Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y1:Y2
Extra
PDB:
ATOM 1 P G A 1 39.789 7.571 59.130 1.00 37.33 P
ATOM 2 OP1 G A 1 39.320 7.788 57.742 1.00 36.99 O
ATOM 3 OP2 G A 1 38.843 7.107 60.171 1.00 36.85 O
ATOM 4 O5' G A 1 41.032 6.560 59.114 1.00 36.93 O
ATOM 5 C5' G A 1 42.210 6.908 58.392 1.00 35.97 C
ATOM 6 C4' G A 1 43.326 5.915 58.655 1.00 35.48 C
ATOM 7 O4' G A 1 43.774 6.017 60.031 1.00 35.34 O
ATOM 8 C3' G A 1 42.941 4.453 58.522 1.00 35.37 C
ATOM 9 O3' G A 1 42.898 4.058 57.154 1.00 35.28 O
ATOM 10 C2' G A 1 44.100 3.809 59.275 1.00 35.07 C
ATOM 11 O2' G A 1 45.304 3.849 58.533 1.00 35.26 O
ATOM 12 C1' G A 1 44.206 4.743 60.476 1.00 34.59 C
ATOM 13 N9 G A 1 43.396 4.335 61.623 1.00 34.47 N
ATOM 14 C8 G A 1 42.237 4.923 62.070 1.00 33.60 C
ATOM 15 N7 G A 1 41.735 4.342 63.124 1.00 33.77 N
ATOM 16 C5 G A 1 42.610 3.295 63.394 1.00 33.83 C
ATOM 17 C6 G A 1 42.586 2.321 64.422 1.00 33.58 C
ATOM 18 O6 G A 1 41.755 2.174 65.329 1.00 34.19 O
ATOM 19 N1 G A 1 43.666 1.445 64.335 1.00 33.92 N
ATOM 20 C2 G A 1 44.650 1.508 63.376 1.00 33.81 C
ATOM 21 N2 G A 1 45.612 0.578 63.453 1.00 33.71 N
ATOM 22 N3 G A 1 44.686 2.418 62.410 1.00 33.84 N
ATOM 23 C4 G A 1 43.639 3.277 62.478 1.00 33.76 C
ATOM 24 P A A 2 41.856 2.934 56.692 1.00 34.92 P
ATOM 25 OP1 A A 2 41.921 2.826 55.218 1.00 35.38 O
ATOM 26 OP2 A A 2 40.561 3.206 57.354 1.00 35.46 O
ATOM 27 O5' A A 2 42.455 1.597 57.339 1.00 34.99 O
TER
ATOM 1 O3' G B 1 42.898 4.058 57.154 1.00 35.28 O
ATOM 2 P A B 2 41.856 2.934 56.692 1.00 34.92 P
ATOM 3 OP1 A B 2 41.921 2.826 55.218 1.00 35.38 O
ATOM 4 OP2 A B 2 40.561 3.206 57.354 1.00 35.46 O
ATOM 5 O5' A B 2 42.455 1.597 57.339 1.00 34.99 O
ATOM 6 C5' A B 2 43.722 1.105 56.919 1.00 35.11 C
ATOM 7 C4' A B 2 44.152 -0.076 57.769 1.00 35.00 C
ATOM 8 O4' A B 2 44.357 0.345 59.143 1.00 34.95 O
ATOM 9 C3' A B 2 43.130 -1.197 57.870 1.00 35.18 C
ATOM 10 O3' A B 2 43.227 -2.052 56.741 1.00 35.53 O
ATOM 11 C2' A B 2 43.592 -1.888 59.145 1.00 34.78 C
ATOM 12 O2' A B 2 44.758 -2.660 58.931 1.00 36.36 O
ATOM 13 C1' A B 2 43.913 -0.679 60.017 1.00 34.51 C
ATOM 14 N9 A B 2 42.769 -0.179 60.782 1.00 33.38 N
ATOM 15 C8 A B 2 41.938 0.853 60.447 1.00 33.49 C
ATOM 16 N7 A B 2 40.994 1.087 61.329 1.00 32.43 N
ATOM 17 C5 A B 2 41.225 0.144 62.316 1.00 32.77 C
ATOM 18 C6 A B 2 40.568 -0.136 63.533 1.00 32.58 C
ATOM 19 N6 A B 2 39.502 0.547 63.970 1.00 33.26 N
ATOM 20 N1 A B 2 41.051 -1.144 64.285 1.00 32.67 N
ATOM 21 C2 A B 2 42.118 -1.828 63.848 1.00 32.02 C
ATOM 22 N3 A B 2 42.819 -1.656 62.727 1.00 32.49 N
ATOM 23 C4 A B 2 42.315 -0.645 61.996 1.00 32.99 C
ATOM 24 P C B 3 41.904 -2.705 56.123 1.00 35.50 P
ATOM 25 OP1 C B 3 42.245 -3.250 54.790 1.00 36.21 O
ATOM 26 OP2 C B 3 40.802 -1.727 56.270 1.00 35.80 O
ATOM 27 O5' C B 3 41.610 -3.924 57.114 1.00 36.01 O
TER
ATOM 2 OP1 G A 1 39.320 7.788 57.742 1.00 36.99 O
ATOM 3 OP2 G A 1 38.843 7.107 60.171 1.00 36.85 O
ATOM 4 O5' G A 1 41.032 6.560 59.114 1.00 36.93 O
ATOM 5 C5' G A 1 42.210 6.908 58.392 1.00 35.97 C
ATOM 6 C4' G A 1 43.326 5.915 58.655 1.00 35.48 C
ATOM 7 O4' G A 1 43.774 6.017 60.031 1.00 35.34 O
ATOM 8 C3' G A 1 42.941 4.453 58.522 1.00 35.37 C
ATOM 9 O3' G A 1 42.898 4.058 57.154 1.00 35.28 O
ATOM 10 C2' G A 1 44.100 3.809 59.275 1.00 35.07 C
ATOM 11 O2' G A 1 45.304 3.849 58.533 1.00 35.26 O
ATOM 12 C1' G A 1 44.206 4.743 60.476 1.00 34.59 C
ATOM 13 N9 G A 1 43.396 4.335 61.623 1.00 34.47 N
ATOM 14 C8 G A 1 42.237 4.923 62.070 1.00 33.60 C
ATOM 15 N7 G A 1 41.735 4.342 63.124 1.00 33.77 N
ATOM 16 C5 G A 1 42.610 3.295 63.394 1.00 33.83 C
ATOM 17 C6 G A 1 42.586 2.321 64.422 1.00 33.58 C
ATOM 18 O6 G A 1 41.755 2.174 65.329 1.00 34.19 O
ATOM 19 N1 G A 1 43.666 1.445 64.335 1.00 33.92 N
ATOM 20 C2 G A 1 44.650 1.508 63.376 1.00 33.81 C
ATOM 21 N2 G A 1 45.612 0.578 63.453 1.00 33.71 N
ATOM 22 N3 G A 1 44.686 2.418 62.410 1.00 33.84 N
ATOM 23 C4 G A 1 43.639 3.277 62.478 1.00 33.76 C
ATOM 24 P A A 2 41.856 2.934 56.692 1.00 34.92 P
ATOM 25 OP1 A A 2 41.921 2.826 55.218 1.00 35.38 O
ATOM 26 OP2 A A 2 40.561 3.206 57.354 1.00 35.46 O
ATOM 27 O5' A A 2 42.455 1.597 57.339 1.00 34.99 O
TER
ATOM 1 O3' G B 1 42.898 4.058 57.154 1.00 35.28 O
ATOM 2 P A B 2 41.856 2.934 56.692 1.00 34.92 P
ATOM 3 OP1 A B 2 41.921 2.826 55.218 1.00 35.38 O
ATOM 4 OP2 A B 2 40.561 3.206 57.354 1.00 35.46 O
ATOM 5 O5' A B 2 42.455 1.597 57.339 1.00 34.99 O
ATOM 6 C5' A B 2 43.722 1.105 56.919 1.00 35.11 C
ATOM 7 C4' A B 2 44.152 -0.076 57.769 1.00 35.00 C
ATOM 8 O4' A B 2 44.357 0.345 59.143 1.00 34.95 O
ATOM 9 C3' A B 2 43.130 -1.197 57.870 1.00 35.18 C
ATOM 10 O3' A B 2 43.227 -2.052 56.741 1.00 35.53 O
ATOM 11 C2' A B 2 43.592 -1.888 59.145 1.00 34.78 C
ATOM 12 O2' A B 2 44.758 -2.660 58.931 1.00 36.36 O
ATOM 13 C1' A B 2 43.913 -0.679 60.017 1.00 34.51 C
ATOM 14 N9 A B 2 42.769 -0.179 60.782 1.00 33.38 N
ATOM 15 C8 A B 2 41.938 0.853 60.447 1.00 33.49 C
ATOM 16 N7 A B 2 40.994 1.087 61.329 1.00 32.43 N
ATOM 17 C5 A B 2 41.225 0.144 62.316 1.00 32.77 C
ATOM 18 C6 A B 2 40.568 -0.136 63.533 1.00 32.58 C
ATOM 19 N6 A B 2 39.502 0.547 63.970 1.00 33.26 N
ATOM 20 N1 A B 2 41.051 -1.144 64.285 1.00 32.67 N
ATOM 21 C2 A B 2 42.118 -1.828 63.848 1.00 32.02 C
ATOM 22 N3 A B 2 42.819 -1.656 62.727 1.00 32.49 N
ATOM 23 C4 A B 2 42.315 -0.645 61.996 1.00 32.99 C
ATOM 24 P C B 3 41.904 -2.705 56.123 1.00 35.50 P
ATOM 25 OP1 C B 3 42.245 -3.250 54.790 1.00 36.21 O
ATOM 26 OP2 C B 3 40.802 -1.727 56.270 1.00 35.80 O
ATOM 27 O5' C B 3 41.610 -3.924 57.114 1.00 36.01 O
TER
Atoms:
OP1: (39.320,7.788,57.742)
OP2: (38.843,7.107,60.171)
C3': (42.941,4.453,58.522)
C1': (44.206,4.743,60.476)
C5': (42.210,6.908,58.392)
O6: (41.755,2.174,65.329)
O4': (43.774,6.017,60.031)
C8: (42.237,4.923,62.070)
C2: (44.650,1.508,63.376)
C6: (42.586,2.321,64.422)
C5: (42.610,3.295,63.394)
C4: (43.639,3.277,62.478)
P: (39.789,7.571,59.130)
C4': (43.326,5.915,58.655)
C2': (44.100,3.809,59.275)
O2': (45.304,3.849,58.533)
N1: (43.666,1.445,64.335)
N2: (45.612,0.578,63.453)
N3: (44.686,2.418,62.410)
N7: (41.735,4.342,63.124)
N9: (43.396,4.335,61.623)
O5': (41.032,6.560,59.114)
O3': (42.898,4.058,57.154)
OP2: (38.843,7.107,60.171)
C3': (42.941,4.453,58.522)
C1': (44.206,4.743,60.476)
C5': (42.210,6.908,58.392)
O6: (41.755,2.174,65.329)
O4': (43.774,6.017,60.031)
C8: (42.237,4.923,62.070)
C2: (44.650,1.508,63.376)
C6: (42.586,2.321,64.422)
C5: (42.610,3.295,63.394)
C4: (43.639,3.277,62.478)
P: (39.789,7.571,59.130)
C4': (43.326,5.915,58.655)
C2': (44.100,3.809,59.275)
O2': (45.304,3.849,58.533)
N1: (43.666,1.445,64.335)
N2: (45.612,0.578,63.453)
N3: (44.686,2.418,62.410)
N7: (41.735,4.342,63.124)
N9: (43.396,4.335,61.623)
O5': (41.032,6.560,59.114)
O3': (42.898,4.058,57.154)
OP1: (41.921,2.826,55.218)
OP2: (40.561,3.206,57.354)
C3': (43.130,-1.197,57.870)
C1': (43.913,-0.679,60.017)
C5': (43.722,1.105,56.919)
O4': (44.357,0.345,59.143)
C8: (41.938,0.853,60.447)
O2': (44.758,-2.660,58.931)
C6: (40.568,-0.136,63.533)
C5: (41.225,0.144,62.316)
C4: (42.315,-0.645,61.996)
P: (41.856,2.934,56.692)
C4': (44.152,-0.076,57.769)
C2': (43.592,-1.888,59.145)
C2: (42.118,-1.828,63.848)
N1: (41.051,-1.144,64.285)
N3: (42.819,-1.656,62.727)
N6: (39.502,0.547,63.970)
N7: (40.994,1.087,61.329)
N9: (42.769,-0.179,60.782)
O5': (42.455,1.597,57.339)
O3': (43.227,-2.052,56.741)
OP2: (40.561,3.206,57.354)
C3': (43.130,-1.197,57.870)
C1': (43.913,-0.679,60.017)
C5': (43.722,1.105,56.919)
O4': (44.357,0.345,59.143)
C8: (41.938,0.853,60.447)
O2': (44.758,-2.660,58.931)
C6: (40.568,-0.136,63.533)
C5: (41.225,0.144,62.316)
C4: (42.315,-0.645,61.996)
P: (41.856,2.934,56.692)
C4': (44.152,-0.076,57.769)
C2': (43.592,-1.888,59.145)
C2: (42.118,-1.828,63.848)
N1: (41.051,-1.144,64.285)
N3: (42.819,-1.656,62.727)
N6: (39.502,0.547,63.970)
N7: (40.994,1.087,61.329)
N9: (42.769,-0.179,60.782)
O5': (42.455,1.597,57.339)
O3': (43.227,-2.052,56.741)
Image (generated by PyMOL):