Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQP:0560:0561
Extra
PDB:
ATOM 1 O3' C A 559 -9.366 97.732 125.617 1.00 76.91 O
ATOM 2 P G A 560 -9.161 96.683 126.819 1.00 79.30 P
ATOM 3 OP1 G A 560 -9.511 97.388 128.079 1.00 78.64 O
ATOM 4 OP2 G A 560 -7.821 96.057 126.681 1.00 78.84 O
ATOM 5 O5' G A 560 -10.264 95.567 126.530 1.00 79.61 O
ATOM 6 C5' G A 560 -11.668 95.901 126.541 1.00 81.22 C
ATOM 7 C4' G A 560 -12.496 94.746 126.020 1.00 81.66 C
ATOM 8 O4' G A 560 -12.180 94.509 124.623 1.00 80.53 O
ATOM 9 C3' G A 560 -12.259 93.400 126.684 1.00 82.51 C
ATOM 10 O3' G A 560 -12.957 93.274 127.921 1.00 85.61 O
ATOM 11 C2' G A 560 -12.757 92.430 125.622 1.00 81.09 C
ATOM 12 O2' G A 560 -14.166 92.308 125.598 1.00 80.71 O
ATOM 13 C1' G A 560 -12.276 93.120 124.342 1.00 79.44 C
ATOM 14 N9 G A 560 -10.963 92.645 123.912 1.00 77.11 N
ATOM 15 C8 G A 560 -9.753 93.280 124.077 1.00 75.71 C
ATOM 16 N7 G A 560 -8.745 92.591 123.616 1.00 75.18 N
ATOM 17 C5 G A 560 -9.322 91.434 123.109 1.00 74.95 C
ATOM 18 C6 G A 560 -8.727 90.305 122.483 1.00 74.95 C
ATOM 19 O6 G A 560 -7.531 90.094 122.247 1.00 74.92 O
ATOM 20 N1 G A 560 -9.680 89.358 122.123 1.00 73.63 N
ATOM 21 C2 G A 560 -11.027 89.475 122.337 1.00 72.90 C
ATOM 22 N2 G A 560 -11.775 88.447 121.924 1.00 72.28 N
ATOM 23 N3 G A 560 -11.597 90.520 122.915 1.00 73.76 N
ATOM 24 C4 G A 560 -10.690 91.455 123.275 1.00 75.10 C
ATOM 25 P A A 561 -12.374 92.307 129.069 1.00 87.96 P
ATOM 26 OP1 A A 561 -13.290 92.433 130.232 1.00 88.58 O
ATOM 27 OP2 A A 561 -10.921 92.581 129.250 1.00 87.27 O
ATOM 28 O5' A A 561 -12.530 90.842 128.458 1.00 85.95 O
TER
ATOM 1 O3' G B 560 -12.957 93.274 127.921 1.00 85.61 O
ATOM 2 P A B 561 -12.374 92.307 129.069 1.00 87.96 P
ATOM 3 OP1 A B 561 -13.290 92.433 130.232 1.00 88.58 O
ATOM 4 OP2 A B 561 -10.921 92.581 129.250 1.00 87.27 O
ATOM 5 O5' A B 561 -12.530 90.842 128.458 1.00 85.95 O
ATOM 6 C5' A B 561 -13.826 90.224 128.344 1.00 85.52 C
ATOM 7 C4' A B 561 -13.693 88.828 127.786 1.00 85.50 C
ATOM 8 O4' A B 561 -13.132 88.906 126.449 1.00 85.58 O
ATOM 9 C3' A B 561 -12.738 87.899 128.521 1.00 86.28 C
ATOM 10 O3' A B 561 -13.308 87.314 129.690 1.00 86.99 O
ATOM 11 C2' A B 561 -12.401 86.875 127.444 1.00 85.74 C
ATOM 12 O2' A B 561 -13.411 85.905 127.241 1.00 84.92 O
ATOM 13 C1' A B 561 -12.300 87.776 126.210 1.00 85.17 C
ATOM 14 N9 A B 561 -10.927 88.241 125.991 1.00 83.07 N
ATOM 15 C8 A B 561 -10.351 89.418 126.411 1.00 82.72 C
ATOM 16 N7 A B 561 -9.085 89.530 126.093 1.00 81.88 N
ATOM 17 C5 A B 561 -8.807 88.353 125.411 1.00 81.37 C
ATOM 18 C6 A B 561 -7.631 87.858 124.817 1.00 80.75 C
ATOM 19 N6 A B 561 -6.464 88.508 124.828 1.00 80.50 N
ATOM 20 N1 A B 561 -7.694 86.652 124.209 1.00 79.89 N
ATOM 21 C2 A B 561 -8.860 85.994 124.210 1.00 80.44 C
ATOM 22 N3 A B 561 -10.030 86.351 124.739 1.00 80.36 N
ATOM 23 C4 A B 561 -9.935 87.555 125.331 1.00 81.58 C
ATOM 24 P C B 562 -12.353 86.883 130.914 1.00 86.86 P
ATOM 25 OP1 C B 562 -13.239 86.379 131.992 1.00 88.39 O
ATOM 26 OP2 C B 562 -11.406 87.988 131.208 1.00 86.47 O
ATOM 27 O5' C B 562 -11.521 85.654 130.337 1.00 86.12 O
TER
ATOM 2 P G A 560 -9.161 96.683 126.819 1.00 79.30 P
ATOM 3 OP1 G A 560 -9.511 97.388 128.079 1.00 78.64 O
ATOM 4 OP2 G A 560 -7.821 96.057 126.681 1.00 78.84 O
ATOM 5 O5' G A 560 -10.264 95.567 126.530 1.00 79.61 O
ATOM 6 C5' G A 560 -11.668 95.901 126.541 1.00 81.22 C
ATOM 7 C4' G A 560 -12.496 94.746 126.020 1.00 81.66 C
ATOM 8 O4' G A 560 -12.180 94.509 124.623 1.00 80.53 O
ATOM 9 C3' G A 560 -12.259 93.400 126.684 1.00 82.51 C
ATOM 10 O3' G A 560 -12.957 93.274 127.921 1.00 85.61 O
ATOM 11 C2' G A 560 -12.757 92.430 125.622 1.00 81.09 C
ATOM 12 O2' G A 560 -14.166 92.308 125.598 1.00 80.71 O
ATOM 13 C1' G A 560 -12.276 93.120 124.342 1.00 79.44 C
ATOM 14 N9 G A 560 -10.963 92.645 123.912 1.00 77.11 N
ATOM 15 C8 G A 560 -9.753 93.280 124.077 1.00 75.71 C
ATOM 16 N7 G A 560 -8.745 92.591 123.616 1.00 75.18 N
ATOM 17 C5 G A 560 -9.322 91.434 123.109 1.00 74.95 C
ATOM 18 C6 G A 560 -8.727 90.305 122.483 1.00 74.95 C
ATOM 19 O6 G A 560 -7.531 90.094 122.247 1.00 74.92 O
ATOM 20 N1 G A 560 -9.680 89.358 122.123 1.00 73.63 N
ATOM 21 C2 G A 560 -11.027 89.475 122.337 1.00 72.90 C
ATOM 22 N2 G A 560 -11.775 88.447 121.924 1.00 72.28 N
ATOM 23 N3 G A 560 -11.597 90.520 122.915 1.00 73.76 N
ATOM 24 C4 G A 560 -10.690 91.455 123.275 1.00 75.10 C
ATOM 25 P A A 561 -12.374 92.307 129.069 1.00 87.96 P
ATOM 26 OP1 A A 561 -13.290 92.433 130.232 1.00 88.58 O
ATOM 27 OP2 A A 561 -10.921 92.581 129.250 1.00 87.27 O
ATOM 28 O5' A A 561 -12.530 90.842 128.458 1.00 85.95 O
TER
ATOM 1 O3' G B 560 -12.957 93.274 127.921 1.00 85.61 O
ATOM 2 P A B 561 -12.374 92.307 129.069 1.00 87.96 P
ATOM 3 OP1 A B 561 -13.290 92.433 130.232 1.00 88.58 O
ATOM 4 OP2 A B 561 -10.921 92.581 129.250 1.00 87.27 O
ATOM 5 O5' A B 561 -12.530 90.842 128.458 1.00 85.95 O
ATOM 6 C5' A B 561 -13.826 90.224 128.344 1.00 85.52 C
ATOM 7 C4' A B 561 -13.693 88.828 127.786 1.00 85.50 C
ATOM 8 O4' A B 561 -13.132 88.906 126.449 1.00 85.58 O
ATOM 9 C3' A B 561 -12.738 87.899 128.521 1.00 86.28 C
ATOM 10 O3' A B 561 -13.308 87.314 129.690 1.00 86.99 O
ATOM 11 C2' A B 561 -12.401 86.875 127.444 1.00 85.74 C
ATOM 12 O2' A B 561 -13.411 85.905 127.241 1.00 84.92 O
ATOM 13 C1' A B 561 -12.300 87.776 126.210 1.00 85.17 C
ATOM 14 N9 A B 561 -10.927 88.241 125.991 1.00 83.07 N
ATOM 15 C8 A B 561 -10.351 89.418 126.411 1.00 82.72 C
ATOM 16 N7 A B 561 -9.085 89.530 126.093 1.00 81.88 N
ATOM 17 C5 A B 561 -8.807 88.353 125.411 1.00 81.37 C
ATOM 18 C6 A B 561 -7.631 87.858 124.817 1.00 80.75 C
ATOM 19 N6 A B 561 -6.464 88.508 124.828 1.00 80.50 N
ATOM 20 N1 A B 561 -7.694 86.652 124.209 1.00 79.89 N
ATOM 21 C2 A B 561 -8.860 85.994 124.210 1.00 80.44 C
ATOM 22 N3 A B 561 -10.030 86.351 124.739 1.00 80.36 N
ATOM 23 C4 A B 561 -9.935 87.555 125.331 1.00 81.58 C
ATOM 24 P C B 562 -12.353 86.883 130.914 1.00 86.86 P
ATOM 25 OP1 C B 562 -13.239 86.379 131.992 1.00 88.39 O
ATOM 26 OP2 C B 562 -11.406 87.988 131.208 1.00 86.47 O
ATOM 27 O5' C B 562 -11.521 85.654 130.337 1.00 86.12 O
TER
Atoms:
OP1: (-9.511,97.388,128.079)
OP2: (-7.821,96.057,126.681)
C3': (-12.259,93.400,126.684)
C1': (-12.276,93.120,124.342)
C5': (-11.668,95.901,126.541)
O6: (-7.531,90.094,122.247)
O4': (-12.180,94.509,124.623)
C8: (-9.753,93.280,124.077)
C2: (-11.027,89.475,122.337)
C6: (-8.727,90.305,122.483)
C5: (-9.322,91.434,123.109)
C4: (-10.690,91.455,123.275)
P: (-9.161,96.683,126.819)
C4': (-12.496,94.746,126.020)
C2': (-12.757,92.430,125.622)
O2': (-14.166,92.308,125.598)
N1: (-9.680,89.358,122.123)
N2: (-11.775,88.447,121.924)
N3: (-11.597,90.520,122.915)
N7: (-8.745,92.591,123.616)
N9: (-10.963,92.645,123.912)
O5': (-10.264,95.567,126.530)
O3': (-12.957,93.274,127.921)
OP2: (-7.821,96.057,126.681)
C3': (-12.259,93.400,126.684)
C1': (-12.276,93.120,124.342)
C5': (-11.668,95.901,126.541)
O6: (-7.531,90.094,122.247)
O4': (-12.180,94.509,124.623)
C8: (-9.753,93.280,124.077)
C2: (-11.027,89.475,122.337)
C6: (-8.727,90.305,122.483)
C5: (-9.322,91.434,123.109)
C4: (-10.690,91.455,123.275)
P: (-9.161,96.683,126.819)
C4': (-12.496,94.746,126.020)
C2': (-12.757,92.430,125.622)
O2': (-14.166,92.308,125.598)
N1: (-9.680,89.358,122.123)
N2: (-11.775,88.447,121.924)
N3: (-11.597,90.520,122.915)
N7: (-8.745,92.591,123.616)
N9: (-10.963,92.645,123.912)
O5': (-10.264,95.567,126.530)
O3': (-12.957,93.274,127.921)
OP1: (-13.290,92.433,130.232)
OP2: (-10.921,92.581,129.250)
C3': (-12.738,87.899,128.521)
C1': (-12.300,87.776,126.210)
C5': (-13.826,90.224,128.344)
O4': (-13.132,88.906,126.449)
C8: (-10.351,89.418,126.411)
O2': (-13.411,85.905,127.241)
C6: (-7.631,87.858,124.817)
C5: (-8.807,88.353,125.411)
C4: (-9.935,87.555,125.331)
P: (-12.374,92.307,129.069)
C4': (-13.693,88.828,127.786)
C2': (-12.401,86.875,127.444)
C2: (-8.860,85.994,124.210)
N1: (-7.694,86.652,124.209)
N3: (-10.030,86.351,124.739)
N6: (-6.464,88.508,124.828)
N7: (-9.085,89.530,126.093)
N9: (-10.927,88.241,125.991)
O5': (-12.530,90.842,128.458)
O3': (-13.308,87.314,129.690)
OP2: (-10.921,92.581,129.250)
C3': (-12.738,87.899,128.521)
C1': (-12.300,87.776,126.210)
C5': (-13.826,90.224,128.344)
O4': (-13.132,88.906,126.449)
C8: (-10.351,89.418,126.411)
O2': (-13.411,85.905,127.241)
C6: (-7.631,87.858,124.817)
C5: (-8.807,88.353,125.411)
C4: (-9.935,87.555,125.331)
P: (-12.374,92.307,129.069)
C4': (-13.693,88.828,127.786)
C2': (-12.401,86.875,127.444)
C2: (-8.860,85.994,124.210)
N1: (-7.694,86.652,124.209)
N3: (-10.030,86.351,124.739)
N6: (-6.464,88.508,124.828)
N7: (-9.085,89.530,126.093)
N9: (-10.927,88.241,125.991)
O5': (-12.530,90.842,128.458)
O3': (-13.308,87.314,129.690)
Image (generated by PyMOL):