6.489 87.330 63.327 1.00 62.61 N
ATOM 15 C2 U A1235 7.510 88.164 63.756 1.00 62.52 C
ATOM 16 O2 U A1235 7.481 89.376 63.615 1.00 62.86 O
ATOM 17 N3 U A1235 8.567 87.523 64.357 1.00 62.23 N
ATOM 18 C4 U A1235 8.706 86.165 64.570 1.00 62.47 C
ATOM 19 O4 U A1235 9.706 85.739 65.150 1.00 63.62 O
ATOM 20 C5 U A1235 7.615 85.374 64.099 1.00 62.56 C
ATOM 21 C6 U A1235 6.571 85.965 63.510 1.00 63.02 C
ATOM 22 P C A1236 5.378 85.922 58.306 1.00 59.70 P
ATOM 23 OP1 C A1236 4.631 85.856 57.023 1.00 60.02 O
ATOM 24 OP2 C A1236 5.832 84.668 58.950 1.00 60.05 O
ATOM 25 O5' C A1236 6.646 86.853 58.087 1.00 60.14 O
TER
ATOM 1 O3' A B1237 12.124 90.921 63.781 1.00 82.31 O
ATOM 2 P U B1238 11.779 90.030 65.078 1.00 88.55 P
ATOM 3 OP1 U B1238 12.605 88.792 65.002 1.00 87.61 O
ATOM 4 OP2 U B1238 10.301 89.918 65.218 1.00 88.82 O
ATOM 5 O5' U B1238 12.313 90.920 66.290 1.00 91.90 O
ATOM 6 C5' U B1238 11.889 92.296 66.432 1.00 96.48 C
ATOM 7 C4' U B1238 13.083 93.229 66.395 1.00 99.34 C
ATOM 8 O4' U B1238 14.205 92.574 65.750 1.00101.15 O
ATOM 9 C3' U B1238 12.847 94.510 65.607 1.00 99.81 C
ATOM 10 O3' U B1238 12.256 95.524 66.424 1.00 97.87 O
ATOM 11 C2' U B1238 14.252 94.875 65.131 1.00101.38 C
ATOM 12 O2' U B1238 15.012 95.566 66.105 1.00101.29 O
ATOM 13 C1' U B1238 14.877 93.488 64.902 1.00102.62 C
ATOM 14 N1 U B1238 14.891 92.905 63.543 1.00104.48 N
ATOM 15 C2 U B1238 14.728 93.725 62.420 1.00105.69 C
ATOM 16 O2 U B1238 14.564 94.937 62.479 1.00105.99 O
ATOM 17 N3 U B1238 14.766 93.060 61.215 1.00106.35 N
ATOM 18 C4 U B1238 14.946 91.703 61.010 1.00106.42 C
ATOM 19 O4 U B1238 14.945 91.257 59.860 1.00106.84 O
ATOM 20 C5 U B1238 15.105 90.935 62.205 1.00105.32 C
ATOM 21 C6 U B1238 15.074 91.541 63.394 1.00104.34 C
ATOM 22 P A B1239 10.656 95.717 66.441 1.00 97.04 P
ATOM 23 OP1 A B1239 10.351 96.770 67.443 1.00 97.54 O
ATOM 24 OP2 A B1239 10.011 94.388 66.565 1.00 97.21 O
ATOM 25 O5' A B1239 10.309 96.298 65.000 1.00 93.79 O
TER
Atoms:
C4: (8.706,86.165,64.570)
N3: (8.567,87.523,64.357)
OP1: (2.480,82.361,61.530)
OP2: (4.509,81.996,63.065)
C2: (7.510,88.164,63.756)
C1': (5.326,87.949,62.669)
C3': (4.853,86.697,60.741)
O5': (3.892,84.298,62.233)
O4': (4.179,87.150,62.923)
C5': (2.952,85.332,61.874)
P: (3.370,82.840,62.619)
C4': (3.650,86.658,61.667)
C2': (5.494,88.009,61.150)
O2': (4.760,89.108,60.647)
N1: (6.489,87.330,63.327)
O4: (9.706,85.739,65.150)
O2: (7.481,89.376,63.615)
C6: (6.571,85.965,63.510)
C5: (7.615,85.374,64.099)
O3': (4.492,86.728,59.373)
N3: (8.567,87.523,64.357)
OP1: (2.480,82.361,61.530)
OP2: (4.509,81.996,63.065)
C2: (7.510,88.164,63.756)
C1': (5.326,87.949,62.669)
C3': (4.853,86.697,60.741)
O5': (3.892,84.298,62.233)
O4': (4.179,87.150,62.923)
C5': (2.952,85.332,61.874)
P: (3.370,82.840,62.619)
C4': (3.650,86.658,61.667)
C2': (5.494,88.009,61.150)
O2': (4.760,89.108,60.647)
N1: (6.489,87.330,63.327)
O4: (9.706,85.739,65.150)
O2: (7.481,89.376,63.615)
C6: (6.571,85.965,63.510)
C5: (7.615,85.374,64.099)
O3': (4.492,86.728,59.373)
C4: (14.946,91.703,61.010)
N3: (14.766,93.060,61.215)
OP1: (12.605,88.792,65.002)
OP2: (10.301,89.918,65.218)
C2: (14.728,93.725,62.420)
C1': (14.877,93.488,64.902)
C3': (12.847,94.510,65.607)
O5': (12.313,90.920,66.290)
O4': (14.205,92.574,65.750)
C5': (11.889,92.296,66.432)
P: (11.779,90.030,65.078)
C4': (13.083,93.229,66.395)
C2': (14.252,94.875,65.131)
O2': (15.012,95.566,66.105)
N1: (14.891,92.905,63.543)
O4: (14.945,91.257,59.860)
O2: (14.564,94.937,62.479)
C6: (15.074,91.541,63.394)
C5: (15.105,90.935,62.205)
O3': (12.256,95.524,66.424)
N3: (14.766,93.060,61.215)
OP1: (12.605,88.792,65.002)
OP2: (10.301,89.918,65.218)
C2: (14.728,93.725,62.420)
C1': (14.877,93.488,64.902)
C3': (12.847,94.510,65.607)
O5': (12.313,90.920,66.290)
O4': (14.205,92.574,65.750)
C5': (11.889,92.296,66.432)
P: (11.779,90.030,65.078)
C4': (13.083,93.229,66.395)
C2': (14.252,94.875,65.131)
O2': (15.012,95.566,66.105)
N1: (14.891,92.905,63.543)
O4: (14.945,91.257,59.860)
O2: (14.564,94.937,62.479)
C6: (15.074,91.541,63.394)
C5: (15.105,90.935,62.205)
O3': (12.256,95.524,66.424)
Image (generated by PyMOL):