Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1913:11056
Extra
PDB:
ATOM 1 O3' G A 912 55.407 -35.166 53.022 1.00 34.13 O
ATOM 2 P C A 913 56.941 -34.781 53.135 1.00 32.34 P
ATOM 3 OP1 C A 913 57.641 -35.449 52.051 1.00 32.59 O
ATOM 4 OP2 C A 913 57.344 -35.056 54.533 1.00 32.31 O
ATOM 5 O5' C A 913 56.920 -33.236 52.867 1.00 32.10 O
ATOM 6 C5' C A 913 56.717 -32.699 51.576 1.00 32.10 C
ATOM 7 C4' C A 913 56.596 -31.206 51.673 1.00 31.86 C
ATOM 8 O4' C A 913 55.548 -30.885 52.614 1.00 31.67 O
ATOM 9 C3' C A 913 57.797 -30.498 52.230 1.00 31.78 C
ATOM 10 O3' C A 913 58.754 -30.236 51.229 1.00 31.89 O
ATOM 11 C2' C A 913 57.199 -29.247 52.852 1.00 31.52 C
ATOM 12 O2' C A 913 56.947 -28.271 51.867 1.00 31.45 O
ATOM 13 C1' C A 913 55.859 -29.739 53.337 1.00 31.47 C
ATOM 14 N1 C A 913 55.877 -30.083 54.736 1.00 31.42 N
ATOM 15 C2 C A 913 55.330 -29.181 55.648 1.00 31.20 C
ATOM 16 O2 C A 913 54.879 -28.148 55.179 1.00 31.07 O
ATOM 17 N3 C A 913 55.325 -29.454 56.982 1.00 31.17 N
ATOM 18 C4 C A 913 55.876 -30.607 57.350 1.00 31.34 C
ATOM 19 N4 C A 913 55.909 -30.901 58.622 1.00 31.33 N
ATOM 20 C5 C A 913 56.417 -31.551 56.449 1.00 31.57 C
ATOM 21 C6 C A 913 56.407 -31.265 55.154 1.00 31.60 C
ATOM 22 P A A 914 60.306 -30.506 51.477 1.00 33.00 P
ATOM 23 OP1 A A 914 61.025 -30.025 50.275 1.00 33.09 O
ATOM 24 OP2 A A 914 60.467 -31.898 51.898 1.00 33.19 O
ATOM 25 O5' A A 914 60.602 -29.545 52.678 1.00 32.79 O
TER
ATOM 1 O3' U B1055 60.272 -29.757 67.511 1.00 36.02 O
ATOM 2 P A B1056 58.897 -29.301 66.818 1.00 33.32 P
ATOM 3 OP1 A B1056 57.904 -28.979 67.901 1.00 33.22 O
ATOM 4 OP2 A B1056 58.552 -30.354 65.817 1.00 33.43 O
ATOM 5 O5' A B1056 59.349 -27.984 66.039 1.00 33.18 O
ATOM 6 C5' A B1056 60.064 -26.944 66.662 1.00 33.12 C
ATOM 7 C4' A B1056 60.443 -25.904 65.644 1.00 33.02 C
ATOM 8 O4' A B1056 60.940 -26.562 64.486 1.00 33.13 O
ATOM 9 C3' A B1056 59.330 -25.094 65.080 1.00 32.83 C
ATOM 10 O3' A B1056 58.927 -24.055 65.925 1.00 32.70 O
ATOM 11 C2' A B1056 59.909 -24.606 63.785 1.00 32.83 C
ATOM 12 O2' A B1056 60.779 -23.557 64.053 1.00 32.79 O
ATOM 13 C1' A B1056 60.739 -25.774 63.363 1.00 33.03 C
ATOM 14 N9 A B1056 60.113 -26.609 62.341 1.00 33.08 N
ATOM 15 C8 A B1056 59.824 -27.929 62.555 1.00 33.22 C
ATOM 16 N7 A B1056 59.308 -28.560 61.529 1.00 33.27 N
ATOM 17 C5 A B1056 59.298 -27.582 60.584 1.00 33.17 C
ATOM 18 C6 A B1056 58.896 -27.654 59.281 1.00 33.18 C
ATOM 19 N6 A B1056 58.404 -28.791 58.778 1.00 33.31 N
ATOM 20 N1 A B1056 59.025 -26.528 58.545 1.00 33.08 N
ATOM 21 C2 A B1056 59.498 -25.442 59.114 1.00 32.97 C
ATOM 22 N3 A B1056 59.914 -25.275 60.345 1.00 32.95 N
ATOM 23 C4 A B1056 59.798 -26.390 61.036 1.00 33.05 C
ATOM 24 P G B1057 57.384 -23.769 66.067 1.00 31.31 P
ATOM 25 OP1 G B1057 57.215 -22.692 67.035 1.00 31.21 O
ATOM 26 OP2 G B1057 56.756 -25.029 66.325 1.00 31.40 O
ATOM 27 O5' G B1057 57.002 -23.254 64.617 1.00 31.23 O
TER
ATOM 2 P C A 913 56.941 -34.781 53.135 1.00 32.34 P
ATOM 3 OP1 C A 913 57.641 -35.449 52.051 1.00 32.59 O
ATOM 4 OP2 C A 913 57.344 -35.056 54.533 1.00 32.31 O
ATOM 5 O5' C A 913 56.920 -33.236 52.867 1.00 32.10 O
ATOM 6 C5' C A 913 56.717 -32.699 51.576 1.00 32.10 C
ATOM 7 C4' C A 913 56.596 -31.206 51.673 1.00 31.86 C
ATOM 8 O4' C A 913 55.548 -30.885 52.614 1.00 31.67 O
ATOM 9 C3' C A 913 57.797 -30.498 52.230 1.00 31.78 C
ATOM 10 O3' C A 913 58.754 -30.236 51.229 1.00 31.89 O
ATOM 11 C2' C A 913 57.199 -29.247 52.852 1.00 31.52 C
ATOM 12 O2' C A 913 56.947 -28.271 51.867 1.00 31.45 O
ATOM 13 C1' C A 913 55.859 -29.739 53.337 1.00 31.47 C
ATOM 14 N1 C A 913 55.877 -30.083 54.736 1.00 31.42 N
ATOM 15 C2 C A 913 55.330 -29.181 55.648 1.00 31.20 C
ATOM 16 O2 C A 913 54.879 -28.148 55.179 1.00 31.07 O
ATOM 17 N3 C A 913 55.325 -29.454 56.982 1.00 31.17 N
ATOM 18 C4 C A 913 55.876 -30.607 57.350 1.00 31.34 C
ATOM 19 N4 C A 913 55.909 -30.901 58.622 1.00 31.33 N
ATOM 20 C5 C A 913 56.417 -31.551 56.449 1.00 31.57 C
ATOM 21 C6 C A 913 56.407 -31.265 55.154 1.00 31.60 C
ATOM 22 P A A 914 60.306 -30.506 51.477 1.00 33.00 P
ATOM 23 OP1 A A 914 61.025 -30.025 50.275 1.00 33.09 O
ATOM 24 OP2 A A 914 60.467 -31.898 51.898 1.00 33.19 O
ATOM 25 O5' A A 914 60.602 -29.545 52.678 1.00 32.79 O
TER
ATOM 1 O3' U B1055 60.272 -29.757 67.511 1.00 36.02 O
ATOM 2 P A B1056 58.897 -29.301 66.818 1.00 33.32 P
ATOM 3 OP1 A B1056 57.904 -28.979 67.901 1.00 33.22 O
ATOM 4 OP2 A B1056 58.552 -30.354 65.817 1.00 33.43 O
ATOM 5 O5' A B1056 59.349 -27.984 66.039 1.00 33.18 O
ATOM 6 C5' A B1056 60.064 -26.944 66.662 1.00 33.12 C
ATOM 7 C4' A B1056 60.443 -25.904 65.644 1.00 33.02 C
ATOM 8 O4' A B1056 60.940 -26.562 64.486 1.00 33.13 O
ATOM 9 C3' A B1056 59.330 -25.094 65.080 1.00 32.83 C
ATOM 10 O3' A B1056 58.927 -24.055 65.925 1.00 32.70 O
ATOM 11 C2' A B1056 59.909 -24.606 63.785 1.00 32.83 C
ATOM 12 O2' A B1056 60.779 -23.557 64.053 1.00 32.79 O
ATOM 13 C1' A B1056 60.739 -25.774 63.363 1.00 33.03 C
ATOM 14 N9 A B1056 60.113 -26.609 62.341 1.00 33.08 N
ATOM 15 C8 A B1056 59.824 -27.929 62.555 1.00 33.22 C
ATOM 16 N7 A B1056 59.308 -28.560 61.529 1.00 33.27 N
ATOM 17 C5 A B1056 59.298 -27.582 60.584 1.00 33.17 C
ATOM 18 C6 A B1056 58.896 -27.654 59.281 1.00 33.18 C
ATOM 19 N6 A B1056 58.404 -28.791 58.778 1.00 33.31 N
ATOM 20 N1 A B1056 59.025 -26.528 58.545 1.00 33.08 N
ATOM 21 C2 A B1056 59.498 -25.442 59.114 1.00 32.97 C
ATOM 22 N3 A B1056 59.914 -25.275 60.345 1.00 32.95 N
ATOM 23 C4 A B1056 59.798 -26.390 61.036 1.00 33.05 C
ATOM 24 P G B1057 57.384 -23.769 66.067 1.00 31.31 P
ATOM 25 OP1 G B1057 57.215 -22.692 67.035 1.00 31.21 O
ATOM 26 OP2 G B1057 56.756 -25.029 66.325 1.00 31.40 O
ATOM 27 O5' G B1057 57.002 -23.254 64.617 1.00 31.23 O
TER
Atoms:
C2: (55.330,-29.181,55.648)
OP1: (57.641,-35.449,52.051)
OP2: (57.344,-35.056,54.533)
C4: (55.876,-30.607,57.350)
O5': (56.920,-33.236,52.867)
C3': (57.797,-30.498,52.230)
C1': (55.859,-29.739,53.337)
O4': (55.548,-30.885,52.614)
C5': (56.717,-32.699,51.576)
P: (56.941,-34.781,53.135)
O2: (54.879,-28.148,55.179)
C4': (56.596,-31.206,51.673)
C2': (57.199,-29.247,52.852)
O2': (56.947,-28.271,51.867)
N1: (55.877,-30.083,54.736)
N3: (55.325,-29.454,56.982)
N4: (55.909,-30.901,58.622)
C6: (56.407,-31.265,55.154)
C5: (56.417,-31.551,56.449)
O3': (58.754,-30.236,51.229)
OP1: (57.641,-35.449,52.051)
OP2: (57.344,-35.056,54.533)
C4: (55.876,-30.607,57.350)
O5': (56.920,-33.236,52.867)
C3': (57.797,-30.498,52.230)
C1': (55.859,-29.739,53.337)
O4': (55.548,-30.885,52.614)
C5': (56.717,-32.699,51.576)
P: (56.941,-34.781,53.135)
O2: (54.879,-28.148,55.179)
C4': (56.596,-31.206,51.673)
C2': (57.199,-29.247,52.852)
O2': (56.947,-28.271,51.867)
N1: (55.877,-30.083,54.736)
N3: (55.325,-29.454,56.982)
N4: (55.909,-30.901,58.622)
C6: (56.407,-31.265,55.154)
C5: (56.417,-31.551,56.449)
O3': (58.754,-30.236,51.229)
OP1: (57.904,-28.979,67.901)
OP2: (58.552,-30.354,65.817)
C3': (59.330,-25.094,65.080)
C1': (60.739,-25.774,63.363)
C5': (60.064,-26.944,66.662)
O4': (60.940,-26.562,64.486)
C8: (59.824,-27.929,62.555)
O2': (60.779,-23.557,64.053)
C6: (58.896,-27.654,59.281)
C5: (59.298,-27.582,60.584)
C4: (59.798,-26.390,61.036)
P: (58.897,-29.301,66.818)
C4': (60.443,-25.904,65.644)
C2': (59.909,-24.606,63.785)
C2: (59.498,-25.442,59.114)
N1: (59.025,-26.528,58.545)
N3: (59.914,-25.275,60.345)
N6: (58.404,-28.791,58.778)
N7: (59.308,-28.560,61.529)
N9: (60.113,-26.609,62.341)
O5': (59.349,-27.984,66.039)
O3': (58.927,-24.055,65.925)
OP2: (58.552,-30.354,65.817)
C3': (59.330,-25.094,65.080)
C1': (60.739,-25.774,63.363)
C5': (60.064,-26.944,66.662)
O4': (60.940,-26.562,64.486)
C8: (59.824,-27.929,62.555)
O2': (60.779,-23.557,64.053)
C6: (58.896,-27.654,59.281)
C5: (59.298,-27.582,60.584)
C4: (59.798,-26.390,61.036)
P: (58.897,-29.301,66.818)
C4': (60.443,-25.904,65.644)
C2': (59.909,-24.606,63.785)
C2: (59.498,-25.442,59.114)
N1: (59.025,-26.528,58.545)
N3: (59.914,-25.275,60.345)
N6: (58.404,-28.791,58.778)
N7: (59.308,-28.560,61.529)
N9: (60.113,-26.609,62.341)
O5': (59.349,-27.984,66.039)
O3': (58.927,-24.055,65.925)
Image (generated by PyMOL):