Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:B55:B58
Extra
PDB:
ATOM 1 O3' G A 54 10.331 38.551 5.244 1.00 44.09 O
ATOM 2 P U A 55 10.796 37.105 5.744 1.00 44.94 P
ATOM 3 OP1 U A 55 11.152 37.210 7.178 1.00 48.52 O
ATOM 4 OP2 U A 55 11.778 36.573 4.773 1.00 41.98 O
ATOM 5 O5' U A 55 9.441 36.263 5.639 1.00 46.51 O
ATOM 6 C5' U A 55 8.298 36.701 6.362 1.00 44.56 C
ATOM 7 C4' U A 55 7.081 35.875 5.994 1.00 40.00 C
ATOM 8 O4' U A 55 6.756 36.070 4.595 1.00 42.36 O
ATOM 9 C3' U A 55 7.265 34.371 6.106 1.00 41.06 C
ATOM 10 O3' U A 55 7.157 33.951 7.463 1.00 45.31 O
ATOM 11 C2' U A 55 6.095 33.897 5.250 1.00 37.35 C
ATOM 12 O2' U A 55 4.852 34.023 5.912 1.00 34.51 O
ATOM 13 C1' U A 55 6.161 34.888 4.089 1.00 39.68 C
ATOM 14 N1 U A 55 6.953 34.380 2.933 1.00 38.53 N
ATOM 15 C2 U A 55 6.329 33.559 2.017 1.00 36.95 C
ATOM 16 O2 U A 55 5.160 33.236 2.110 1.00 34.39 O
ATOM 17 N3 U A 55 7.124 33.127 0.985 1.00 36.09 N
ATOM 18 C4 U A 55 8.458 33.433 0.782 1.00 39.20 C
ATOM 19 O4 U A 55 9.046 32.975 -0.193 1.00 37.57 O
ATOM 20 C5 U A 55 9.039 34.294 1.782 1.00 39.61 C
ATOM 21 C6 U A 55 8.282 34.726 2.798 1.00 38.51 C
ATOM 22 P A A 56 8.089 32.763 8.004 1.00 44.52 P
ATOM 23 OP1 A A 56 8.010 32.776 9.481 1.00 51.02 O
ATOM 24 OP2 A A 56 9.404 32.849 7.329 1.00 44.89 O
ATOM 25 O5' A A 56 7.340 31.453 7.476 1.00 41.20 O
TER
ATOM 1 O3' A B 57 4.352 29.783 -0.871 1.00 34.34 O
ATOM 2 P U B 58 4.810 30.950 -1.869 1.00 36.52 P
ATOM 3 OP1 U B 58 5.320 30.292 -3.090 1.00 30.07 O
ATOM 4 OP2 U B 58 5.664 31.900 -1.122 1.00 36.79 O
ATOM 5 O5' U B 58 3.436 31.687 -2.224 1.00 32.09 O
ATOM 6 C5' U B 58 2.452 31.031 -3.017 1.00 33.94 C
ATOM 7 C4' U B 58 1.110 31.731 -2.901 1.00 29.12 C
ATOM 8 O4' U B 58 0.643 31.662 -1.531 1.00 28.75 O
ATOM 9 C3' U B 58 1.110 33.226 -3.178 1.00 28.03 C
ATOM 10 O3' U B 58 1.126 33.504 -4.570 1.00 30.02 O
ATOM 11 C2' U B 58 -0.234 33.600 -2.566 1.00 30.94 C
ATOM 12 O2' U B 58 -1.320 33.226 -3.388 1.00 30.35 O
ATOM 13 C1' U B 58 -0.232 32.750 -1.297 1.00 30.02 C
ATOM 14 N1 U B 58 0.207 33.524 -0.103 1.00 30.32 N
ATOM 15 C2 U B 58 -0.763 34.098 0.682 1.00 29.10 C
ATOM 16 O2 U B 58 -1.951 33.989 0.440 1.00 30.80 O
ATOM 17 N3 U B 58 -0.296 34.799 1.764 1.00 32.54 N
ATOM 18 C4 U B 58 1.023 34.981 2.129 1.00 31.49 C
ATOM 19 O4 U B 58 1.287 35.641 3.130 1.00 35.38 O
ATOM 20 C5 U B 58 1.981 34.353 1.257 1.00 31.44 C
ATOM 21 C6 U B 58 1.547 33.663 0.194 1.00 31.55 C
ATOM 22 P G B 59 2.050 34.687 -5.129 1.00 32.22 P
ATOM 23 OP1 G B 59 1.973 34.650 -6.604 1.00 35.10 O
ATOM 24 OP2 G B 59 3.371 34.612 -4.463 1.00 29.02 O
ATOM 25 O5' G B 59 1.337 36.011 -4.596 1.00 27.21 O
TER
ATOM 2 P U A 55 10.796 37.105 5.744 1.00 44.94 P
ATOM 3 OP1 U A 55 11.152 37.210 7.178 1.00 48.52 O
ATOM 4 OP2 U A 55 11.778 36.573 4.773 1.00 41.98 O
ATOM 5 O5' U A 55 9.441 36.263 5.639 1.00 46.51 O
ATOM 6 C5' U A 55 8.298 36.701 6.362 1.00 44.56 C
ATOM 7 C4' U A 55 7.081 35.875 5.994 1.00 40.00 C
ATOM 8 O4' U A 55 6.756 36.070 4.595 1.00 42.36 O
ATOM 9 C3' U A 55 7.265 34.371 6.106 1.00 41.06 C
ATOM 10 O3' U A 55 7.157 33.951 7.463 1.00 45.31 O
ATOM 11 C2' U A 55 6.095 33.897 5.250 1.00 37.35 C
ATOM 12 O2' U A 55 4.852 34.023 5.912 1.00 34.51 O
ATOM 13 C1' U A 55 6.161 34.888 4.089 1.00 39.68 C
ATOM 14 N1 U A 55 6.953 34.380 2.933 1.00 38.53 N
ATOM 15 C2 U A 55 6.329 33.559 2.017 1.00 36.95 C
ATOM 16 O2 U A 55 5.160 33.236 2.110 1.00 34.39 O
ATOM 17 N3 U A 55 7.124 33.127 0.985 1.00 36.09 N
ATOM 18 C4 U A 55 8.458 33.433 0.782 1.00 39.20 C
ATOM 19 O4 U A 55 9.046 32.975 -0.193 1.00 37.57 O
ATOM 20 C5 U A 55 9.039 34.294 1.782 1.00 39.61 C
ATOM 21 C6 U A 55 8.282 34.726 2.798 1.00 38.51 C
ATOM 22 P A A 56 8.089 32.763 8.004 1.00 44.52 P
ATOM 23 OP1 A A 56 8.010 32.776 9.481 1.00 51.02 O
ATOM 24 OP2 A A 56 9.404 32.849 7.329 1.00 44.89 O
ATOM 25 O5' A A 56 7.340 31.453 7.476 1.00 41.20 O
TER
ATOM 1 O3' A B 57 4.352 29.783 -0.871 1.00 34.34 O
ATOM 2 P U B 58 4.810 30.950 -1.869 1.00 36.52 P
ATOM 3 OP1 U B 58 5.320 30.292 -3.090 1.00 30.07 O
ATOM 4 OP2 U B 58 5.664 31.900 -1.122 1.00 36.79 O
ATOM 5 O5' U B 58 3.436 31.687 -2.224 1.00 32.09 O
ATOM 6 C5' U B 58 2.452 31.031 -3.017 1.00 33.94 C
ATOM 7 C4' U B 58 1.110 31.731 -2.901 1.00 29.12 C
ATOM 8 O4' U B 58 0.643 31.662 -1.531 1.00 28.75 O
ATOM 9 C3' U B 58 1.110 33.226 -3.178 1.00 28.03 C
ATOM 10 O3' U B 58 1.126 33.504 -4.570 1.00 30.02 O
ATOM 11 C2' U B 58 -0.234 33.600 -2.566 1.00 30.94 C
ATOM 12 O2' U B 58 -1.320 33.226 -3.388 1.00 30.35 O
ATOM 13 C1' U B 58 -0.232 32.750 -1.297 1.00 30.02 C
ATOM 14 N1 U B 58 0.207 33.524 -0.103 1.00 30.32 N
ATOM 15 C2 U B 58 -0.763 34.098 0.682 1.00 29.10 C
ATOM 16 O2 U B 58 -1.951 33.989 0.440 1.00 30.80 O
ATOM 17 N3 U B 58 -0.296 34.799 1.764 1.00 32.54 N
ATOM 18 C4 U B 58 1.023 34.981 2.129 1.00 31.49 C
ATOM 19 O4 U B 58 1.287 35.641 3.130 1.00 35.38 O
ATOM 20 C5 U B 58 1.981 34.353 1.257 1.00 31.44 C
ATOM 21 C6 U B 58 1.547 33.663 0.194 1.00 31.55 C
ATOM 22 P G B 59 2.050 34.687 -5.129 1.00 32.22 P
ATOM 23 OP1 G B 59 1.973 34.650 -6.604 1.00 35.10 O
ATOM 24 OP2 G B 59 3.371 34.612 -4.463 1.00 29.02 O
ATOM 25 O5' G B 59 1.337 36.011 -4.596 1.00 27.21 O
TER
Atoms:
C4: (8.458,33.433,0.782)
N3: (7.124,33.127,0.985)
OP1: (11.152,37.210,7.178)
OP2: (11.778,36.573,4.773)
C2: (6.329,33.559,2.017)
C1': (6.161,34.888,4.089)
C3': (7.265,34.371,6.106)
O5': (9.441,36.263,5.639)
O4': (6.756,36.070,4.595)
C5': (8.298,36.701,6.362)
P: (10.796,37.105,5.744)
C4': (7.081,35.875,5.994)
C2': (6.095,33.897,5.250)
O2': (4.852,34.023,5.912)
N1: (6.953,34.380,2.933)
O4: (9.046,32.975,-0.193)
O2: (5.160,33.236,2.110)
C6: (8.282,34.726,2.798)
C5: (9.039,34.294,1.782)
O3': (7.157,33.951,7.463)
N3: (7.124,33.127,0.985)
OP1: (11.152,37.210,7.178)
OP2: (11.778,36.573,4.773)
C2: (6.329,33.559,2.017)
C1': (6.161,34.888,4.089)
C3': (7.265,34.371,6.106)
O5': (9.441,36.263,5.639)
O4': (6.756,36.070,4.595)
C5': (8.298,36.701,6.362)
P: (10.796,37.105,5.744)
C4': (7.081,35.875,5.994)
C2': (6.095,33.897,5.250)
O2': (4.852,34.023,5.912)
N1: (6.953,34.380,2.933)
O4: (9.046,32.975,-0.193)
O2: (5.160,33.236,2.110)
C6: (8.282,34.726,2.798)
C5: (9.039,34.294,1.782)
O3': (7.157,33.951,7.463)
C4: (1.023,34.981,2.129)
N3: (-0.296,34.799,1.764)
OP1: (5.320,30.292,-3.090)
OP2: (5.664,31.900,-1.122)
C2: (-0.763,34.098,0.682)
C1': (-0.232,32.750,-1.297)
C3': (1.110,33.226,-3.178)
O5': (3.436,31.687,-2.224)
O4': (0.643,31.662,-1.531)
C5': (2.452,31.031,-3.017)
P: (4.810,30.950,-1.869)
C4': (1.110,31.731,-2.901)
C2': (-0.234,33.600,-2.566)
O2': (-1.320,33.226,-3.388)
N1: (0.207,33.524,-0.103)
O4: (1.287,35.641,3.130)
O2: (-1.951,33.989,0.440)
C6: (1.547,33.663,0.194)
C5: (1.981,34.353,1.257)
O3': (1.126,33.504,-4.570)
N3: (-0.296,34.799,1.764)
OP1: (5.320,30.292,-3.090)
OP2: (5.664,31.900,-1.122)
C2: (-0.763,34.098,0.682)
C1': (-0.232,32.750,-1.297)
C3': (1.110,33.226,-3.178)
O5': (3.436,31.687,-2.224)
O4': (0.643,31.662,-1.531)
C5': (2.452,31.031,-3.017)
P: (4.810,30.950,-1.869)
C4': (1.110,31.731,-2.901)
C2': (-0.234,33.600,-2.566)
O2': (-1.320,33.226,-3.388)
N1: (0.207,33.524,-0.103)
O4: (1.287,35.641,3.130)
O2: (-1.951,33.989,0.440)
C6: (1.547,33.663,0.194)
C5: (1.981,34.353,1.257)
O3': (1.126,33.504,-4.570)
Image (generated by PyMOL):