ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A1960:A1961

Extra

PDB:
ATOM 1 O3' G A1959 109.473 122.900 94.349 1.00 46.75 O
ATOM 2 P G A1960 109.456 123.775 95.695 1.00 45.73 P
ATOM 3 OP1 G A1960 108.280 123.323 96.451 1.00 45.09 O
ATOM 4 OP2 G A1960 109.635 125.223 95.388 1.00 43.61 O
ATOM 5 O5' G A1960 110.724 123.276 96.503 1.00 46.26 O
ATOM 6 C5' G A1960 110.644 122.089 97.303 1.00 47.08 C
ATOM 7 C4' G A1960 111.757 122.066 98.315 1.00 47.80 C
ATOM 8 O4' G A1960 113.023 121.925 97.640 1.00 48.10 O
ATOM 9 C3' G A1960 111.900 123.328 99.148 1.00 47.69 C
ATOM 10 O3' G A1960 111.055 123.285 100.272 1.00 48.01 O
ATOM 11 C2' G A1960 113.351 123.275 99.569 1.00 48.39 C
ATOM 12 O2' G A1960 113.557 122.422 100.685 1.00 50.03 O
ATOM 13 C1' G A1960 113.990 122.696 98.313 1.00 48.90 C
ATOM 14 N9 G A1960 114.354 123.814 97.463 1.00 49.33 N
ATOM 15 C8 G A1960 113.711 124.290 96.352 1.00 49.86 C
ATOM 16 N7 G A1960 114.317 125.311 95.812 1.00 49.74 N
ATOM 17 C5 G A1960 115.415 125.518 96.628 1.00 49.31 C
ATOM 18 C6 G A1960 116.447 126.458 96.538 1.00 49.02 C
ATOM 19 O6 G A1960 116.605 127.330 95.692 1.00 49.88 O
ATOM 20 N1 G A1960 117.374 126.306 97.563 1.00 49.76 N
ATOM 21 C2 G A1960 117.311 125.348 98.541 1.00 51.29 C
ATOM 22 N2 G A1960 118.313 125.315 99.432 1.00 53.26 N
ATOM 23 N3 G A1960 116.338 124.468 98.637 1.00 51.35 N
ATOM 24 C4 G A1960 115.438 124.606 97.652 1.00 49.93 C
ATOM 25 P A A1961 110.484 124.644 100.903 1.00 49.42 P
ATOM 26 OP1 A A1961 109.524 124.179 101.918 1.00 49.31 O
ATOM 27 OP2 A A1961 110.048 125.609 99.854 1.00 48.65 O
ATOM 28 O5' A A1961 111.724 125.261 101.671 1.00 51.54 O
TER

ATOM 1 O3' G B1960 111.055 123.285 100.272 1.00 48.01 O
ATOM 2 P A B1961 110.484 124.644 100.903 1.00 49.42 P
ATOM 3 OP1 A B1961 109.524 124.179 101.918 1.00 49.31 O
ATOM 4 OP2 A B1961 110.048 125.609 99.854 1.00 48.65 O
ATOM 5 O5' A B1961 111.724 125.261 101.671 1.00 51.54 O
ATOM 6 C5' A B1961 112.343 124.561 102.758 1.00 53.27 C
ATOM 7 C4' A B1961 113.638 125.252 103.116 1.00 55.58 C
ATOM 8 O4' A B1961 114.561 125.175 102.003 1.00 56.29 O
ATOM 9 C3' A B1961 113.521 126.741 103.357 1.00 56.39 C
ATOM 10 O3' A B1961 113.092 126.939 104.675 1.00 61.74 O
ATOM 11 C2' A B1961 114.932 127.241 103.099 1.00 54.95 C
ATOM 12 O2' A B1961 115.825 127.024 104.177 1.00 55.76 O
ATOM 13 C1' A B1961 115.348 126.346 101.948 1.00 55.10 C
ATOM 14 N9 A B1961 115.041 127.043 100.719 1.00 55.44 N
ATOM 15 C8 A B1961 113.929 126.936 99.938 1.00 56.45 C
ATOM 16 N7 A B1961 113.936 127.735 98.903 1.00 56.94 N
ATOM 17 C5 A B1961 115.144 128.405 99.012 1.00 56.60 C
ATOM 18 C6 A B1961 115.752 129.389 98.221 1.00 56.37 C
ATOM 19 N6 A B1961 115.194 129.886 97.121 1.00 55.62 N
ATOM 20 N1 A B1961 116.959 129.851 98.605 1.00 54.81 N
ATOM 21 C2 A B1961 117.502 129.351 99.712 1.00 56.21 C
ATOM 22 N3 A B1961 117.028 128.423 100.541 1.00 57.05 N
ATOM 23 C4 A B1961 115.832 127.987 100.126 1.00 56.17 C
ATOM 24 P U B1962 112.149 128.187 105.026 1.00 65.69 P
ATOM 25 OP1 U B1962 111.908 128.080 106.472 1.00 67.54 O
ATOM 26 OP2 U B1962 110.981 128.228 104.085 1.00 67.01 O
ATOM 27 O5' U B1962 113.099 129.436 104.827 1.00 65.76 O
TER

Atoms:
OP1: (108.280,123.323,96.451)
OP2: (109.635,125.223,95.388)
C3': (111.900,123.328,99.148)
C1': (113.990,122.696,98.313)
C5': (110.644,122.089,97.303)
O6: (116.605,127.330,95.692)
O4': (113.023,121.925,97.640)
C8: (113.711,124.290,96.352)
C2: (117.311,125.348,98.541)
C6: (116.447,126.458,96.538)
C5: (115.415,125.518,96.628)
C4: (115.438,124.606,97.652)
P: (109.456,123.775,95.695)
C4': (111.757,122.066,98.315)
C2': (113.351,123.275,99.569)
O2': (113.557,122.422,100.685)
N1: (117.374,126.306,97.563)
N2: (118.313,125.315,99.432)
N3: (116.338,124.468,98.637)
N7: (114.317,125.311,95.812)
N9: (114.354,123.814,97.463)
O5': (110.724,123.276,96.503)
O3': (111.055,123.285,100.272)
OP1: (109.524,124.179,101.918)
OP2: (110.048,125.609,99.854)
C3': (113.521,126.741,103.357)
C1': (115.348,126.346,101.948)
C5': (112.343,124.561,102.758)
O4': (114.561,125.175,102.003)
C8: (113.929,126.936,99.938)
O2': (115.825,127.024,104.177)
C6: (115.752,129.389,98.221)
C5: (115.144,128.405,99.012)
C4: (115.832,127.987,100.126)
P: (110.484,124.644,100.903)
C4': (113.638,125.252,103.116)
C2': (114.932,127.241,103.099)
C2: (117.502,129.351,99.712)
N1: (116.959,129.851,98.605)
N3: (117.028,128.423,100.541)
N6: (115.194,129.886,97.121)
N7: (113.936,127.735,98.903)
N9: (115.041,127.043,100.719)
O5': (111.724,125.261,101.671)
O3': (113.092,126.939,104.675)
Image (generated by PyMOL):
PyMOL image
show in jmol