Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:124:154
Extra
PDB:
ATOM 1 O3' A A 23 59.811 -18.362 108.682 1.00 46.03 O
ATOM 2 P C A 24 58.830 -19.588 109.008 1.00 42.11 P
ATOM 3 OP1 C A 24 58.609 -20.277 107.716 1.00 41.76 O
ATOM 4 OP2 C A 24 57.652 -19.041 109.757 1.00 42.16 O
ATOM 5 O5' C A 24 59.694 -20.513 109.969 1.00 42.54 O
ATOM 6 C5' C A 24 60.637 -21.420 109.437 1.00 42.56 C
ATOM 7 C4' C A 24 61.375 -22.137 110.521 1.00 43.01 C
ATOM 8 O4' C A 24 61.992 -21.169 111.409 1.00 43.29 O
ATOM 9 C3' C A 24 60.529 -22.993 111.427 1.00 43.25 C
ATOM 10 O3' C A 24 60.294 -24.268 110.888 1.00 43.17 O
ATOM 11 C2' C A 24 61.329 -23.039 112.707 1.00 43.74 C
ATOM 12 O2' C A 24 62.326 -24.039 112.602 1.00 43.92 O
ATOM 13 C1' C A 24 62.010 -21.661 112.727 1.00 43.72 C
ATOM 14 N1 C A 24 61.308 -20.688 113.598 1.00 43.84 N
ATOM 15 C2 C A 24 61.553 -20.677 114.966 1.00 44.31 C
ATOM 16 O2 C A 24 62.346 -21.489 115.435 1.00 44.62 O
ATOM 17 N3 C A 24 60.931 -19.789 115.764 1.00 44.43 N
ATOM 18 C4 C A 24 60.073 -18.941 115.228 1.00 44.11 C
ATOM 19 N4 C A 24 59.493 -18.079 116.059 1.00 44.26 N
ATOM 20 C5 C A 24 59.805 -18.911 113.843 1.00 43.63 C
ATOM 21 C6 C A 24 60.439 -19.783 113.077 1.00 43.51 C
ATOM 22 P C A 25 58.810 -24.899 110.959 1.00 37.49 P
ATOM 23 OP1 C A 25 58.853 -26.212 110.253 1.00 37.41 O
ATOM 24 OP2 C A 25 57.878 -23.855 110.477 1.00 37.15 O
ATOM 25 O5' C A 25 58.605 -25.118 112.516 1.00 37.95 O
TER
ATOM 1 O3' G B 53 51.226 -19.884 125.943 1.00 48.83 O
ATOM 2 P A B 54 52.538 -19.016 126.266 1.00 46.87 P
ATOM 3 OP1 A B 54 52.407 -18.559 127.671 1.00 47.39 O
ATOM 4 OP2 A B 54 52.690 -17.995 125.195 1.00 46.43 O
ATOM 5 O5' A B 54 53.698 -20.091 126.165 1.00 47.00 O
ATOM 6 C5' A B 54 54.892 -19.816 125.492 1.00 46.84 C
ATOM 7 C4' A B 54 55.658 -21.074 125.269 1.00 46.91 C
ATOM 8 O4' A B 54 55.227 -21.687 124.051 1.00 46.44 O
ATOM 9 C3' A B 54 57.140 -20.920 125.087 1.00 47.00 C
ATOM 10 O3' A B 54 57.824 -20.771 126.313 1.00 47.55 O
ATOM 11 C2' A B 54 57.505 -22.178 124.340 1.00 46.84 C
ATOM 12 O2' A B 54 57.550 -23.272 125.232 1.00 47.26 O
ATOM 13 C1' A B 54 56.295 -22.333 123.428 1.00 46.37 C
ATOM 14 N9 A B 54 56.505 -21.671 122.136 1.00 45.87 N
ATOM 15 C8 A B 54 55.817 -20.598 121.650 1.00 45.55 C
ATOM 16 N7 A B 54 56.257 -20.226 120.486 1.00 45.16 N
ATOM 17 C5 A B 54 57.285 -21.103 120.192 1.00 45.22 C
ATOM 18 C6 A B 54 58.137 -21.206 119.102 1.00 44.95 C
ATOM 19 N6 A B 54 58.153 -20.423 118.036 1.00 44.53 N
ATOM 20 N1 A B 54 59.013 -22.190 119.151 1.00 45.13 N
ATOM 21 C2 A B 54 59.070 -23.018 120.215 1.00 45.57 C
ATOM 22 N3 A B 54 58.346 -23.017 121.320 1.00 45.88 N
ATOM 23 C4 A B 54 57.452 -22.008 121.210 1.00 45.67 C
ATOM 24 P G B 55 59.039 -19.746 126.414 1.00 48.00 P
ATOM 25 OP1 G B 55 59.331 -19.575 127.860 1.00 48.60 O
ATOM 26 OP2 G B 55 58.693 -18.546 125.597 1.00 47.58 O
ATOM 27 O5' G B 55 60.201 -20.564 125.726 1.00 47.92 O
TER
ATOM 2 P C A 24 58.830 -19.588 109.008 1.00 42.11 P
ATOM 3 OP1 C A 24 58.609 -20.277 107.716 1.00 41.76 O
ATOM 4 OP2 C A 24 57.652 -19.041 109.757 1.00 42.16 O
ATOM 5 O5' C A 24 59.694 -20.513 109.969 1.00 42.54 O
ATOM 6 C5' C A 24 60.637 -21.420 109.437 1.00 42.56 C
ATOM 7 C4' C A 24 61.375 -22.137 110.521 1.00 43.01 C
ATOM 8 O4' C A 24 61.992 -21.169 111.409 1.00 43.29 O
ATOM 9 C3' C A 24 60.529 -22.993 111.427 1.00 43.25 C
ATOM 10 O3' C A 24 60.294 -24.268 110.888 1.00 43.17 O
ATOM 11 C2' C A 24 61.329 -23.039 112.707 1.00 43.74 C
ATOM 12 O2' C A 24 62.326 -24.039 112.602 1.00 43.92 O
ATOM 13 C1' C A 24 62.010 -21.661 112.727 1.00 43.72 C
ATOM 14 N1 C A 24 61.308 -20.688 113.598 1.00 43.84 N
ATOM 15 C2 C A 24 61.553 -20.677 114.966 1.00 44.31 C
ATOM 16 O2 C A 24 62.346 -21.489 115.435 1.00 44.62 O
ATOM 17 N3 C A 24 60.931 -19.789 115.764 1.00 44.43 N
ATOM 18 C4 C A 24 60.073 -18.941 115.228 1.00 44.11 C
ATOM 19 N4 C A 24 59.493 -18.079 116.059 1.00 44.26 N
ATOM 20 C5 C A 24 59.805 -18.911 113.843 1.00 43.63 C
ATOM 21 C6 C A 24 60.439 -19.783 113.077 1.00 43.51 C
ATOM 22 P C A 25 58.810 -24.899 110.959 1.00 37.49 P
ATOM 23 OP1 C A 25 58.853 -26.212 110.253 1.00 37.41 O
ATOM 24 OP2 C A 25 57.878 -23.855 110.477 1.00 37.15 O
ATOM 25 O5' C A 25 58.605 -25.118 112.516 1.00 37.95 O
TER
ATOM 1 O3' G B 53 51.226 -19.884 125.943 1.00 48.83 O
ATOM 2 P A B 54 52.538 -19.016 126.266 1.00 46.87 P
ATOM 3 OP1 A B 54 52.407 -18.559 127.671 1.00 47.39 O
ATOM 4 OP2 A B 54 52.690 -17.995 125.195 1.00 46.43 O
ATOM 5 O5' A B 54 53.698 -20.091 126.165 1.00 47.00 O
ATOM 6 C5' A B 54 54.892 -19.816 125.492 1.00 46.84 C
ATOM 7 C4' A B 54 55.658 -21.074 125.269 1.00 46.91 C
ATOM 8 O4' A B 54 55.227 -21.687 124.051 1.00 46.44 O
ATOM 9 C3' A B 54 57.140 -20.920 125.087 1.00 47.00 C
ATOM 10 O3' A B 54 57.824 -20.771 126.313 1.00 47.55 O
ATOM 11 C2' A B 54 57.505 -22.178 124.340 1.00 46.84 C
ATOM 12 O2' A B 54 57.550 -23.272 125.232 1.00 47.26 O
ATOM 13 C1' A B 54 56.295 -22.333 123.428 1.00 46.37 C
ATOM 14 N9 A B 54 56.505 -21.671 122.136 1.00 45.87 N
ATOM 15 C8 A B 54 55.817 -20.598 121.650 1.00 45.55 C
ATOM 16 N7 A B 54 56.257 -20.226 120.486 1.00 45.16 N
ATOM 17 C5 A B 54 57.285 -21.103 120.192 1.00 45.22 C
ATOM 18 C6 A B 54 58.137 -21.206 119.102 1.00 44.95 C
ATOM 19 N6 A B 54 58.153 -20.423 118.036 1.00 44.53 N
ATOM 20 N1 A B 54 59.013 -22.190 119.151 1.00 45.13 N
ATOM 21 C2 A B 54 59.070 -23.018 120.215 1.00 45.57 C
ATOM 22 N3 A B 54 58.346 -23.017 121.320 1.00 45.88 N
ATOM 23 C4 A B 54 57.452 -22.008 121.210 1.00 45.67 C
ATOM 24 P G B 55 59.039 -19.746 126.414 1.00 48.00 P
ATOM 25 OP1 G B 55 59.331 -19.575 127.860 1.00 48.60 O
ATOM 26 OP2 G B 55 58.693 -18.546 125.597 1.00 47.58 O
ATOM 27 O5' G B 55 60.201 -20.564 125.726 1.00 47.92 O
TER
Atoms:
C2: (61.553,-20.677,114.966)
OP1: (58.609,-20.277,107.716)
OP2: (57.652,-19.041,109.757)
C4: (60.073,-18.941,115.228)
O5': (59.694,-20.513,109.969)
C3': (60.529,-22.993,111.427)
C1': (62.010,-21.661,112.727)
O4': (61.992,-21.169,111.409)
C5': (60.637,-21.420,109.437)
P: (58.830,-19.588,109.008)
O2: (62.346,-21.489,115.435)
C4': (61.375,-22.137,110.521)
C2': (61.329,-23.039,112.707)
O2': (62.326,-24.039,112.602)
N1: (61.308,-20.688,113.598)
N3: (60.931,-19.789,115.764)
N4: (59.493,-18.079,116.059)
C6: (60.439,-19.783,113.077)
C5: (59.805,-18.911,113.843)
O3': (60.294,-24.268,110.888)
OP1: (58.609,-20.277,107.716)
OP2: (57.652,-19.041,109.757)
C4: (60.073,-18.941,115.228)
O5': (59.694,-20.513,109.969)
C3': (60.529,-22.993,111.427)
C1': (62.010,-21.661,112.727)
O4': (61.992,-21.169,111.409)
C5': (60.637,-21.420,109.437)
P: (58.830,-19.588,109.008)
O2: (62.346,-21.489,115.435)
C4': (61.375,-22.137,110.521)
C2': (61.329,-23.039,112.707)
O2': (62.326,-24.039,112.602)
N1: (61.308,-20.688,113.598)
N3: (60.931,-19.789,115.764)
N4: (59.493,-18.079,116.059)
C6: (60.439,-19.783,113.077)
C5: (59.805,-18.911,113.843)
O3': (60.294,-24.268,110.888)
OP1: (52.407,-18.559,127.671)
OP2: (52.690,-17.995,125.195)
C3': (57.140,-20.920,125.087)
C1': (56.295,-22.333,123.428)
C5': (54.892,-19.816,125.492)
O4': (55.227,-21.687,124.051)
C8: (55.817,-20.598,121.650)
O2': (57.550,-23.272,125.232)
C6: (58.137,-21.206,119.102)
C5: (57.285,-21.103,120.192)
C4: (57.452,-22.008,121.210)
P: (52.538,-19.016,126.266)
C4': (55.658,-21.074,125.269)
C2': (57.505,-22.178,124.340)
C2: (59.070,-23.018,120.215)
N1: (59.013,-22.190,119.151)
N3: (58.346,-23.017,121.320)
N6: (58.153,-20.423,118.036)
N7: (56.257,-20.226,120.486)
N9: (56.505,-21.671,122.136)
O5': (53.698,-20.091,126.165)
O3': (57.824,-20.771,126.313)
OP2: (52.690,-17.995,125.195)
C3': (57.140,-20.920,125.087)
C1': (56.295,-22.333,123.428)
C5': (54.892,-19.816,125.492)
O4': (55.227,-21.687,124.051)
C8: (55.817,-20.598,121.650)
O2': (57.550,-23.272,125.232)
C6: (58.137,-21.206,119.102)
C5: (57.285,-21.103,120.192)
C4: (57.452,-22.008,121.210)
P: (52.538,-19.016,126.266)
C4': (55.658,-21.074,125.269)
C2': (57.505,-22.178,124.340)
C2: (59.070,-23.018,120.215)
N1: (59.013,-22.190,119.151)
N3: (58.346,-23.017,121.320)
N6: (58.153,-20.423,118.036)
N7: (56.257,-20.226,120.486)
N9: (56.505,-21.671,122.136)
O5': (53.698,-20.091,126.165)
O3': (57.824,-20.771,126.313)
Image (generated by PyMOL):