Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2403:A2404
Extra
PDB:
ATOM 1 O3' G A2402 -107.015 -46.229 83.488 1.00 0.01 O
ATOM 2 P G A2403 -107.613 -46.715 82.082 1.00 7.50 P
ATOM 3 OP1 G A2403 -108.891 -47.395 82.371 1.00 7.50 O
ATOM 4 OP2 G A2403 -106.546 -47.482 81.390 1.00 7.50 O
ATOM 5 O5' G A2403 -107.893 -45.339 81.324 1.00 7.50 O
ATOM 6 C5' G A2403 -107.032 -44.867 80.295 1.00 7.50 C
ATOM 7 C4' G A2403 -106.700 -43.411 80.485 1.00 7.50 C
ATOM 8 O4' G A2403 -105.507 -43.290 81.299 1.00 7.50 O
ATOM 9 C3' G A2403 -106.358 -42.631 79.235 1.00 7.50 C
ATOM 10 O3' G A2403 -107.487 -42.183 78.538 1.00 7.50 O
ATOM 11 C2' G A2403 -105.525 -41.507 79.792 1.00 7.50 C
ATOM 12 O2' G A2403 -106.341 -40.594 80.493 1.00 7.50 O
ATOM 13 C1' G A2403 -104.690 -42.264 80.799 1.00 7.50 C
ATOM 14 N9 G A2403 -103.527 -42.890 80.155 1.00 7.63 N
ATOM 15 C8 G A2403 -103.417 -44.238 79.953 1.00 7.63 C
ATOM 16 N7 G A2403 -102.320 -44.561 79.343 1.00 7.63 N
ATOM 17 C5 G A2403 -101.669 -43.358 79.114 1.00 7.63 C
ATOM 18 C6 G A2403 -100.425 -43.106 78.480 1.00 7.63 C
ATOM 19 O6 G A2403 -99.663 -43.928 77.989 1.00 7.63 O
ATOM 20 N1 G A2403 -100.093 -41.766 78.444 1.00 7.63 N
ATOM 21 C2 G A2403 -100.875 -40.786 78.967 1.00 7.63 C
ATOM 22 N2 G A2403 -100.358 -39.566 78.842 1.00 7.63 N
ATOM 23 N3 G A2403 -102.049 -40.986 79.558 1.00 7.63 N
ATOM 24 C4 G A2403 -102.396 -42.298 79.607 1.00 7.63 C
ATOM 25 P A A2404 -107.614 -42.477 76.974 1.00 1.97 P
ATOM 26 OP1 A A2404 -108.829 -41.761 76.488 1.00 1.97 O
ATOM 27 OP2 A A2404 -107.537 -43.957 76.819 1.00 1.97 O
ATOM 28 O5' A A2404 -106.317 -41.779 76.372 1.00 1.97 O
TER
ATOM 1 O3' G B2403 -107.487 -42.183 78.538 1.00 7.50 O
ATOM 2 P A B2404 -107.614 -42.477 76.974 1.00 1.97 P
ATOM 3 OP1 A B2404 -108.829 -41.761 76.488 1.00 1.97 O
ATOM 4 OP2 A B2404 -107.537 -43.957 76.819 1.00 1.97 O
ATOM 5 O5' A B2404 -106.317 -41.779 76.372 1.00 1.97 O
ATOM 6 C5' A B2404 -106.179 -40.367 76.441 1.00 1.97 C
ATOM 7 C4' A B2404 -104.880 -39.882 75.840 1.00 1.97 C
ATOM 8 O4' A B2404 -103.754 -40.393 76.603 1.00 1.97 O
ATOM 9 C3' A B2404 -104.608 -40.299 74.407 1.00 1.97 C
ATOM 10 O3' A B2404 -105.227 -39.434 73.472 1.00 1.97 O
ATOM 11 C2' A B2404 -103.096 -40.260 74.343 1.00 1.97 C
ATOM 12 O2' A B2404 -102.646 -38.932 74.179 1.00 1.97 O
ATOM 13 C1' A B2404 -102.708 -40.734 75.738 1.00 1.97 C
ATOM 14 N9 A B2404 -102.524 -42.194 75.782 1.00 2.23 N
ATOM 15 C8 A B2404 -103.422 -43.181 76.130 1.00 2.23 C
ATOM 16 N7 A B2404 -102.926 -44.396 76.054 1.00 2.23 N
ATOM 17 C5 A B2404 -101.616 -44.210 75.609 1.00 2.23 C
ATOM 18 C6 A B2404 -100.538 -45.085 75.310 1.00 2.23 C
ATOM 19 N6 A B2404 -100.566 -46.402 75.407 1.00 2.23 N
ATOM 20 N1 A B2404 -99.375 -44.555 74.898 1.00 2.23 N
ATOM 21 C2 A B2404 -99.294 -43.224 74.784 1.00 2.23 C
ATOM 22 N3 A B2404 -100.210 -42.288 75.035 1.00 2.23 N
ATOM 23 C4 A B2404 -101.364 -42.850 75.442 1.00 2.23 C
ATOM 24 P A B2405 -105.452 -39.868 71.930 1.00 0.24 P
ATOM 25 OP1 A B2405 -106.036 -38.693 71.237 1.00 0.24 O
ATOM 26 OP2 A B2405 -106.199 -41.147 71.930 1.00 0.24 O
ATOM 27 O5' A B2405 -103.972 -40.114 71.396 1.00 0.24 O
TER
ATOM 2 P G A2403 -107.613 -46.715 82.082 1.00 7.50 P
ATOM 3 OP1 G A2403 -108.891 -47.395 82.371 1.00 7.50 O
ATOM 4 OP2 G A2403 -106.546 -47.482 81.390 1.00 7.50 O
ATOM 5 O5' G A2403 -107.893 -45.339 81.324 1.00 7.50 O
ATOM 6 C5' G A2403 -107.032 -44.867 80.295 1.00 7.50 C
ATOM 7 C4' G A2403 -106.700 -43.411 80.485 1.00 7.50 C
ATOM 8 O4' G A2403 -105.507 -43.290 81.299 1.00 7.50 O
ATOM 9 C3' G A2403 -106.358 -42.631 79.235 1.00 7.50 C
ATOM 10 O3' G A2403 -107.487 -42.183 78.538 1.00 7.50 O
ATOM 11 C2' G A2403 -105.525 -41.507 79.792 1.00 7.50 C
ATOM 12 O2' G A2403 -106.341 -40.594 80.493 1.00 7.50 O
ATOM 13 C1' G A2403 -104.690 -42.264 80.799 1.00 7.50 C
ATOM 14 N9 G A2403 -103.527 -42.890 80.155 1.00 7.63 N
ATOM 15 C8 G A2403 -103.417 -44.238 79.953 1.00 7.63 C
ATOM 16 N7 G A2403 -102.320 -44.561 79.343 1.00 7.63 N
ATOM 17 C5 G A2403 -101.669 -43.358 79.114 1.00 7.63 C
ATOM 18 C6 G A2403 -100.425 -43.106 78.480 1.00 7.63 C
ATOM 19 O6 G A2403 -99.663 -43.928 77.989 1.00 7.63 O
ATOM 20 N1 G A2403 -100.093 -41.766 78.444 1.00 7.63 N
ATOM 21 C2 G A2403 -100.875 -40.786 78.967 1.00 7.63 C
ATOM 22 N2 G A2403 -100.358 -39.566 78.842 1.00 7.63 N
ATOM 23 N3 G A2403 -102.049 -40.986 79.558 1.00 7.63 N
ATOM 24 C4 G A2403 -102.396 -42.298 79.607 1.00 7.63 C
ATOM 25 P A A2404 -107.614 -42.477 76.974 1.00 1.97 P
ATOM 26 OP1 A A2404 -108.829 -41.761 76.488 1.00 1.97 O
ATOM 27 OP2 A A2404 -107.537 -43.957 76.819 1.00 1.97 O
ATOM 28 O5' A A2404 -106.317 -41.779 76.372 1.00 1.97 O
TER
ATOM 1 O3' G B2403 -107.487 -42.183 78.538 1.00 7.50 O
ATOM 2 P A B2404 -107.614 -42.477 76.974 1.00 1.97 P
ATOM 3 OP1 A B2404 -108.829 -41.761 76.488 1.00 1.97 O
ATOM 4 OP2 A B2404 -107.537 -43.957 76.819 1.00 1.97 O
ATOM 5 O5' A B2404 -106.317 -41.779 76.372 1.00 1.97 O
ATOM 6 C5' A B2404 -106.179 -40.367 76.441 1.00 1.97 C
ATOM 7 C4' A B2404 -104.880 -39.882 75.840 1.00 1.97 C
ATOM 8 O4' A B2404 -103.754 -40.393 76.603 1.00 1.97 O
ATOM 9 C3' A B2404 -104.608 -40.299 74.407 1.00 1.97 C
ATOM 10 O3' A B2404 -105.227 -39.434 73.472 1.00 1.97 O
ATOM 11 C2' A B2404 -103.096 -40.260 74.343 1.00 1.97 C
ATOM 12 O2' A B2404 -102.646 -38.932 74.179 1.00 1.97 O
ATOM 13 C1' A B2404 -102.708 -40.734 75.738 1.00 1.97 C
ATOM 14 N9 A B2404 -102.524 -42.194 75.782 1.00 2.23 N
ATOM 15 C8 A B2404 -103.422 -43.181 76.130 1.00 2.23 C
ATOM 16 N7 A B2404 -102.926 -44.396 76.054 1.00 2.23 N
ATOM 17 C5 A B2404 -101.616 -44.210 75.609 1.00 2.23 C
ATOM 18 C6 A B2404 -100.538 -45.085 75.310 1.00 2.23 C
ATOM 19 N6 A B2404 -100.566 -46.402 75.407 1.00 2.23 N
ATOM 20 N1 A B2404 -99.375 -44.555 74.898 1.00 2.23 N
ATOM 21 C2 A B2404 -99.294 -43.224 74.784 1.00 2.23 C
ATOM 22 N3 A B2404 -100.210 -42.288 75.035 1.00 2.23 N
ATOM 23 C4 A B2404 -101.364 -42.850 75.442 1.00 2.23 C
ATOM 24 P A B2405 -105.452 -39.868 71.930 1.00 0.24 P
ATOM 25 OP1 A B2405 -106.036 -38.693 71.237 1.00 0.24 O
ATOM 26 OP2 A B2405 -106.199 -41.147 71.930 1.00 0.24 O
ATOM 27 O5' A B2405 -103.972 -40.114 71.396 1.00 0.24 O
TER
Atoms:
OP1: (-108.891,-47.395,82.371)
OP2: (-106.546,-47.482,81.390)
C3': (-106.358,-42.631,79.235)
C1': (-104.690,-42.264,80.799)
C5': (-107.032,-44.867,80.295)
O6: (-99.663,-43.928,77.989)
O4': (-105.507,-43.290,81.299)
C8: (-103.417,-44.238,79.953)
C2: (-100.875,-40.786,78.967)
C6: (-100.425,-43.106,78.480)
C5: (-101.669,-43.358,79.114)
C4: (-102.396,-42.298,79.607)
P: (-107.613,-46.715,82.082)
C4': (-106.700,-43.411,80.485)
C2': (-105.525,-41.507,79.792)
O2': (-106.341,-40.594,80.493)
N1: (-100.093,-41.766,78.444)
N2: (-100.358,-39.566,78.842)
N3: (-102.049,-40.986,79.558)
N7: (-102.320,-44.561,79.343)
N9: (-103.527,-42.890,80.155)
O5': (-107.893,-45.339,81.324)
O3': (-107.487,-42.183,78.538)
OP2: (-106.546,-47.482,81.390)
C3': (-106.358,-42.631,79.235)
C1': (-104.690,-42.264,80.799)
C5': (-107.032,-44.867,80.295)
O6: (-99.663,-43.928,77.989)
O4': (-105.507,-43.290,81.299)
C8: (-103.417,-44.238,79.953)
C2: (-100.875,-40.786,78.967)
C6: (-100.425,-43.106,78.480)
C5: (-101.669,-43.358,79.114)
C4: (-102.396,-42.298,79.607)
P: (-107.613,-46.715,82.082)
C4': (-106.700,-43.411,80.485)
C2': (-105.525,-41.507,79.792)
O2': (-106.341,-40.594,80.493)
N1: (-100.093,-41.766,78.444)
N2: (-100.358,-39.566,78.842)
N3: (-102.049,-40.986,79.558)
N7: (-102.320,-44.561,79.343)
N9: (-103.527,-42.890,80.155)
O5': (-107.893,-45.339,81.324)
O3': (-107.487,-42.183,78.538)
OP1: (-108.829,-41.761,76.488)
OP2: (-107.537,-43.957,76.819)
C3': (-104.608,-40.299,74.407)
C1': (-102.708,-40.734,75.738)
C5': (-106.179,-40.367,76.441)
O4': (-103.754,-40.393,76.603)
C8: (-103.422,-43.181,76.130)
O2': (-102.646,-38.932,74.179)
C6: (-100.538,-45.085,75.310)
C5: (-101.616,-44.210,75.609)
C4: (-101.364,-42.850,75.442)
P: (-107.614,-42.477,76.974)
C4': (-104.880,-39.882,75.840)
C2': (-103.096,-40.260,74.343)
C2: (-99.294,-43.224,74.784)
N1: (-99.375,-44.555,74.898)
N3: (-100.210,-42.288,75.035)
N6: (-100.566,-46.402,75.407)
N7: (-102.926,-44.396,76.054)
N9: (-102.524,-42.194,75.782)
O5': (-106.317,-41.779,76.372)
O3': (-105.227,-39.434,73.472)
OP2: (-107.537,-43.957,76.819)
C3': (-104.608,-40.299,74.407)
C1': (-102.708,-40.734,75.738)
C5': (-106.179,-40.367,76.441)
O4': (-103.754,-40.393,76.603)
C8: (-103.422,-43.181,76.130)
O2': (-102.646,-38.932,74.179)
C6: (-100.538,-45.085,75.310)
C5: (-101.616,-44.210,75.609)
C4: (-101.364,-42.850,75.442)
P: (-107.614,-42.477,76.974)
C4': (-104.880,-39.882,75.840)
C2': (-103.096,-40.260,74.343)
C2: (-99.294,-43.224,74.784)
N1: (-99.375,-44.555,74.898)
N3: (-100.210,-42.288,75.035)
N6: (-100.566,-46.402,75.407)
N7: (-102.926,-44.396,76.054)
N9: (-102.524,-42.194,75.782)
O5': (-106.317,-41.779,76.372)
O3': (-105.227,-39.434,73.472)
Image (generated by PyMOL):