Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5P:D8:D9
Extra
PDB:
ATOM 1 O3' U A 7 -2.899 33.276 129.202 1.00119.04 O
ATOM 2 P G A 8 -1.545 32.461 128.888 1.00114.38 P
ATOM 3 OP1 G A 8 -0.621 32.616 130.038 1.00122.26 O
ATOM 4 OP2 G A 8 -1.097 32.857 127.527 1.00117.57 O
ATOM 5 O5' G A 8 -2.010 30.937 128.823 1.00114.39 O
ATOM 6 C5' G A 8 -2.428 30.250 130.001 1.00103.98 C
ATOM 7 C4' G A 8 -3.150 28.971 129.639 1.00 93.74 C
ATOM 8 O4' G A 8 -4.244 29.292 128.735 1.00 86.55 O
ATOM 9 C3' G A 8 -2.355 27.935 128.861 1.00 98.06 C
ATOM 10 O3' G A 8 -1.548 27.125 129.705 1.00110.55 O
ATOM 11 C2' G A 8 -3.471 27.118 128.238 1.00 89.84 C
ATOM 12 O2' G A 8 -4.089 26.286 129.204 1.00 85.63 O
ATOM 13 C1' G A 8 -4.433 28.227 127.817 1.00 79.72 C
ATOM 14 N9 G A 8 -4.156 28.729 126.474 1.00 75.28 N
ATOM 15 C8 G A 8 -3.555 29.920 126.137 1.00 70.00 C
ATOM 16 N7 G A 8 -3.446 30.092 124.847 1.00 70.06 N
ATOM 17 C5 G A 8 -4.007 28.942 124.296 1.00 67.65 C
ATOM 18 C6 G A 8 -4.173 28.549 122.929 1.00 67.34 C
ATOM 19 O6 G A 8 -3.842 29.156 121.900 1.00 66.07 O
ATOM 20 N1 G A 8 -4.791 27.310 122.826 1.00 63.23 N
ATOM 21 C2 G A 8 -5.197 26.538 123.888 1.00 72.94 C
ATOM 22 N2 G A 8 -5.779 25.365 123.580 1.00 70.88 N
ATOM 23 N3 G A 8 -5.046 26.888 125.162 1.00 71.72 N
ATOM 24 C4 G A 8 -4.449 28.092 125.289 1.00 70.18 C
ATOM 25 P A A 9 -0.334 26.290 129.065 1.00105.14 P
ATOM 26 OP1 A A 9 0.462 25.674 130.155 1.00102.53 O
ATOM 27 OP2 A A 9 0.331 27.185 128.083 1.00102.06 O
ATOM 28 O5' A A 9 -1.057 25.116 128.273 1.00103.85 O
TER
ATOM 1 O3' G B 8 -1.548 27.125 129.705 1.00110.55 O
ATOM 2 P A B 9 -0.334 26.290 129.065 1.00105.14 P
ATOM 3 OP1 A B 9 0.462 25.674 130.155 1.00102.53 O
ATOM 4 OP2 A B 9 0.331 27.185 128.083 1.00102.06 O
ATOM 5 O5' A B 9 -1.057 25.116 128.273 1.00103.85 O
ATOM 6 C5' A B 9 -1.736 24.080 128.979 1.00104.17 C
ATOM 7 C4' A B 9 -2.205 23.012 128.020 1.00 94.59 C
ATOM 8 O4' A B 9 -3.165 23.585 127.093 1.00 96.25 O
ATOM 9 C3' A B 9 -1.127 22.426 127.127 1.00 90.36 C
ATOM 10 O3' A B 9 -0.443 21.376 127.794 1.00 87.13 O
ATOM 11 C2' A B 9 -1.944 21.915 125.951 1.00 88.01 C
ATOM 12 O2' A B 9 -2.621 20.718 126.271 1.00 97.24 O
ATOM 13 C1' A B 9 -2.964 23.042 125.799 1.00 80.25 C
ATOM 14 N9 A B 9 -2.513 24.127 124.932 1.00 72.54 N
ATOM 15 C8 A B 9 -1.987 25.341 125.309 1.00 70.54 C
ATOM 16 N7 A B 9 -1.699 26.128 124.299 1.00 72.06 N
ATOM 17 C5 A B 9 -2.051 25.380 123.183 1.00 68.85 C
ATOM 18 C6 A B 9 -1.992 25.652 121.803 1.00 69.36 C
ATOM 19 N6 A B 9 -1.538 26.799 121.291 1.00 74.38 N
ATOM 20 N1 A B 9 -2.419 24.691 120.955 1.00 70.15 N
ATOM 21 C2 A B 9 -2.872 23.539 121.469 1.00 71.49 C
ATOM 22 N3 A B 9 -2.979 23.166 122.747 1.00 66.91 N
ATOM 23 C4 A B 9 -2.547 24.142 123.559 1.00 70.00 C
ATOM 24 P C B 10 1.151 21.249 127.644 1.00 92.02 P
ATOM 25 OP1 C B 10 1.600 20.164 128.559 1.00 92.64 O
ATOM 26 OP2 C B 10 1.724 22.613 127.778 1.00 77.32 O
ATOM 27 O5' C B 10 1.362 20.784 126.134 1.00 95.75 O
TER
ATOM 2 P G A 8 -1.545 32.461 128.888 1.00114.38 P
ATOM 3 OP1 G A 8 -0.621 32.616 130.038 1.00122.26 O
ATOM 4 OP2 G A 8 -1.097 32.857 127.527 1.00117.57 O
ATOM 5 O5' G A 8 -2.010 30.937 128.823 1.00114.39 O
ATOM 6 C5' G A 8 -2.428 30.250 130.001 1.00103.98 C
ATOM 7 C4' G A 8 -3.150 28.971 129.639 1.00 93.74 C
ATOM 8 O4' G A 8 -4.244 29.292 128.735 1.00 86.55 O
ATOM 9 C3' G A 8 -2.355 27.935 128.861 1.00 98.06 C
ATOM 10 O3' G A 8 -1.548 27.125 129.705 1.00110.55 O
ATOM 11 C2' G A 8 -3.471 27.118 128.238 1.00 89.84 C
ATOM 12 O2' G A 8 -4.089 26.286 129.204 1.00 85.63 O
ATOM 13 C1' G A 8 -4.433 28.227 127.817 1.00 79.72 C
ATOM 14 N9 G A 8 -4.156 28.729 126.474 1.00 75.28 N
ATOM 15 C8 G A 8 -3.555 29.920 126.137 1.00 70.00 C
ATOM 16 N7 G A 8 -3.446 30.092 124.847 1.00 70.06 N
ATOM 17 C5 G A 8 -4.007 28.942 124.296 1.00 67.65 C
ATOM 18 C6 G A 8 -4.173 28.549 122.929 1.00 67.34 C
ATOM 19 O6 G A 8 -3.842 29.156 121.900 1.00 66.07 O
ATOM 20 N1 G A 8 -4.791 27.310 122.826 1.00 63.23 N
ATOM 21 C2 G A 8 -5.197 26.538 123.888 1.00 72.94 C
ATOM 22 N2 G A 8 -5.779 25.365 123.580 1.00 70.88 N
ATOM 23 N3 G A 8 -5.046 26.888 125.162 1.00 71.72 N
ATOM 24 C4 G A 8 -4.449 28.092 125.289 1.00 70.18 C
ATOM 25 P A A 9 -0.334 26.290 129.065 1.00105.14 P
ATOM 26 OP1 A A 9 0.462 25.674 130.155 1.00102.53 O
ATOM 27 OP2 A A 9 0.331 27.185 128.083 1.00102.06 O
ATOM 28 O5' A A 9 -1.057 25.116 128.273 1.00103.85 O
TER
ATOM 1 O3' G B 8 -1.548 27.125 129.705 1.00110.55 O
ATOM 2 P A B 9 -0.334 26.290 129.065 1.00105.14 P
ATOM 3 OP1 A B 9 0.462 25.674 130.155 1.00102.53 O
ATOM 4 OP2 A B 9 0.331 27.185 128.083 1.00102.06 O
ATOM 5 O5' A B 9 -1.057 25.116 128.273 1.00103.85 O
ATOM 6 C5' A B 9 -1.736 24.080 128.979 1.00104.17 C
ATOM 7 C4' A B 9 -2.205 23.012 128.020 1.00 94.59 C
ATOM 8 O4' A B 9 -3.165 23.585 127.093 1.00 96.25 O
ATOM 9 C3' A B 9 -1.127 22.426 127.127 1.00 90.36 C
ATOM 10 O3' A B 9 -0.443 21.376 127.794 1.00 87.13 O
ATOM 11 C2' A B 9 -1.944 21.915 125.951 1.00 88.01 C
ATOM 12 O2' A B 9 -2.621 20.718 126.271 1.00 97.24 O
ATOM 13 C1' A B 9 -2.964 23.042 125.799 1.00 80.25 C
ATOM 14 N9 A B 9 -2.513 24.127 124.932 1.00 72.54 N
ATOM 15 C8 A B 9 -1.987 25.341 125.309 1.00 70.54 C
ATOM 16 N7 A B 9 -1.699 26.128 124.299 1.00 72.06 N
ATOM 17 C5 A B 9 -2.051 25.380 123.183 1.00 68.85 C
ATOM 18 C6 A B 9 -1.992 25.652 121.803 1.00 69.36 C
ATOM 19 N6 A B 9 -1.538 26.799 121.291 1.00 74.38 N
ATOM 20 N1 A B 9 -2.419 24.691 120.955 1.00 70.15 N
ATOM 21 C2 A B 9 -2.872 23.539 121.469 1.00 71.49 C
ATOM 22 N3 A B 9 -2.979 23.166 122.747 1.00 66.91 N
ATOM 23 C4 A B 9 -2.547 24.142 123.559 1.00 70.00 C
ATOM 24 P C B 10 1.151 21.249 127.644 1.00 92.02 P
ATOM 25 OP1 C B 10 1.600 20.164 128.559 1.00 92.64 O
ATOM 26 OP2 C B 10 1.724 22.613 127.778 1.00 77.32 O
ATOM 27 O5' C B 10 1.362 20.784 126.134 1.00 95.75 O
TER
Atoms:
OP1: (-0.621,32.616,130.038)
OP2: (-1.097,32.857,127.527)
C3': (-2.355,27.935,128.861)
C1': (-4.433,28.227,127.817)
C5': (-2.428,30.250,130.001)
O6: (-3.842,29.156,121.900)
O4': (-4.244,29.292,128.735)
C8: (-3.555,29.920,126.137)
C2: (-5.197,26.538,123.888)
C6: (-4.173,28.549,122.929)
C5: (-4.007,28.942,124.296)
C4: (-4.449,28.092,125.289)
P: (-1.545,32.461,128.888)
C4': (-3.150,28.971,129.639)
C2': (-3.471,27.118,128.238)
O2': (-4.089,26.286,129.204)
N1: (-4.791,27.310,122.826)
N2: (-5.779,25.365,123.580)
N3: (-5.046,26.888,125.162)
N7: (-3.446,30.092,124.847)
N9: (-4.156,28.729,126.474)
O5': (-2.010,30.937,128.823)
O3': (-1.548,27.125,129.705)
OP2: (-1.097,32.857,127.527)
C3': (-2.355,27.935,128.861)
C1': (-4.433,28.227,127.817)
C5': (-2.428,30.250,130.001)
O6: (-3.842,29.156,121.900)
O4': (-4.244,29.292,128.735)
C8: (-3.555,29.920,126.137)
C2: (-5.197,26.538,123.888)
C6: (-4.173,28.549,122.929)
C5: (-4.007,28.942,124.296)
C4: (-4.449,28.092,125.289)
P: (-1.545,32.461,128.888)
C4': (-3.150,28.971,129.639)
C2': (-3.471,27.118,128.238)
O2': (-4.089,26.286,129.204)
N1: (-4.791,27.310,122.826)
N2: (-5.779,25.365,123.580)
N3: (-5.046,26.888,125.162)
N7: (-3.446,30.092,124.847)
N9: (-4.156,28.729,126.474)
O5': (-2.010,30.937,128.823)
O3': (-1.548,27.125,129.705)
OP1: (0.462,25.674,130.155)
OP2: (0.331,27.185,128.083)
C3': (-1.127,22.426,127.127)
C1': (-2.964,23.042,125.799)
C5': (-1.736,24.080,128.979)
O4': (-3.165,23.585,127.093)
C8: (-1.987,25.341,125.309)
O2': (-2.621,20.718,126.271)
C6: (-1.992,25.652,121.803)
C5: (-2.051,25.380,123.183)
C4: (-2.547,24.142,123.559)
P: (-0.334,26.290,129.065)
C4': (-2.205,23.012,128.020)
C2': (-1.944,21.915,125.951)
C2: (-2.872,23.539,121.469)
N1: (-2.419,24.691,120.955)
N3: (-2.979,23.166,122.747)
N6: (-1.538,26.799,121.291)
N7: (-1.699,26.128,124.299)
N9: (-2.513,24.127,124.932)
O5': (-1.057,25.116,128.273)
O3': (-0.443,21.376,127.794)
OP2: (0.331,27.185,128.083)
C3': (-1.127,22.426,127.127)
C1': (-2.964,23.042,125.799)
C5': (-1.736,24.080,128.979)
O4': (-3.165,23.585,127.093)
C8: (-1.987,25.341,125.309)
O2': (-2.621,20.718,126.271)
C6: (-1.992,25.652,121.803)
C5: (-2.051,25.380,123.183)
C4: (-2.547,24.142,123.559)
P: (-0.334,26.290,129.065)
C4': (-2.205,23.012,128.020)
C2': (-1.944,21.915,125.951)
C2: (-2.872,23.539,121.469)
N1: (-2.419,24.691,120.955)
N3: (-2.979,23.166,122.747)
N6: (-1.538,26.799,121.291)
N7: (-1.699,26.128,124.299)
N9: (-2.513,24.127,124.932)
O5': (-1.057,25.116,128.273)
O3': (-0.443,21.376,127.794)
Image (generated by PyMOL):